RNA–Protein interactions for RNA: ENST00000556827.1

HIF1A-209, Transcript of hypoxia inducible factor 1 subunit alpha, humanhuman

TSL 2

Gene HIF1A, Length 752 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF1A-209ENST00000556827 APLP1P51693 650 aa12.1□□□□□ -0.47
HIF1A-209ENST00000556827 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.09□□□□□ -0.47
HIF1A-209ENST00000556827 PXYLP1Q8TE99 480 aa12.09□□□□□ -0.47
HIF1A-209ENST00000556827 METTL3Q86U44 580 aaKnown RBP12.07□□□□□ -0.48
HIF1A-209ENST00000556827 MTRQ99707 1265 aa12.07□□□□□ -0.48
HIF1A-209ENST00000556827 PRR14Q9BWN1 585 aa12.06□□□□□ -0.48
HIF1A-209ENST00000556827 TJAP1Q5JTD0 557 aa12.05□□□□□ -0.48
HIF1A-209ENST00000556827 IL21Q9HBE4 155 aa12.05□□□□□ -0.48
HIF1A-209ENST00000556827 COPS2P61201 443 aa12.02□□□□□ -0.49
HIF1A-209ENST00000556827 KMT5BQ4FZB7 885 aa12.01□□□□□ -0.49
HIF1A-209ENST00000556827 RGS20O76081 388 aa12□□□□□ -0.49
HIF1A-209ENST00000556827 CFHP08603 1231 aa12□□□□□ -0.49
HIF1A-209ENST00000556827 PCDHB3Q9Y5E6 796 aa12□□□□□ -0.49
HIF1A-209ENST00000556827 RSPH4AQ5TD94 716 aa11.98□□□□□ -0.49
HIF1A-209ENST00000556827 NLRP7Q8WX94 980 aa11.98□□□□□ -0.49
HIF1A-209ENST00000556827 ZNF516Q92618 1163 aa11.98□□□□□ -0.49
HIF1A-209ENST00000556827 BCANQ96GW7 911 aa11.97□□□□□ -0.49
HIF1A-209ENST00000556827 SLC10A3P09131 477 aa11.96□□□□□ -0.49
HIF1A-209ENST00000556827 MAP2K5Q13163 448 aa11.95□□□□□ -0.5
HIF1A-209ENST00000556827 BLOC1S3Q6QNY0 202 aa11.94□□□□□ -0.5
HIF1A-209ENST00000556827 RDH13Q8NBN7 331 aa11.94□□□□□ -0.5
HIF1A-209ENST00000556827 DAXXQ9UER7 740 aaPredicted RBP11.94□□□□□ -0.5
HIF1A-209ENST00000556827 ACTN4O43707 911 aaKnown RBP11.93□□□□□ -0.5
HIF1A-209ENST00000556827 LMOD2Q6P5Q4 547 aa11.93□□□□□ -0.5
HIF1A-209ENST00000556827 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.93□□□□□ -0.5
HIF1A-209ENST00000556827 PHOX2BQ99453 314 aa11.93□□□□□ -0.5
HIF1A-209ENST00000556827 DDX11L8A8MPP1 907 aa11.92□□□□□ -0.5
HIF1A-209ENST00000556827 ZPR1O75312 459 aa11.92□□□□□ -0.5
HIF1A-209ENST00000556827 NKX2-3Q8TAU0 364 aa11.91□□□□□ -0.5
HIF1A-209ENST00000556827 SULF1Q8IWU6 871 aa11.9□□□□□ -0.5
HIF1A-209ENST00000556827 IRF6O14896 467 aa11.89□□□□□ -0.51
HIF1A-209ENST00000556827 MINK1Q8N4C8 1332 aaPredicted RBP11.88□□□□□ -0.51
HIF1A-209ENST00000556827 PPP1R18Q6NYC8 613 aa11.88□□□□□ -0.51
HIF1A-209ENST00000556827 GGCXP38435 758 aa11.87□□□□□ -0.51
HIF1A-209ENST00000556827 TLL1O43897 1013 aa11.86□□□□□ -0.51
HIF1A-209ENST00000556827 NR1I2O75469 434 aa11.86□□□□□ -0.51
HIF1A-209ENST00000556827 CCDC102AQ96A19 550 aa11.86□□□□□ -0.51
HIF1A-209ENST00000556827 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.86□□□□□ -0.51
HIF1A-209ENST00000556827 MDM2Q00987 491 aaPredicted RBP11.83□□□□□ -0.52
HIF1A-209ENST00000556827 PUS10Q3MIT2 529 aaKnown RBP11.83□□□□□ -0.52
HIF1A-209ENST00000556827 IRX2Q9BZI1 471 aaPredicted RBP11.83□□□□□ -0.52
HIF1A-209ENST00000556827 KRI1Q8N9T8 703 aaKnown RBP11.82□□□□□ -0.52
HIF1A-209ENST00000556827 FUT2Q10981 343 aa11.81□□□□□ -0.52
HIF1A-209ENST00000556827 GCGRP47871 477 aa11.8□□□□□ -0.52
HIF1A-209ENST00000556827 PRKD2Q9BZL6 878 aa11.8□□□□□ -0.52
HIF1A-209ENST00000556827 ADH1BP00325 375 aa11.78□□□□□ -0.52
HIF1A-209ENST00000556827 SCUBE3Q8IX30 993 aa11.78□□□□□ -0.52
HIF1A-209ENST00000556827 TMUB1Q9BVT8 246 aa11.78□□□□□ -0.52
HIF1A-209ENST00000556827 ATP6V1AP38606 617 aa11.77□□□□□ -0.53
HIF1A-209ENST00000556827 ZC3H15Q8WU90 426 aaKnown RBP11.77□□□□□ -0.53
HIF1A-209ENST00000556827 S1PR4O95977 384 aa11.76□□□□□ -0.53
HIF1A-209ENST00000556827 CLCN1P35523 988 aa11.76□□□□□ -0.53
HIF1A-209ENST00000556827 MORN1Q5T089 497 aa11.76□□□□□ -0.53
HIF1A-209ENST00000556827 BARGINQ6ZT62 677 aa11.75□□□□□ -0.53
HIF1A-209ENST00000556827 RNF223E7ERA6 249 aa11.74□□□□□ -0.53
HIF1A-209ENST00000556827 ZMYND10O75800 440 aa11.74□□□□□ -0.53
HIF1A-209ENST00000556827 CD46P15529 392 aa11.74□□□□□ -0.53
HIF1A-209ENST00000556827 GRIPAP1Q4V328 841 aa11.74□□□□□ -0.53
HIF1A-209ENST00000556827 SPSB2Q99619 263 aa11.74□□□□□ -0.53
HIF1A-209ENST00000556827 GPCPD1Q9NPB8 672 aa11.74□□□□□ -0.53
HIF1A-209ENST00000556827 V9GY48 417 aaPredicted RBP11.74□□□□□ -0.53
HIF1A-209ENST00000556827 SLC6A16Q9GZN6 736 aa11.73□□□□□ -0.53
HIF1A-209ENST00000556827 SLC27A5Q9Y2P5 690 aa11.72□□□□□ -0.53
HIF1A-209ENST00000556827 PPEF1O14829 653 aaPredicted RBP11.69□□□□□ -0.54
HIF1A-209ENST00000556827 KDM4AO75164 1064 aa11.69□□□□□ -0.54
HIF1A-209ENST00000556827 FMNL1O95466 1100 aaPredicted RBP11.69□□□□□ -0.54
HIF1A-209ENST00000556827 TTLL12Q14166 644 aaPredicted RBP11.69□□□□□ -0.54
HIF1A-209ENST00000556827 ANKLE1Q8NAG6 615 aa11.69□□□□□ -0.54
HIF1A-209ENST00000556827 FAM217BQ9NTX9 383 aaPredicted RBP11.69□□□□□ -0.54
HIF1A-209ENST00000556827 USP46P62068 366 aa11.66□□□□□ -0.54
HIF1A-209ENST00000556827 THAP11Q96EK4 314 aa11.66□□□□□ -0.54
HIF1A-209ENST00000556827 SLC19A1P41440 591 aa11.65□□□□□ -0.54
HIF1A-209ENST00000556827 Q3C1V9 767 aa11.65□□□□□ -0.54
HIF1A-209ENST00000556827 LAPTM4AQ15012 233 aa11.64□□□□□ -0.55
HIF1A-209ENST00000556827 SALL2Q9Y467 1007 aaPredicted RBP11.64□□□□□ -0.55
HIF1A-209ENST00000556827 GFRA3O60609 400 aa11.63□□□□□ -0.55
HIF1A-209ENST00000556827 PRKCSHP14314 528 aaPredicted RBP11.63□□□□□ -0.55
HIF1A-209ENST00000556827 AMHR2Q16671 573 aa11.63□□□□□ -0.55
HIF1A-209ENST00000556827 BRICD5Q6PL45 260 aa11.63□□□□□ -0.55
HIF1A-209ENST00000556827 RNF19BQ6ZMZ0 732 aa11.63□□□□□ -0.55
HIF1A-209ENST00000556827 Q6ZNB5 142 aa11.63□□□□□ -0.55
HIF1A-209ENST00000556827 NUTM1Q86Y26 1132 aa11.63□□□□□ -0.55
HIF1A-209ENST00000556827 REPIN1Q9BWE0 567 aaKnown RBP11.63□□□□□ -0.55
HIF1A-209ENST00000556827 HOXA2O43364 376 aa11.61□□□□□ -0.55
HIF1A-209ENST00000556827 SSTR3P32745 418 aaPredicted RBP11.61□□□□□ -0.55
HIF1A-209ENST00000556827 TPRNQ4KMQ1 711 aa11.61□□□□□ -0.55
HIF1A-209ENST00000556827 PRDM9Q9NQV7 894 aa11.61□□□□□ -0.55
HIF1A-209ENST00000556827 GIGYF2Q6Y7W6 1299 aaKnown RBP11.6□□□□□ -0.55
HIF1A-209ENST00000556827 FAM160A2Q8N612 972 aaPredicted RBP11.6□□□□□ -0.55
HIF1A-209ENST00000556827 HLA-CQ95604 372 aa11.6□□□□□ -0.55
HIF1A-209ENST00000556827 EMID1Q96A84 441 aaPredicted RBP11.6□□□□□ -0.55
HIF1A-209ENST00000556827 AK7Q96M32 723 aa11.59□□□□□ -0.55
HIF1A-209ENST00000556827 PDZRN3Q9UPQ7 1066 aa11.59□□□□□ -0.55
HIF1A-209ENST00000556827 FCF1Q9Y324 198 aaKnown RBP11.59□□□□□ -0.55
HIF1A-209ENST00000556827 MSS51Q4VC12 460 aa11.58□□□□□ -0.56
HIF1A-209ENST00000556827 PLA2G2CQ5R387 149 aa11.58□□□□□ -0.56
HIF1A-209ENST00000556827 LIAT1Q6ZQX7 453 aa11.58□□□□□ -0.56
HIF1A-209ENST00000556827 NRG2O14511 850 aaPredicted RBP11.57□□□□□ -0.56
HIF1A-209ENST00000556827 GUCA2AQ02747 115 aa11.57□□□□□ -0.56
HIF1A-209ENST00000556827 SPRYD7Q5W111 196 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms