RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 CFAP70Q5T0N1 1121 aa12.34□□□□□ -0.43
SYNE2-213ENST00000554805 PLPPR3Q6T4P5 718 aa12.34□□□□□ -0.43
SYNE2-213ENST00000554805 BCAR3O75815 825 aa12.34□□□□□ -0.43
SYNE2-213ENST00000554805 SLFN5Q08AF3 891 aa12.34□□□□□ -0.43
SYNE2-213ENST00000554805 USP35Q9P2H5 1018 aa12.34□□□□□ -0.43
SYNE2-213ENST00000554805 MAGI2Q86UL8 1455 aa12.33□□□□□ -0.44
SYNE2-213ENST00000554805 PRDM15P57071 1507 aaPredicted RBP12.33□□□□□ -0.44
SYNE2-213ENST00000554805 FRAT1Q92837 279 aaPredicted RBP12.33□□□□□ -0.44
SYNE2-213ENST00000554805 CDC42BPBQ9Y5S2 1711 aa12.33□□□□□ -0.44
SYNE2-213ENST00000554805 PREX2Q70Z35 1606 aa12.32□□□□□ -0.44
SYNE2-213ENST00000554805 KANK1Q14678 1352 aa12.32□□□□□ -0.44
SYNE2-213ENST00000554805 DUOX2Q9NRD8 1548 aa12.32□□□□□ -0.44
SYNE2-213ENST00000554805 SLC24A1O60721 1099 aa12.32□□□□□ -0.44
SYNE2-213ENST00000554805 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.32□□□□□ -0.44
SYNE2-213ENST00000554805 EIF3AQ14152 1382 aaKnown RBP12.32□□□□□ -0.44
SYNE2-213ENST00000554805 TTC37Q6PGP7 1564 aa12.31□□□□□ -0.44
SYNE2-213ENST00000554805 TRAPPC8Q9Y2L5 1435 aa12.31□□□□□ -0.44
SYNE2-213ENST00000554805 SPINK5Q9NQ38 1064 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-213ENST00000554805 INSRP06213 1382 aa12.31□□□□□ -0.44
SYNE2-213ENST00000554805 IL27Q8NEV9 243 aa12.31□□□□□ -0.44
SYNE2-213ENST00000554805 EIF2AK4Q9P2K8 1649 aaKnown RBP12.3□□□□□ -0.44
SYNE2-213ENST00000554805 RRP7AQ9Y3A4 280 aaKnown RBP12.3□□□□□ -0.44
SYNE2-213ENST00000554805 E9PSI1 815 aa12.3□□□□□ -0.44
SYNE2-213ENST00000554805 KDM2BQ8NHM5 1336 aa12.3□□□□□ -0.44
SYNE2-213ENST00000554805 WDR7Q9Y4E6 1490 aa12.29□□□□□ -0.44
SYNE2-213ENST00000554805 NFKBIBQ15653 356 aa12.29□□□□□ -0.44
SYNE2-213ENST00000554805 MORC1Q86VD1 984 aa12.29□□□□□ -0.44
SYNE2-213ENST00000554805 SCAF11Q99590 1463 aaKnown RBP12.29□□□□□ -0.44
SYNE2-213ENST00000554805 COG6Q9Y2V7 657 aa12.29□□□□□ -0.44
SYNE2-213ENST00000554805 PLCH2O75038 1416 aa12.28□□□□□ -0.44
SYNE2-213ENST00000554805 STAC3Q96MF2 364 aa12.28□□□□□ -0.44
SYNE2-213ENST00000554805 CENPJQ9HC77 1338 aaPredicted RBP12.28□□□□□ -0.44
SYNE2-213ENST00000554805 UNC13BO14795 1591 aa12.28□□□□□ -0.44
SYNE2-213ENST00000554805 PANK1Q8TE04 598 aa12.28□□□□□ -0.44
SYNE2-213ENST00000554805 TRAK1Q9UPV9 953 aa12.28□□□□□ -0.44
SYNE2-213ENST00000554805 GGT6Q6P531 493 aa12.27□□□□□ -0.45
SYNE2-213ENST00000554805 ADGRF5Q8IZF2 1346 aa12.27□□□□□ -0.45
SYNE2-213ENST00000554805 ZNF521Q96K83 1311 aa12.27□□□□□ -0.45
SYNE2-213ENST00000554805 C8orf34Q49A92 452 aa12.26□□□□□ -0.45
SYNE2-213ENST00000554805 DMRT2Q9Y5R5 561 aa12.26□□□□□ -0.45
SYNE2-213ENST00000554805 ASXL1Q8IXJ9 1541 aa12.26□□□□□ -0.45
SYNE2-213ENST00000554805 MAST1Q9Y2H9 1570 aa12.26□□□□□ -0.45
SYNE2-213ENST00000554805 IQGAP3Q86VI3 1631 aa12.26□□□□□ -0.45
SYNE2-213ENST00000554805 BCL2L13Q9BXK5 485 aa12.25□□□□□ -0.45
SYNE2-213ENST00000554805 CARD14Q9BXL6 1004 aa12.25□□□□□ -0.45
SYNE2-213ENST00000554805 ATP10AO60312 1499 aa12.25□□□□□ -0.45
SYNE2-213ENST00000554805 GSE1Q14687 1217 aa12.25□□□□□ -0.45
SYNE2-213ENST00000554805 IGHDP01880 384 aa12.24□□□□□ -0.45
SYNE2-213ENST00000554805 ABCC2Q92887 1545 aa12.24□□□□□ -0.45
SYNE2-213ENST00000554805 PIK3C2GO75747 1445 aa12.24□□□□□ -0.45
SYNE2-213ENST00000554805 CGNL1Q0VF96 1302 aa12.23□□□□□ -0.45
SYNE2-213ENST00000554805 RAPGEF3O95398 923 aa12.23□□□□□ -0.45
SYNE2-213ENST00000554805 CLUAP1Q96AJ1 413 aa12.23□□□□□ -0.45
SYNE2-213ENST00000554805 NKTRP30414 1462 aaKnown RBP12.23□□□□□ -0.45
SYNE2-213ENST00000554805 MLECQ14165 292 aa12.23□□□□□ -0.45
SYNE2-213ENST00000554805 SLC12A5Q9H2X9 1139 aa12.23□□□□□ -0.45
SYNE2-213ENST00000554805 SCAPERQ9BY12 1400 aa12.23□□□□□ -0.45
SYNE2-213ENST00000554805 PLXNC1O60486 1568 aa12.22□□□□□ -0.45
SYNE2-213ENST00000554805 WWC1Q8IX03 1113 aa12.22□□□□□ -0.45
SYNE2-213ENST00000554805 NUTM2DQ5VT03 806 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-213ENST00000554805 TMEM132EQ6IEE7 984 aa12.22□□□□□ -0.45
SYNE2-213ENST00000554805 MYO5CQ9NQX4 1742 aa12.22□□□□□ -0.45
SYNE2-213ENST00000554805 FRAT2O75474 233 aaPredicted RBP12.21□□□□□ -0.45
SYNE2-213ENST00000554805 CFAP53Q96M91 514 aa12.21□□□□□ -0.45
SYNE2-213ENST00000554805 TRMT2AQ8IZ69 625 aaKnown RBP12.21□□□□□ -0.45
SYNE2-213ENST00000554805 TCP11L2Q8N4U5 519 aa12.21□□□□□ -0.46
SYNE2-213ENST00000554805 SAFB2Q14151 953 aaKnown RBP eCLIP12.2□□□□□ -0.46
SYNE2-213ENST00000554805 PDE3AQ14432 1141 aa12.2□□□□□ -0.46
SYNE2-213ENST00000554805 UPF2Q9HAU5 1272 aaKnown RBP12.2□□□□□ -0.46
SYNE2-213ENST00000554805 BRPF3Q9ULD4 1205 aa12.2□□□□□ -0.46
SYNE2-213ENST00000554805 SLKQ9H2G2 1235 aaPredicted RBP12.2□□□□□ -0.46
SYNE2-213ENST00000554805 FAM69CQ0P6D2 419 aa12.2□□□□□ -0.46
SYNE2-213ENST00000554805 BECN1Q14457 450 aa12.2□□□□□ -0.46
SYNE2-213ENST00000554805 NGEFQ8N5V2 710 aa12.2□□□□□ -0.46
SYNE2-213ENST00000554805 RUNDC1Q96C34 613 aa12.2□□□□□ -0.46
SYNE2-213ENST00000554805 U2AF1L5P0DN76 240 aaPredicted RBP12.19□□□□□ -0.46
SYNE2-213ENST00000554805 U2AF1Q01081 240 aaKnown RBP eCLIP12.19□□□□□ -0.46
SYNE2-213ENST00000554805 NPC1L1Q9UHC9 1359 aa12.19□□□□□ -0.46
SYNE2-213ENST00000554805 MTHFSP49914 203 aa12.19□□□□□ -0.46
SYNE2-213ENST00000554805 MAPK8IP3Q9UPT6 1336 aa12.18□□□□□ -0.46
SYNE2-213ENST00000554805 MADDQ8WXG6 1647 aa12.17□□□□□ -0.46
SYNE2-213ENST00000554805 NSD3Q9BZ95 1437 aa12.17□□□□□ -0.46
SYNE2-213ENST00000554805 U2SURPO15042 1029 aaKnown RBP12.17□□□□□ -0.46
SYNE2-213ENST00000554805 TNNQ9UQP3 1299 aa12.17□□□□□ -0.46
SYNE2-213ENST00000554805 FTSJ3Q8IY81 847 aaKnown RBP12.17□□□□□ -0.46
SYNE2-213ENST00000554805 PMFBP1Q8TBY8 1022 aa12.17□□□□□ -0.46
SYNE2-213ENST00000554805 SYNMO15061 1565 aa12.17□□□□□ -0.46
SYNE2-213ENST00000554805 PTPRTO14522 1441 aa12.16□□□□□ -0.46
SYNE2-213ENST00000554805 TRHP20396 242 aaPredicted RBP12.16□□□□□ -0.46
SYNE2-213ENST00000554805 TRPM2O94759 1503 aa12.16□□□□□ -0.46
SYNE2-213ENST00000554805 ABCC1P33527 1531 aa12.16□□□□□ -0.46
SYNE2-213ENST00000554805 RARSP54136 660 aaKnown RBP12.16□□□□□ -0.46
SYNE2-213ENST00000554805 SEC24BO95487 1268 aa12.16□□□□□ -0.46
SYNE2-213ENST00000554805 RTEL1-TNFRSF6BF6WH68 1400 aa12.15□□□□□ -0.46
SYNE2-213ENST00000554805 SPRYD3Q8NCJ5 442 aa12.15□□□□□ -0.46
SYNE2-213ENST00000554805 ARXQ96QS3 562 aa12.15□□□□□ -0.46
SYNE2-213ENST00000554805 RWDD1Q9H446 243 aaPredicted RBP12.14□□□□□ -0.47
SYNE2-213ENST00000554805 STK26Q9P289 416 aa12.14□□□□□ -0.47
SYNE2-213ENST00000554805 ERVK-7P63135 1459 aa12.14□□□□□ -0.47
SYNE2-213ENST00000554805 CLTCL1P53675 1640 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms