RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 GPCPD1Q9NPB8 672 aa10.55□□□□□ -0.72
SCFD1-221ENST00000556534 MYT1LQ9UL68 1186 aa10.55□□□□□ -0.72
SCFD1-221ENST00000556534 GOLGA8CPA6NN73 597 aa10.54□□□□□ -0.72
SCFD1-221ENST00000556534 TTLL12Q14166 644 aaPredicted RBP10.54□□□□□ -0.72
SCFD1-221ENST00000556534 WNT2BQ93097 391 aa10.54□□□□□ -0.72
SCFD1-221ENST00000556534 GIGYF2Q6Y7W6 1299 aaKnown RBP10.53□□□□□ -0.72
SCFD1-221ENST00000556534 LRCH3Q96II8 777 aa10.53□□□□□ -0.72
SCFD1-221ENST00000556534 DAXXQ9UER7 740 aaPredicted RBP10.53□□□□□ -0.72
SCFD1-221ENST00000556534 SOWAHBA6NEL2 793 aa10.52□□□□□ -0.73
SCFD1-221ENST00000556534 BCAMP50895 628 aa10.52□□□□□ -0.73
SCFD1-221ENST00000556534 BRPF1P55201 1214 aaPredicted RBP10.52□□□□□ -0.73
SCFD1-221ENST00000556534 KCTD12Q96CX2 325 aaKnown RBP10.52□□□□□ -0.73
SCFD1-221ENST00000556534 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.52□□□□□ -0.73
SCFD1-221ENST00000556534 THSD4Q6ZMP0 1018 aa10.51□□□□□ -0.73
SCFD1-221ENST00000556534 GPBP1L1Q9HC44 474 aaPredicted RBP10.51□□□□□ -0.73
SCFD1-221ENST00000556534 FAM217BQ9NTX9 383 aaPredicted RBP10.5□□□□□ -0.73
SCFD1-221ENST00000556534 SLF2Q8IX21 1173 aa10.49□□□□□ -0.73
SCFD1-221ENST00000556534 HDGFP51858 240 aaKnown RBP10.48□□□□□ -0.73
SCFD1-221ENST00000556534 NEUROD2Q15784 382 aa10.48□□□□□ -0.73
SCFD1-221ENST00000556534 RNF166Q96A37 237 aaPredicted RBP10.48□□□□□ -0.73
SCFD1-221ENST00000556534 DDX11L8A8MPP1 907 aa10.47□□□□□ -0.73
SCFD1-221ENST00000556534 RNF40O75150 1001 aa10.47□□□□□ -0.73
SCFD1-221ENST00000556534 SLC10A3P09131 477 aa10.47□□□□□ -0.73
SCFD1-221ENST00000556534 KDM4CQ9H3R0 1056 aa10.47□□□□□ -0.73
SCFD1-221ENST00000556534 HPS5Q9UPZ3 1129 aa10.47□□□□□ -0.73
SCFD1-221ENST00000556534 MS4A1P11836 297 aa10.46□□□□□ -0.73
SCFD1-221ENST00000556534 CD46P15529 392 aa10.46□□□□□ -0.73
SCFD1-221ENST00000556534 MMRN1Q13201 1228 aa10.46□□□□□ -0.73
SCFD1-221ENST00000556534 SULF1Q8IWU6 871 aa10.46□□□□□ -0.73
SCFD1-221ENST00000556534 SLC4A3P48751 1232 aa10.45□□□□□ -0.74
SCFD1-221ENST00000556534 TSR3Q9UJK0 312 aaKnown RBP10.45□□□□□ -0.74
SCFD1-221ENST00000556534 SSTR3P32745 418 aaPredicted RBP10.44□□□□□ -0.74
SCFD1-221ENST00000556534 RDH13Q8NBN7 331 aa10.43□□□□□ -0.74
SCFD1-221ENST00000556534 WBP1LQ9NX94 342 aa10.42□□□□□ -0.74
SCFD1-221ENST00000556534 CFHP08603 1231 aa10.41□□□□□ -0.74
SCFD1-221ENST00000556534 NECTIN2Q92692 538 aa10.41□□□□□ -0.74
SCFD1-221ENST00000556534 PPP4CP60510 307 aa10.4□□□□□ -0.74
SCFD1-221ENST00000556534 PTPN5P54829 565 aa10.39□□□□□ -0.75
SCFD1-221ENST00000556534 GCGRP47871 477 aa10.38□□□□□ -0.75
SCFD1-221ENST00000556534 APLP1P51693 650 aa10.38□□□□□ -0.75
SCFD1-221ENST00000556534 RSPH4AQ5TD94 716 aa10.38□□□□□ -0.75
SCFD1-221ENST00000556534 BEGAINQ9BUH8 593 aa10.38□□□□□ -0.75
SCFD1-221ENST00000556534 FAM117AQ9C073 453 aa10.38□□□□□ -0.75
SCFD1-221ENST00000556534 NYAP1Q6ZVC0 841 aa10.36□□□□□ -0.75
SCFD1-221ENST00000556534 PLEKHG3A1L390 1219 aa10.35□□□□□ -0.75
SCFD1-221ENST00000556534 KMT5BQ4FZB7 885 aa10.35□□□□□ -0.75
SCFD1-221ENST00000556534 HCSTQ9UBK5 93 aa10.35□□□□□ -0.75
SCFD1-221ENST00000556534 ACTN4O43707 911 aaKnown RBP10.34□□□□□ -0.75
SCFD1-221ENST00000556534 DDRGK1Q96HY6 314 aa10.34□□□□□ -0.75
SCFD1-221ENST00000556534 PRR14Q9BWN1 585 aa10.34□□□□□ -0.75
SCFD1-221ENST00000556534 KDM4AO75164 1064 aa10.32□□□□□ -0.76
SCFD1-221ENST00000556534 FUT2Q10981 343 aa10.32□□□□□ -0.76
SCFD1-221ENST00000556534 SPIRE2Q8WWL2 714 aa10.32□□□□□ -0.76
SCFD1-221ENST00000556534 HOXA2O43364 376 aa10.3□□□□□ -0.76
SCFD1-221ENST00000556534 USP46P62068 366 aa10.3□□□□□ -0.76
SCFD1-221ENST00000556534 NUTM1Q86Y26 1132 aa10.3□□□□□ -0.76
SCFD1-221ENST00000556534 TBC1D2Q9BYX2 928 aa10.3□□□□□ -0.76
SCFD1-221ENST00000556534 PCDHB3Q9Y5E6 796 aa10.28□□□□□ -0.76
SCFD1-221ENST00000556534 PUS10Q3MIT2 529 aaKnown RBP10.27□□□□□ -0.77
SCFD1-221ENST00000556534 MYSM1Q5VVJ2 828 aa10.27□□□□□ -0.77
SCFD1-221ENST00000556534 BLOC1S3Q6QNY0 202 aa10.27□□□□□ -0.77
SCFD1-221ENST00000556534 IL27Q8NEV9 243 aa10.27□□□□□ -0.77
SCFD1-221ENST00000556534 HLA-CQ95604 372 aa10.27□□□□□ -0.77
SCFD1-221ENST00000556534 MOXD2PA6NHM9 499 aa10.26□□□□□ -0.77
SCFD1-221ENST00000556534 ATP6V1AP38606 617 aa10.26□□□□□ -0.77
SCFD1-221ENST00000556534 DIXDC1Q155Q3 683 aa10.26□□□□□ -0.77
SCFD1-221ENST00000556534 MORN1Q5T089 497 aa10.26□□□□□ -0.77
SCFD1-221ENST00000556534 SH3D19Q5HYK7 790 aa10.25□□□□□ -0.77
SCFD1-221ENST00000556534 MTRQ99707 1265 aa10.25□□□□□ -0.77
SCFD1-221ENST00000556534 GUCA2AQ02747 115 aa10.24□□□□□ -0.77
SCFD1-221ENST00000556534 TJAP1Q5JTD0 557 aa10.24□□□□□ -0.77
SCFD1-221ENST00000556534 RSBN1LQ6PCB5 846 aaPredicted RBP10.24□□□□□ -0.77
SCFD1-221ENST00000556534 NDUFV2P19404 249 aa10.23□□□□□ -0.77
SCFD1-221ENST00000556534 COPS2P61201 443 aa10.23□□□□□ -0.77
SCFD1-221ENST00000556534 RSPH6AQ9H0K4 717 aa10.23□□□□□ -0.77
SCFD1-221ENST00000556534 SPTLC1O15269 473 aa10.22□□□□□ -0.77
SCFD1-221ENST00000556534 ITGBL1O95965 494 aaPredicted RBP10.22□□□□□ -0.77
SCFD1-221ENST00000556534 GRIPAP1Q4V328 841 aa10.22□□□□□ -0.77
SCFD1-221ENST00000556534 LIMD1Q9UGP4 676 aa10.22□□□□□ -0.77
SCFD1-221ENST00000556534 SLC27A5Q9Y2P5 690 aa10.22□□□□□ -0.77
SCFD1-221ENST00000556534 GJA5P36382 358 aa10.21□□□□□ -0.77
SCFD1-221ENST00000556534 CLK2P49760 499 aaKnown RBP10.21□□□□□ -0.77
SCFD1-221ENST00000556534 PCDHGC3Q9UN70 934 aa10.21□□□□□ -0.77
SCFD1-221ENST00000556534 NR1I2O75469 434 aa10.2□□□□□ -0.78
SCFD1-221ENST00000556534 FDX1P10109 184 aa10.2□□□□□ -0.78
SCFD1-221ENST00000556534 SKIV2LQ15477 1246 aaKnown RBP10.2□□□□□ -0.78
SCFD1-221ENST00000556534 RIC3Q7Z5B4 369 aa10.2□□□□□ -0.78
SCFD1-221ENST00000556534 IL21Q9HBE4 155 aa10.2□□□□□ -0.78
SCFD1-221ENST00000556534 GOPCQ9HD26 462 aa10.2□□□□□ -0.78
SCFD1-221ENST00000556534 ZNF516Q92618 1163 aa10.19□□□□□ -0.78
SCFD1-221ENST00000556534 TLL1O43897 1013 aa10.18□□□□□ -0.78
SCFD1-221ENST00000556534 ZPR1O75312 459 aa10.18□□□□□ -0.78
SCFD1-221ENST00000556534 TUSC1Q2TAM9 212 aa10.18□□□□□ -0.78
SCFD1-221ENST00000556534 SCUBE3Q8IX30 993 aa10.18□□□□□ -0.78
SCFD1-221ENST00000556534 POLR3EQ9NVU0 708 aa10.18□□□□□ -0.78
SCFD1-221ENST00000556534 RNF19BQ6ZMZ0 732 aa10.17□□□□□ -0.78
SCFD1-221ENST00000556534 THAP11Q96EK4 314 aa10.17□□□□□ -0.78
SCFD1-221ENST00000556534 TMEM132AQ24JP5 1023 aa10.16□□□□□ -0.78
SCFD1-221ENST00000556534 PCDHB15Q9Y5E8 787 aa10.16□□□□□ -0.78
SCFD1-221ENST00000556534 Q3C1V9 767 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms