RNA–Protein interactions for RNA: ENST00000556343.1

ACTN1-218, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 274 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-218ENST00000556343 RIMS2Q9UQ26 1411 aa13.02□□□□□ -0.33
ACTN1-218ENST00000556343 TXNDC2Q86VQ3 553 aa13.01□□□□□ -0.33
ACTN1-218ENST00000556343 CARD11Q9BXL7 1154 aa13.01□□□□□ -0.33
ACTN1-218ENST00000556343 ADGRF5Q8IZF2 1346 aa13.01□□□□□ -0.33
ACTN1-218ENST00000556343 TMEM2Q9UHN6 1383 aa13.01□□□□□ -0.33
ACTN1-218ENST00000556343 PRAG1Q86YV5 1406 aa13.01□□□□□ -0.33
ACTN1-218ENST00000556343 MYOM2P54296 1465 aa13.01□□□□□ -0.33
ACTN1-218ENST00000556343 TMEM131LA2VDJ0 1609 aa13□□□□□ -0.33
ACTN1-218ENST00000556343 ROCK2O75116 1388 aaKnown RBP13□□□□□ -0.33
ACTN1-218ENST00000556343 EIF4G2P78344 907 aaKnown RBP eCLIP13□□□□□ -0.33
ACTN1-218ENST00000556343 NUTM2DQ5VT03 806 aaPredicted RBP13□□□□□ -0.33
ACTN1-218ENST00000556343 ANKLE2Q86XL3 938 aa13□□□□□ -0.33
ACTN1-218ENST00000556343 C14orf93Q9H972 538 aaKnown RBP12.99□□□□□ -0.33
ACTN1-218ENST00000556343 KDM5AP29375 1690 aaKnown RBP12.98□□□□□ -0.33
ACTN1-218ENST00000556343 SLC24A1O60721 1099 aa12.97□□□□□ -0.33
ACTN1-218ENST00000556343 CFAP70Q5T0N1 1121 aa12.97□□□□□ -0.33
ACTN1-218ENST00000556343 RALGAPBQ86X10 1494 aa12.96□□□□□ -0.34
ACTN1-218ENST00000556343 CEP170BQ9Y4F5 1589 aaPredicted RBP12.95□□□□□ -0.34
ACTN1-218ENST00000556343 NEXMIFQ5QGS0 1516 aa12.95□□□□□ -0.34
ACTN1-218ENST00000556343 ZNF316A6NFI3 1004 aaPredicted RBP12.95□□□□□ -0.34
ACTN1-218ENST00000556343 NRXN1Q9ULB1 1477 aa12.95□□□□□ -0.34
ACTN1-218ENST00000556343 NBPF1Q3BBV0 1214 aa12.94□□□□□ -0.34
ACTN1-218ENST00000556343 MYO3AQ8NEV4 1616 aa12.94□□□□□ -0.34
ACTN1-218ENST00000556343 PIK3C2GO75747 1445 aa12.94□□□□□ -0.34
ACTN1-218ENST00000556343 GPRASP1Q5JY77 1395 aa12.94□□□□□ -0.34
ACTN1-218ENST00000556343 PLEKHG1Q9ULL1 1385 aa12.94□□□□□ -0.34
ACTN1-218ENST00000556343 SLIT1O75093 1534 aa12.93□□□□□ -0.34
ACTN1-218ENST00000556343 LTKP29376 864 aa12.93□□□□□ -0.34
ACTN1-218ENST00000556343 UBR1Q8IWV7 1749 aa12.93□□□□□ -0.34
ACTN1-218ENST00000556343 EIF3AQ14152 1382 aaKnown RBP12.93□□□□□ -0.34
ACTN1-218ENST00000556343 ARHGAP23Q9P227 1491 aa12.92□□□□□ -0.34
ACTN1-218ENST00000556343 PPLO60437 1756 aa12.92□□□□□ -0.34
ACTN1-218ENST00000556343 HSPA5P11021 654 aaKnown RBP12.92□□□□□ -0.34
ACTN1-218ENST00000556343 SCAF11Q99590 1463 aaKnown RBP12.91□□□□□ -0.34
ACTN1-218ENST00000556343 TBX22Q9Y458 520 aa12.91□□□□□ -0.34
ACTN1-218ENST00000556343 USP47Q96K76 1375 aa12.9□□□□□ -0.34
ACTN1-218ENST00000556343 IFT172Q9UG01 1749 aa12.89□□□□□ -0.35
ACTN1-218ENST00000556343 TMEM132EQ6IEE7 984 aa12.89□□□□□ -0.35
ACTN1-218ENST00000556343 ZNF142P52746 1687 aaPredicted RBP12.89□□□□□ -0.35
ACTN1-218ENST00000556343 KIAA1210Q9ULL0 1709 aa12.88□□□□□ -0.35
ACTN1-218ENST00000556343 MYO5BQ9ULV0 1848 aa12.88□□□□□ -0.35
ACTN1-218ENST00000556343 SENP3Q9H4L4 574 aaPredicted RBP12.88□□□□□ -0.35
ACTN1-218ENST00000556343 ST20-MTHFSA0A0A6YYL1 179 aa12.87□□□□□ -0.35
ACTN1-218ENST00000556343 STK26Q9P289 416 aa12.87□□□□□ -0.35
ACTN1-218ENST00000556343 TRAK1Q9UPV9 953 aa12.87□□□□□ -0.35
ACTN1-218ENST00000556343 TRPM1Q7Z4N2 1603 aa12.87□□□□□ -0.35
ACTN1-218ENST00000556343 SETBP1Q9Y6X0 1596 aa12.86□□□□□ -0.35
ACTN1-218ENST00000556343 CDCA8Q53HL2 280 aa12.86□□□□□ -0.35
ACTN1-218ENST00000556343 SIRT1Q96EB6 747 aa12.86□□□□□ -0.35
ACTN1-218ENST00000556343 SLC26A8Q96RN1 970 aa12.86□□□□□ -0.35
ACTN1-218ENST00000556343 POGKQ9P215 609 aa12.86□□□□□ -0.35
ACTN1-218ENST00000556343 LAMC1P11047 1609 aa12.86□□□□□ -0.35
ACTN1-218ENST00000556343 NCKAP5LQ9HCH0 1330 aa12.86□□□□□ -0.35
ACTN1-218ENST00000556343 TMF1P82094 1093 aa12.85□□□□□ -0.35
ACTN1-218ENST00000556343 HIRIP3Q9BW71 556 aaPredicted RBP12.85□□□□□ -0.35
ACTN1-218ENST00000556343 DMRT2Q9Y5R5 561 aa12.85□□□□□ -0.35
ACTN1-218ENST00000556343 NPHP4O75161 1426 aaPredicted RBP12.85□□□□□ -0.35
ACTN1-218ENST00000556343 ALKQ9UM73 1620 aa12.84□□□□□ -0.35
ACTN1-218ENST00000556343 LRPPRCP42704 1394 aaKnown RBP12.84□□□□□ -0.35
ACTN1-218ENST00000556343 PIK3R4Q99570 1358 aa12.84□□□□□ -0.35
ACTN1-218ENST00000556343 HSPA2P54652 639 aa12.84□□□□□ -0.35
ACTN1-218ENST00000556343 AEBP2Q6ZN18 517 aaPredicted RBP12.84□□□□□ -0.35
ACTN1-218ENST00000556343 CENPJQ9HC77 1338 aaPredicted RBP12.84□□□□□ -0.35
ACTN1-218ENST00000556343 ABCC11Q96J66 1382 aa12.83□□□□□ -0.36
ACTN1-218ENST00000556343 YTHDC2Q9H6S0 1430 aaKnown RBP12.83□□□□□ -0.36
ACTN1-218ENST00000556343 ADAMTS13Q76LX8 1427 aa12.82□□□□□ -0.36
ACTN1-218ENST00000556343 AMOTL2Q9Y2J4 779 aa12.82□□□□□ -0.36
ACTN1-218ENST00000556343 MED14O60244 1454 aa12.82□□□□□ -0.36
ACTN1-218ENST00000556343 METP08581 1390 aa12.81□□□□□ -0.36
ACTN1-218ENST00000556343 DIP2AQ14689 1571 aa12.81□□□□□ -0.36
ACTN1-218ENST00000556343 ADGRB1O14514 1584 aa12.81□□□□□ -0.36
ACTN1-218ENST00000556343 LMTK3Q96Q04 1460 aa12.8□□□□□ -0.36
ACTN1-218ENST00000556343 PRAM1Q96QH2 718 aa12.8□□□□□ -0.36
ACTN1-218ENST00000556343 KCNA6P17658 529 aa12.79□□□□□ -0.36
ACTN1-218ENST00000556343 TESK2Q96S53 571 aa12.78□□□□□ -0.36
ACTN1-218ENST00000556343 POLR3GLQ9BT43 218 aa12.78□□□□□ -0.36
ACTN1-218ENST00000556343 EVC2Q86UK5 1308 aa12.78□□□□□ -0.36
ACTN1-218ENST00000556343 SBNO2Q9Y2G9 1366 aa12.78□□□□□ -0.36
ACTN1-218ENST00000556343 FAM135BQ49AJ0 1406 aa12.78□□□□□ -0.36
ACTN1-218ENST00000556343 PUS7Q96PZ0 661 aaKnown RBP12.77□□□□□ -0.37
ACTN1-218ENST00000556343 DLC1Q96QB1 1528 aa12.77□□□□□ -0.37
ACTN1-218ENST00000556343 SAFB2Q14151 953 aaKnown RBP eCLIP12.76□□□□□ -0.37
ACTN1-218ENST00000556343 TECPR2O15040 1411 aa12.76□□□□□ -0.37
ACTN1-218ENST00000556343 IQGAP1P46940 1657 aa12.75□□□□□ -0.37
ACTN1-218ENST00000556343 WAPLQ7Z5K2 1190 aa12.75□□□□□ -0.37
ACTN1-218ENST00000556343 NRXN3Q9Y4C0 1643 aa12.75□□□□□ -0.37
ACTN1-218ENST00000556343 CCDC7Q96M83 1385 aa12.74□□□□□ -0.37
ACTN1-218ENST00000556343 ASXL1Q8IXJ9 1541 aa12.73□□□□□ -0.37
ACTN1-218ENST00000556343 KIF7Q2M1P5 1343 aa12.73□□□□□ -0.37
ACTN1-218ENST00000556343 MINK1Q8N4C8 1332 aaPredicted RBP12.73□□□□□ -0.37
ACTN1-218ENST00000556343 POLR1AO95602 1720 aaPredicted RBP12.73□□□□□ -0.37
ACTN1-218ENST00000556343 PTCH1Q13635 1447 aa12.72□□□□□ -0.37
ACTN1-218ENST00000556343 WASHC2AQ641Q2 1341 aa12.72□□□□□ -0.37
ACTN1-218ENST00000556343 SRPK2P78362 688 aaKnown RBP12.72□□□□□ -0.37
ACTN1-218ENST00000556343 DDX10Q13206 875 aaKnown RBP12.72□□□□□ -0.37
ACTN1-218ENST00000556343 PROSER2Q86WR7 435 aaPredicted RBP12.72□□□□□ -0.37
ACTN1-218ENST00000556343 PTPRUQ92729 1446 aa12.71□□□□□ -0.37
ACTN1-218ENST00000556343 ROBO2Q9HCK4 1378 aa12.71□□□□□ -0.37
ACTN1-218ENST00000556343 C11orf95C9JLR9 678 aaPredicted RBP12.71□□□□□ -0.37
ACTN1-218ENST00000556343 DIEXFQ68CQ4 756 aaKnown RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms