RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 ZEB1P37275 1124 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-216ENST00000554975 SRCAPQ6ZRS2 3230 aa16.95■□□□□ 0.3
SHMT2-216ENST00000554975 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-216ENST00000554975 LMTK2Q8IWU2 1503 aa16.95■□□□□ 0.3
SHMT2-216ENST00000554975 MYOM3Q5VTT5 1437 aa16.95■□□□□ 0.3
SHMT2-216ENST00000554975 RRP7BPQ9NSQ0 103 aa16.94■□□□□ 0.3
SHMT2-216ENST00000554975 AHDC1Q5TGY3 1603 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-216ENST00000554975 NOS1P29475 1434 aa16.94■□□□□ 0.3
SHMT2-216ENST00000554975 GCC2Q8IWJ2 1684 aa16.94■□□□□ 0.3
SHMT2-216ENST00000554975 KANK4Q5T7N3 995 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-216ENST00000554975 ABCC5O15440 1437 aa16.93■□□□□ 0.3
SHMT2-216ENST00000554975 FGD6Q6ZV73 1430 aa16.93■□□□□ 0.3
SHMT2-216ENST00000554975 DIP2AQ14689 1571 aa16.93■□□□□ 0.3
SHMT2-216ENST00000554975 VPS8Q8N3P4 1428 aa16.92■□□□□ 0.3
SHMT2-216ENST00000554975 SPATA31A6Q5VVP1 1343 aa16.92■□□□□ 0.3
SHMT2-216ENST00000554975 ZFYVE9O95405 1425 aa16.91■□□□□ 0.3
SHMT2-216ENST00000554975 MEX3CQ5U5Q3 659 aaKnown RBP16.91■□□□□ 0.3
SHMT2-216ENST00000554975 ZNF772Q68DY9 489 aaPredicted RBP16.91■□□□□ 0.3
SHMT2-216ENST00000554975 PTPN23Q9H3S7 1636 aa16.89■□□□□ 0.29
SHMT2-216ENST00000554975 BCANQ96GW7 911 aa16.89■□□□□ 0.29
SHMT2-216ENST00000554975 KANK1Q14678 1352 aa16.89■□□□□ 0.29
SHMT2-216ENST00000554975 CDK12Q9NYV4 1490 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-216ENST00000554975 RXRBP28702 533 aa16.87■□□□□ 0.29
SHMT2-216ENST00000554975 TMEM131LA2VDJ0 1609 aa16.87■□□□□ 0.29
SHMT2-216ENST00000554975 PLEKHG1Q9ULL1 1385 aa16.87■□□□□ 0.29
SHMT2-216ENST00000554975 DAPK1P53355 1430 aa16.87■□□□□ 0.29
SHMT2-216ENST00000554975 RIMS2Q9UQ26 1411 aa16.85■□□□□ 0.29
SHMT2-216ENST00000554975 RGS12O14924 1447 aa16.84■□□□□ 0.29
SHMT2-216ENST00000554975 NUTM2BA6NNL0 878 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-216ENST00000554975 NUTM2EB1AL46 878 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-216ENST00000554975 NUTM2AQ8IVF1 878 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-216ENST00000554975 NCOA3Q9Y6Q9 1424 aa16.83■□□□□ 0.28
SHMT2-216ENST00000554975 NHSL1Q5SYE7 1610 aa16.82■□□□□ 0.28
SHMT2-216ENST00000554975 ADAMTS13Q76LX8 1427 aa16.82■□□□□ 0.28
SHMT2-216ENST00000554975 AFF2P51816 1311 aa16.82■□□□□ 0.28
SHMT2-216ENST00000554975 APLP2Q06481 763 aa16.81■□□□□ 0.28
SHMT2-216ENST00000554975 C14orf37Q86TY3 774 aa16.81■□□□□ 0.28
SHMT2-216ENST00000554975 SLC52A1Q9NWF4 448 aa16.81■□□□□ 0.28
SHMT2-216ENST00000554975 CHIC2Q9UKJ5 165 aa16.81■□□□□ 0.28
SHMT2-216ENST00000554975 BRINP3Q76B58 766 aa16.8■□□□□ 0.28
SHMT2-216ENST00000554975 TBX22Q9Y458 520 aa16.8■□□□□ 0.28
SHMT2-216ENST00000554975 CADPS2Q86UW7 1296 aa16.79■□□□□ 0.28
SHMT2-216ENST00000554975 ASXL1Q8IXJ9 1541 aa16.79■□□□□ 0.28
SHMT2-216ENST00000554975 PPP1R15AO75807 674 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-216ENST00000554975 NUTM2DQ5VT03 806 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-216ENST00000554975 C19orf44Q9H6X5 657 aa16.78■□□□□ 0.28
SHMT2-216ENST00000554975 PTPRUQ92729 1446 aa16.78■□□□□ 0.28
SHMT2-216ENST00000554975 ATF3P18847 181 aa16.77■□□□□ 0.28
SHMT2-216ENST00000554975 RPRD2Q5VT52 1461 aaKnown RBP16.77■□□□□ 0.28
SHMT2-216ENST00000554975 ANKRD30AQ9BXX3 1397 aa16.77■□□□□ 0.27
SHMT2-216ENST00000554975 SETD5Q9C0A6 1442 aa16.75■□□□□ 0.27
SHMT2-216ENST00000554975 E9PCH4 1651 aa16.75■□□□□ 0.27
SHMT2-216ENST00000554975 XRN1Q8IZH2 1706 aaKnown RBP16.74■□□□□ 0.27
SHMT2-216ENST00000554975 UNC13BO14795 1591 aa16.74■□□□□ 0.27
SHMT2-216ENST00000554975 NRXN3Q9Y4C0 1643 aa16.74■□□□□ 0.27
SHMT2-216ENST00000554975 MST1RQ04912 1400 aa16.73■□□□□ 0.27
SHMT2-216ENST00000554975 TRPM2O94759 1503 aa16.73■□□□□ 0.27
SHMT2-216ENST00000554975 DDX17Q92841 729 aaKnown RBP16.72■□□□□ 0.27
SHMT2-216ENST00000554975 C8orf37Q96NL8 207 aa16.72■□□□□ 0.27
SHMT2-216ENST00000554975 QTRT2Q9H974 415 aaKnown RBP16.72■□□□□ 0.27
SHMT2-216ENST00000554975 PIK3R4Q99570 1358 aa16.72■□□□□ 0.27
SHMT2-216ENST00000554975 ADGRL2O95490 1459 aa16.72■□□□□ 0.27
SHMT2-216ENST00000554975 SETBP1Q9Y6X0 1596 aa16.72■□□□□ 0.27
SHMT2-216ENST00000554975 EP400Q96L91 3159 aa16.71■□□□□ 0.27
SHMT2-216ENST00000554975 CHGAP10645 457 aaKnown RBP16.71■□□□□ 0.27
SHMT2-216ENST00000554975 RBM6P78332 1123 aaKnown RBP16.71■□□□□ 0.27
SHMT2-216ENST00000554975 AMOTL2Q9Y2J4 779 aa16.71■□□□□ 0.27
SHMT2-216ENST00000554975 PNPLA6Q8IY17 1366 aa16.7■□□□□ 0.26
SHMT2-216ENST00000554975 NALCNQ8IZF0 1738 aa16.7■□□□□ 0.26
SHMT2-216ENST00000554975 DCCP43146 1447 aa16.7■□□□□ 0.26
SHMT2-216ENST00000554975 HDGFP51858 240 aaKnown RBP16.69■□□□□ 0.26
SHMT2-216ENST00000554975 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.68■□□□□ 0.26
SHMT2-216ENST00000554975 ANKRD50Q9ULJ7 1429 aa16.68■□□□□ 0.26
SHMT2-216ENST00000554975 LRRC59Q96AG4 307 aaKnown RBP16.65■□□□□ 0.26
SHMT2-216ENST00000554975 ATAD2Q6PL18 1390 aa16.64■□□□□ 0.26
SHMT2-216ENST00000554975 ADAMTS2O95450 1211 aa16.64■□□□□ 0.25
SHMT2-216ENST00000554975 LAMC1P11047 1609 aa16.63■□□□□ 0.25
SHMT2-216ENST00000554975 NGLY1Q96IV0 654 aa16.62■□□□□ 0.25
SHMT2-216ENST00000554975 IQGAP3Q86VI3 1631 aa16.62■□□□□ 0.25
SHMT2-216ENST00000554975 METP08581 1390 aa16.61■□□□□ 0.25
SHMT2-216ENST00000554975 ADGRL3Q9HAR2 1447 aa16.61■□□□□ 0.25
SHMT2-216ENST00000554975 ZRANB1Q9UGI0 708 aa16.59■□□□□ 0.25
SHMT2-216ENST00000554975 ATRNO75882 1429 aa16.59■□□□□ 0.25
SHMT2-216ENST00000554975 MARF1Q9Y4F3 1742 aaKnown RBP16.59■□□□□ 0.25
SHMT2-216ENST00000554975 USP21Q9UK80 565 aa16.58■□□□□ 0.24
SHMT2-216ENST00000554975 SPHKAPQ2M3C7 1700 aa16.57■□□□□ 0.24
SHMT2-216ENST00000554975 C1orf167Q5SNV9 1468 aa16.57■□□□□ 0.24
SHMT2-216ENST00000554975 COL22A1Q8NFW1 1626 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-216ENST00000554975 BRWD3Q6RI45 1802 aa16.55■□□□□ 0.24
SHMT2-216ENST00000554975 FAM50AQ14320 339 aaKnown RBP16.55■□□□□ 0.24
SHMT2-216ENST00000554975 TRPC5Q9UL62 973 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-216ENST00000554975 FNBP4Q8N3X1 1017 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-216ENST00000554975 SOS2Q07890 1332 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-216ENST00000554975 PTCH1Q13635 1447 aa16.53■□□□□ 0.24
SHMT2-216ENST00000554975 NEXMIFQ5QGS0 1516 aa16.52■□□□□ 0.24
SHMT2-216ENST00000554975 ORAI2Q96SN7 254 aa16.52■□□□□ 0.24
SHMT2-216ENST00000554975 BCL9LQ86UU0 1499 aa16.51■□□□□ 0.23
SHMT2-216ENST00000554975 MYOM2P54296 1465 aa16.5■□□□□ 0.23
SHMT2-216ENST00000554975 PPARGC1BQ86YN6 1023 aaKnown RBP16.49■□□□□ 0.23
SHMT2-216ENST00000554975 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms