RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 ANP32CO43423 234 aa20.52■□□□□ 0.88
VPS33B-205ENST00000556096 CENPBP07199 599 aaPredicted RBP20.52■□□□□ 0.88
VPS33B-205ENST00000556096 PIK3C2BO00750 1634 aa20.51■□□□□ 0.87
VPS33B-205ENST00000556096 KIF7Q2M1P5 1343 aa20.51■□□□□ 0.87
VPS33B-205ENST00000556096 ERVK-7P63135 1459 aa20.5■□□□□ 0.87
VPS33B-205ENST00000556096 SPATA31D1Q6ZQQ2 1576 aa20.48■□□□□ 0.87
VPS33B-205ENST00000556096 NBPF1Q3BBV0 1214 aa20.47■□□□□ 0.87
VPS33B-205ENST00000556096 CCER2I3L3R5 266 aa20.47■□□□□ 0.87
VPS33B-205ENST00000556096 ST20-MTHFSA0A0A6YYL1 179 aa20.46■□□□□ 0.87
VPS33B-205ENST00000556096 MYOM2P54296 1465 aa20.45■□□□□ 0.86
VPS33B-205ENST00000556096 ADGRB3O60242 1522 aa20.45■□□□□ 0.86
VPS33B-205ENST00000556096 MYO5BQ9ULV0 1848 aa20.43■□□□□ 0.86
VPS33B-205ENST00000556096 TNRQ92752 1358 aa20.43■□□□□ 0.86
VPS33B-205ENST00000556096 YTHDC1Q96MU7 727 aaKnown RBP20.43■□□□□ 0.86
VPS33B-205ENST00000556096 IFT172Q9UG01 1749 aa20.42■□□□□ 0.86
VPS33B-205ENST00000556096 KIAA1210Q9ULL0 1709 aa20.42■□□□□ 0.86
VPS33B-205ENST00000556096 RPGRIP1LQ68CZ1 1315 aa20.4■□□□□ 0.86
VPS33B-205ENST00000556096 MYO3AQ8NEV4 1616 aa20.4■□□□□ 0.86
VPS33B-205ENST00000556096 SLC52A1Q9NWF4 448 aa20.39■□□□□ 0.86
VPS33B-205ENST00000556096 NRXN1Q9ULB1 1477 aa20.39■□□□□ 0.85
VPS33B-205ENST00000556096 TMEM131LA2VDJ0 1609 aa20.38■□□□□ 0.85
VPS33B-205ENST00000556096 CHGAP10645 457 aaKnown RBP20.37■□□□□ 0.85
VPS33B-205ENST00000556096 IDI1Q13907 227 aa20.37■□□□□ 0.85
VPS33B-205ENST00000556096 PPLO60437 1756 aa20.36■□□□□ 0.85
VPS33B-205ENST00000556096 HSPA2P54652 639 aa20.35■□□□□ 0.85
VPS33B-205ENST00000556096 SETD1BQ9UPS6 1966 aaKnown RBP20.35■□□□□ 0.85
VPS33B-205ENST00000556096 IQGAP1P46940 1657 aa20.34■□□□□ 0.85
VPS33B-205ENST00000556096 ADGRF5Q8IZF2 1346 aa20.34■□□□□ 0.85
VPS33B-205ENST00000556096 SCAF11Q99590 1463 aaKnown RBP20.34■□□□□ 0.85
VPS33B-205ENST00000556096 TESK2Q96S53 571 aa20.33■□□□□ 0.85
VPS33B-205ENST00000556096 LMTK3Q96Q04 1460 aa20.33■□□□□ 0.85
VPS33B-205ENST00000556096 CEP170BQ9Y4F5 1589 aaPredicted RBP20.32■□□□□ 0.84
VPS33B-205ENST00000556096 NEXMIFQ5QGS0 1516 aa20.3■□□□□ 0.84
VPS33B-205ENST00000556096 PRKRIP1Q9H875 184 aaPredicted RBP20.3■□□□□ 0.84
VPS33B-205ENST00000556096 A2ML1A8K2U0 1454 aa20.29■□□□□ 0.84
VPS33B-205ENST00000556096 NLRP1Q9C000 1473 aa20.29■□□□□ 0.84
VPS33B-205ENST00000556096 UBR1Q8IWV7 1749 aa20.29■□□□□ 0.84
VPS33B-205ENST00000556096 POLR3GLQ9BT43 218 aa20.29■□□□□ 0.84
VPS33B-205ENST00000556096 STAG3Q9UJ98 1225 aa20.29■□□□□ 0.84
VPS33B-205ENST00000556096 KDM5AP29375 1690 aaKnown RBP20.28■□□□□ 0.84
VPS33B-205ENST00000556096 CFAP70Q5T0N1 1121 aa20.28■□□□□ 0.84
VPS33B-205ENST00000556096 ZNF142P52746 1687 aaPredicted RBP20.28■□□□□ 0.84
VPS33B-205ENST00000556096 PIK3C2GO75747 1445 aa20.28■□□□□ 0.84
VPS33B-205ENST00000556096 TMF1P82094 1093 aa20.27■□□□□ 0.84
VPS33B-205ENST00000556096 EIF3AQ14152 1382 aaKnown RBP20.27■□□□□ 0.84
VPS33B-205ENST00000556096 SETBP1Q9Y6X0 1596 aa20.27■□□□□ 0.84
VPS33B-205ENST00000556096 VGFO15240 615 aaPredicted RBP20.26■□□□□ 0.83
VPS33B-205ENST00000556096 C14orf93Q9H972 538 aaKnown RBP20.25■□□□□ 0.83
VPS33B-205ENST00000556096 ZFYVE9O95405 1425 aa20.25■□□□□ 0.83
VPS33B-205ENST00000556096 SLC24A1O60721 1099 aa20.24■□□□□ 0.83
VPS33B-205ENST00000556096 DISP3Q9P2K9 1392 aa20.24■□□□□ 0.83
VPS33B-205ENST00000556096 SENP3Q9H4L4 574 aaPredicted RBP20.23■□□□□ 0.83
VPS33B-205ENST00000556096 NUTM2DQ5VT03 806 aaPredicted RBP20.21■□□□□ 0.83
VPS33B-205ENST00000556096 CDCA8Q53HL2 280 aa20.2■□□□□ 0.82
VPS33B-205ENST00000556096 THEMISQ8N1K5 641 aaPredicted RBP20.19■□□□□ 0.82
VPS33B-205ENST00000556096 NCKAP5LQ9HCH0 1330 aa20.19■□□□□ 0.82
VPS33B-205ENST00000556096 ADGRB1O14514 1584 aa20.18■□□□□ 0.82
VPS33B-205ENST00000556096 RIMS2Q9UQ26 1411 aa20.18■□□□□ 0.82
VPS33B-205ENST00000556096 KTN1Q86UP2 1357 aaKnown RBP20.17■□□□□ 0.82
VPS33B-205ENST00000556096 SBNO2Q9Y2G9 1366 aa20.16■□□□□ 0.82
VPS33B-205ENST00000556096 TMEM2Q9UHN6 1383 aa20.14■□□□□ 0.82
VPS33B-205ENST00000556096 PER1O15534 1290 aaPredicted RBP20.13■□□□□ 0.81
VPS33B-205ENST00000556096 LTKP29376 864 aa20.13■□□□□ 0.81
VPS33B-205ENST00000556096 STRCQ7RTU9 1775 aa20.13■□□□□ 0.81
VPS33B-205ENST00000556096 TXNDC2Q86VQ3 553 aa20.13■□□□□ 0.81
VPS33B-205ENST00000556096 SCAF1Q9H7N4 1312 aaKnown RBP20.12■□□□□ 0.81
VPS33B-205ENST00000556096 RALBP1Q15311 655 aa20.11■□□□□ 0.81
VPS33B-205ENST00000556096 SLIT1O75093 1534 aa20.11■□□□□ 0.81
VPS33B-205ENST00000556096 CCDC184Q52MB2 194 aa20.1■□□□□ 0.81
VPS33B-205ENST00000556096 ANKLE2Q86XL3 938 aa20.1■□□□□ 0.81
VPS33B-205ENST00000556096 ARHGAP23Q9P227 1491 aa20.1■□□□□ 0.81
VPS33B-205ENST00000556096 CENPJQ9HC77 1338 aaPredicted RBP20.1■□□□□ 0.81
VPS33B-205ENST00000556096 PANK3Q9H999 370 aa20.09■□□□□ 0.81
VPS33B-205ENST00000556096 MRS2Q9HD23 443 aa20.09■□□□□ 0.81
VPS33B-205ENST00000556096 NRXN3Q9Y4C0 1643 aa20.09■□□□□ 0.81
VPS33B-205ENST00000556096 SETD1AO15047 1707 aaKnown RBP20.08■□□□□ 0.81
VPS33B-205ENST00000556096 TMEM132EQ6IEE7 984 aa20.08■□□□□ 0.81
VPS33B-205ENST00000556096 TRAK1Q9UPV9 953 aa20.08■□□□□ 0.81
VPS33B-205ENST00000556096 EID1Q9Y6B2 187 aa20.08■□□□□ 0.81
VPS33B-205ENST00000556096 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.07■□□□□ 0.8
VPS33B-205ENST00000556096 BCANQ96GW7 911 aa20.07■□□□□ 0.8
VPS33B-205ENST00000556096 ALKQ9UM73 1620 aa20.07■□□□□ 0.8
VPS33B-205ENST00000556096 ASXL1Q8IXJ9 1541 aa20.06■□□□□ 0.8
VPS33B-205ENST00000556096 HDGFP51858 240 aaKnown RBP20.05■□□□□ 0.8
VPS33B-205ENST00000556096 MYBBP1AQ9BQG0 1328 aaKnown RBP20.04■□□□□ 0.8
VPS33B-205ENST00000556096 PARD3Q8TEW0 1356 aa20.04■□□□□ 0.8
VPS33B-205ENST00000556096 GTF3C3Q9Y5Q9 886 aa20.04■□□□□ 0.8
VPS33B-205ENST00000556096 QRICH2Q9H0J4 1663 aa20.03■□□□□ 0.8
VPS33B-205ENST00000556096 NPHP4O75161 1426 aaPredicted RBP20.03■□□□□ 0.8
VPS33B-205ENST00000556096 MYOM1P52179 1685 aa20.02■□□□□ 0.8
VPS33B-205ENST00000556096 ARHGEF28Q8N1W1 1705 aaKnown RBP20.02■□□□□ 0.8
VPS33B-205ENST00000556096 PUS7Q96PZ0 661 aaKnown RBP20.02■□□□□ 0.79
VPS33B-205ENST00000556096 BRD4O60885 1362 aaPredicted RBP20.01■□□□□ 0.79
VPS33B-205ENST00000556096 SLC26A8Q96RN1 970 aa20.01■□□□□ 0.79
VPS33B-205ENST00000556096 PLEKHG1Q9ULL1 1385 aa20■□□□□ 0.79
VPS33B-205ENST00000556096 CNGB1Q14028 1251 aaPredicted RBP19.99■□□□□ 0.79
VPS33B-205ENST00000556096 MED14O60244 1454 aa19.98■□□□□ 0.79
VPS33B-205ENST00000556096 FAM9BQ8IZU0 186 aa19.98■□□□□ 0.79
VPS33B-205ENST00000556096 YTHDC2Q9H6S0 1430 aaKnown RBP19.98■□□□□ 0.79
VPS33B-205ENST00000556096 KNSTRNQ9Y448 316 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms