RNA–Protein interactions for RNA: ENST00000556082.5

ATXN3-235, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 660 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-235ENST00000556082 ZNF316A6NFI3 1004 aaPredicted RBP12.09□□□□□ -0.47
ATXN3-235ENST00000556082 ABCC2Q92887 1545 aa12.09□□□□□ -0.47
ATXN3-235ENST00000556082 ABCC5O15440 1437 aa12.09□□□□□ -0.47
ATXN3-235ENST00000556082 DAPK1P53355 1430 aa12.09□□□□□ -0.47
ATXN3-235ENST00000556082 PPP1R37O75864 691 aa12.08□□□□□ -0.48
ATXN3-235ENST00000556082 MMRN1Q13201 1228 aa12.08□□□□□ -0.48
ATXN3-235ENST00000556082 ARSIQ5FYB1 569 aa12.07□□□□□ -0.48
ATXN3-235ENST00000556082 VARS2Q5ST30 1063 aaKnown RBP12.07□□□□□ -0.48
ATXN3-235ENST00000556082 ITSN2Q9NZM3 1697 aa12.06□□□□□ -0.48
ATXN3-235ENST00000556082 ERCC6L2Q5T890 1561 aa12.06□□□□□ -0.48
ATXN3-235ENST00000556082 ZNF687Q8N1G0 1237 aa12.06□□□□□ -0.48
ATXN3-235ENST00000556082 DNMT1P26358 1616 aaKnown RBP12.06□□□□□ -0.48
ATXN3-235ENST00000556082 KIF14Q15058 1648 aa12.06□□□□□ -0.48
ATXN3-235ENST00000556082 ZNF644Q9H582 1327 aaPredicted RBP12.06□□□□□ -0.48
ATXN3-235ENST00000556082 CAMSAP2Q08AD1 1489 aa12.04□□□□□ -0.48
ATXN3-235ENST00000556082 RSPH4AQ5TD94 716 aa12.04□□□□□ -0.48
ATXN3-235ENST00000556082 RRP7BPQ9NSQ0 103 aa12.04□□□□□ -0.48
ATXN3-235ENST00000556082 KDM5BQ9UGL1 1544 aa12.03□□□□□ -0.48
ATXN3-235ENST00000556082 CHIC2Q9UKJ5 165 aa12.03□□□□□ -0.48
ATXN3-235ENST00000556082 GCC2Q8IWJ2 1684 aa12.03□□□□□ -0.48
ATXN3-235ENST00000556082 ADGRL2O95490 1459 aa12.02□□□□□ -0.48
ATXN3-235ENST00000556082 NCOA1Q15788 1441 aa12.02□□□□□ -0.49
ATXN3-235ENST00000556082 SHANK2Q9UPX8 1470 aa12.01□□□□□ -0.49
ATXN3-235ENST00000556082 FOXK1P85037 733 aa12□□□□□ -0.49
ATXN3-235ENST00000556082 GPHNQ9NQX3 736 aaPredicted RBP12□□□□□ -0.49
ATXN3-235ENST00000556082 ANKRD30AQ9BXX3 1397 aa11.99□□□□□ -0.49
ATXN3-235ENST00000556082 CDC42BPAQ5VT25 1732 aa11.98□□□□□ -0.49
ATXN3-235ENST00000556082 DIEXFQ68CQ4 756 aaKnown RBP11.98□□□□□ -0.49
ATXN3-235ENST00000556082 PCDHGA4Q9Y5G9 962 aa11.98□□□□□ -0.49
ATXN3-235ENST00000556082 ARHGEF5Q12774 1597 aa11.97□□□□□ -0.49
ATXN3-235ENST00000556082 MBD5Q9P267 1494 aa11.97□□□□□ -0.49
ATXN3-235ENST00000556082 KIAA1107Q9UPP5 1409 aa11.97□□□□□ -0.49
ATXN3-235ENST00000556082 SIN3AQ96ST3 1273 aa11.97□□□□□ -0.49
ATXN3-235ENST00000556082 MPHOSPH9Q99550 1183 aa11.97□□□□□ -0.49
ATXN3-235ENST00000556082 ZNF777Q9ULD5 760 aaPredicted RBP11.97□□□□□ -0.49
ATXN3-235ENST00000556082 TSPY4P0CV99 314 aa11.96□□□□□ -0.49
ATXN3-235ENST00000556082 TSPY10P0CW01 314 aa11.96□□□□□ -0.49
ATXN3-235ENST00000556082 NKX1-1Q15270 411 aaPredicted RBP11.96□□□□□ -0.49
ATXN3-235ENST00000556082 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.96□□□□□ -0.5
ATXN3-235ENST00000556082 PLEKHH2Q8IVE3 1493 aa11.95□□□□□ -0.5
ATXN3-235ENST00000556082 PPP1R15AO75807 674 aaPredicted RBP11.95□□□□□ -0.5
ATXN3-235ENST00000556082 PTCD2Q8WV60 388 aaKnown RBP11.95□□□□□ -0.5
ATXN3-235ENST00000556082 PLCH2O75038 1416 aa11.94□□□□□ -0.5
ATXN3-235ENST00000556082 PREX2Q70Z35 1606 aa11.94□□□□□ -0.5
ATXN3-235ENST00000556082 PSDA5PKW4 1024 aaPredicted RBP11.94□□□□□ -0.5
ATXN3-235ENST00000556082 TRIM52Q96A61 297 aa11.94□□□□□ -0.5
ATXN3-235ENST00000556082 DENND4BO75064 1496 aaPredicted RBP11.94□□□□□ -0.5
ATXN3-235ENST00000556082 C9orf84Q5VXU9 1444 aa11.94□□□□□ -0.5
ATXN3-235ENST00000556082 ZCCHC11Q5TAX3 1644 aaKnown RBP11.93□□□□□ -0.5
ATXN3-235ENST00000556082 PTGER2P43116 358 aa11.93□□□□□ -0.5
ATXN3-235ENST00000556082 NEUROD1Q13562 356 aa11.93□□□□□ -0.5
ATXN3-235ENST00000556082 KHSRPQ92945 711 aaKnown RBP eCLIP11.93□□□□□ -0.5
ATXN3-235ENST00000556082 CROCC2H7BZ55 1655 aa11.93□□□□□ -0.5
ATXN3-235ENST00000556082 ADGBQ8N7X0 1667 aa11.93□□□□□ -0.5
ATXN3-235ENST00000556082 KDM6BO15054 1643 aa11.93□□□□□ -0.5
ATXN3-235ENST00000556082 ARAP3Q8WWN8 1544 aa11.92□□□□□ -0.5
ATXN3-235ENST00000556082 TBC1D12O60347 775 aa11.92□□□□□ -0.5
ATXN3-235ENST00000556082 NUDT7P0C024 238 aa11.92□□□□□ -0.5
ATXN3-235ENST00000556082 EFCAB2Q5VUJ9 269 aa11.92□□□□□ -0.5
ATXN3-235ENST00000556082 PLPP6Q8IY26 295 aa11.92□□□□□ -0.5
ATXN3-235ENST00000556082 CCDC141Q6ZP82 1450 aa11.91□□□□□ -0.5
ATXN3-235ENST00000556082 PBX2P40425 430 aa11.91□□□□□ -0.5
ATXN3-235ENST00000556082 HNRNPMP52272 730 aaKnown RBP eCLIP11.91□□□□□ -0.5
ATXN3-235ENST00000556082 ANKRD50Q9ULJ7 1429 aa11.91□□□□□ -0.5
ATXN3-235ENST00000556082 SAMD9LQ8IVG5 1584 aa11.91□□□□□ -0.5
ATXN3-235ENST00000556082 CDC42BPBQ9Y5S2 1711 aa11.91□□□□□ -0.5
ATXN3-235ENST00000556082 TTC37Q6PGP7 1564 aa11.9□□□□□ -0.5
ATXN3-235ENST00000556082 TONSLQ96HA7 1378 aa11.9□□□□□ -0.5
ATXN3-235ENST00000556082 ANKRD30BQ9BXX2 1392 aa11.9□□□□□ -0.5
ATXN3-235ENST00000556082 MAST1Q9Y2H9 1570 aa11.89□□□□□ -0.51
ATXN3-235ENST00000556082 KCNH8Q96L42 1107 aa11.89□□□□□ -0.51
ATXN3-235ENST00000556082 ARHGAP5Q13017 1502 aa11.89□□□□□ -0.51
ATXN3-235ENST00000556082 WDR7Q9Y4E6 1490 aa11.89□□□□□ -0.51
ATXN3-235ENST00000556082 LHX6Q9UPM6 363 aa11.88□□□□□ -0.51
ATXN3-235ENST00000556082 PZPP20742 1482 aa11.88□□□□□ -0.51
ATXN3-235ENST00000556082 DSG2Q14126 1118 aa11.87□□□□□ -0.51
ATXN3-235ENST00000556082 KIF15Q9NS87 1388 aa11.87□□□□□ -0.51
ATXN3-235ENST00000556082 MYO5CQ9NQX4 1742 aa11.86□□□□□ -0.51
ATXN3-235ENST00000556082 KDM4FA0A1W2PPD8 638 aa11.86□□□□□ -0.51
ATXN3-235ENST00000556082 PDE4AP27815 886 aa11.86□□□□□ -0.51
ATXN3-235ENST00000556082 KDM5DQ9BY66 1539 aa11.86□□□□□ -0.51
ATXN3-235ENST00000556082 GTPBP6O43824 516 aaPredicted RBP11.85□□□□□ -0.51
ATXN3-235ENST00000556082 CRISPLD2Q9H0B8 497 aa11.85□□□□□ -0.51
ATXN3-235ENST00000556082 RPRD2Q5VT52 1461 aaKnown RBP11.84□□□□□ -0.51
ATXN3-235ENST00000556082 ASXL2Q76L83 1435 aa11.84□□□□□ -0.51
ATXN3-235ENST00000556082 SYCP2Q9BX26 1530 aa11.83□□□□□ -0.52
ATXN3-235ENST00000556082 ARHGEF12Q9NZN5 1544 aa11.83□□□□□ -0.52
ATXN3-235ENST00000556082 LSM11P83369 360 aaKnown RBP eCLIP11.83□□□□□ -0.52
ATXN3-235ENST00000556082 RTEL1-TNFRSF6BF6WH68 1400 aa11.83□□□□□ -0.52
ATXN3-235ENST00000556082 NUP155O75694 1391 aa11.82□□□□□ -0.52
ATXN3-235ENST00000556082 MYT1LQ9UL68 1186 aa11.82□□□□□ -0.52
ATXN3-235ENST00000556082 ABCA9Q8IUA7 1624 aa11.82□□□□□ -0.52
ATXN3-235ENST00000556082 ABCC1P33527 1531 aa11.81□□□□□ -0.52
ATXN3-235ENST00000556082 PLXNC1O60486 1568 aa11.81□□□□□ -0.52
ATXN3-235ENST00000556082 ANKRD13DQ6ZTN6 518 aa11.8□□□□□ -0.52
ATXN3-235ENST00000556082 RNF166Q96A37 237 aaPredicted RBP11.8□□□□□ -0.52
ATXN3-235ENST00000556082 L3MBTL2Q969R5 705 aa11.79□□□□□ -0.52
ATXN3-235ENST00000556082 DUOX2Q9NRD8 1548 aa11.79□□□□□ -0.52
ATXN3-235ENST00000556082 ERBINQ96RT1 1412 aa11.78□□□□□ -0.52
ATXN3-235ENST00000556082 TRAPPC8Q9Y2L5 1435 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 159.9 ms