RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 TESK2Q96S53 571 aa17.64■□□□□ 0.41
VIPAS39-206ENST00000553888 SENP3Q9H4L4 574 aaPredicted RBP17.64■□□□□ 0.41
VIPAS39-206ENST00000553888 IQGAP1P46940 1657 aa17.64■□□□□ 0.41
VIPAS39-206ENST00000553888 DISP3Q9P2K9 1392 aa17.64■□□□□ 0.41
VIPAS39-206ENST00000553888 MYO5BQ9ULV0 1848 aa17.63■□□□□ 0.41
VIPAS39-206ENST00000553888 PRKRIP1Q9H875 184 aaPredicted RBP17.63■□□□□ 0.41
VIPAS39-206ENST00000553888 FBXO31Q5XUX0 539 aaPredicted RBP17.62■□□□□ 0.41
VIPAS39-206ENST00000553888 NEURL4Q96JN8 1562 aa17.62■□□□□ 0.41
VIPAS39-206ENST00000553888 PPLO60437 1756 aa17.62■□□□□ 0.41
VIPAS39-206ENST00000553888 PREX1Q8TCU6 1659 aa17.61■□□□□ 0.41
VIPAS39-206ENST00000553888 PIK3C2BO00750 1634 aa17.61■□□□□ 0.41
VIPAS39-206ENST00000553888 CLTCQ00610 1675 aaKnown RBP17.61■□□□□ 0.41
VIPAS39-206ENST00000553888 MYOM2P54296 1465 aa17.6■□□□□ 0.41
VIPAS39-206ENST00000553888 IDI1Q13907 227 aa17.59■□□□□ 0.41
VIPAS39-206ENST00000553888 ARHGEF40Q8TER5 1519 aa17.59■□□□□ 0.41
VIPAS39-206ENST00000553888 ARID4BQ4LE39 1312 aaPredicted RBP17.58■□□□□ 0.41
VIPAS39-206ENST00000553888 ARHGAP31Q2M1Z3 1444 aa17.58■□□□□ 0.4
VIPAS39-206ENST00000553888 KIAA1210Q9ULL0 1709 aa17.58■□□□□ 0.4
VIPAS39-206ENST00000553888 REREQ9P2R6 1566 aa17.57■□□□□ 0.4
VIPAS39-206ENST00000553888 SCAF11Q99590 1463 aaKnown RBP17.55■□□□□ 0.4
VIPAS39-206ENST00000553888 AGLP35573 1532 aa17.55■□□□□ 0.4
VIPAS39-206ENST00000553888 NRXN1Q9ULB1 1477 aa17.55■□□□□ 0.4
VIPAS39-206ENST00000553888 STAC3Q96MF2 364 aa17.54■□□□□ 0.4
VIPAS39-206ENST00000553888 NEXMIFQ5QGS0 1516 aa17.53■□□□□ 0.4
VIPAS39-206ENST00000553888 TMEM132EQ6IEE7 984 aa17.52■□□□□ 0.4
VIPAS39-206ENST00000553888 TRHP20396 242 aaPredicted RBP17.52■□□□□ 0.4
VIPAS39-206ENST00000553888 PIK3C2GO75747 1445 aa17.52■□□□□ 0.39
VIPAS39-206ENST00000553888 TMF1P82094 1093 aa17.51■□□□□ 0.39
VIPAS39-206ENST00000553888 BCL11AQ9H165 835 aa17.51■□□□□ 0.39
VIPAS39-206ENST00000553888 MRS2Q9HD23 443 aa17.51■□□□□ 0.39
VIPAS39-206ENST00000553888 ERVK-7P63135 1459 aa17.51■□□□□ 0.39
VIPAS39-206ENST00000553888 TMEM131LA2VDJ0 1609 aa17.5■□□□□ 0.39
VIPAS39-206ENST00000553888 FAM9BQ8IZU0 186 aa17.5■□□□□ 0.39
VIPAS39-206ENST00000553888 TRAK1Q9UPV9 953 aa17.48■□□□□ 0.39
VIPAS39-206ENST00000553888 SLC52A1Q9NWF4 448 aa17.48■□□□□ 0.39
VIPAS39-206ENST00000553888 PANK3Q9H999 370 aa17.47■□□□□ 0.39
VIPAS39-206ENST00000553888 C14orf93Q9H972 538 aaKnown RBP17.47■□□□□ 0.39
VIPAS39-206ENST00000553888 RPGRIP1LQ68CZ1 1315 aa17.46■□□□□ 0.39
VIPAS39-206ENST00000553888 ADGRB1O14514 1584 aa17.46■□□□□ 0.39
VIPAS39-206ENST00000553888 HNRNPUQ00839 825 aaKnown RBP eCLIP17.46■□□□□ 0.39
VIPAS39-206ENST00000553888 EIF3AQ14152 1382 aaKnown RBP17.45■□□□□ 0.38
VIPAS39-206ENST00000553888 PER1O15534 1290 aaPredicted RBP17.44■□□□□ 0.38
VIPAS39-206ENST00000553888 SETBP1Q9Y6X0 1596 aa17.44■□□□□ 0.38
VIPAS39-206ENST00000553888 MYOM1P52179 1685 aa17.44■□□□□ 0.38
VIPAS39-206ENST00000553888 VGFO15240 615 aaPredicted RBP17.43■□□□□ 0.38
VIPAS39-206ENST00000553888 CC2D1BQ5T0F9 858 aaKnown RBP17.43■□□□□ 0.38
VIPAS39-206ENST00000553888 STAG3Q9UJ98 1225 aa17.43■□□□□ 0.38
VIPAS39-206ENST00000553888 SENP3-EIF4A1A0A087X0R7 540 aa17.42■□□□□ 0.38
VIPAS39-206ENST00000553888 SPATA31D1Q6ZQQ2 1576 aa17.42■□□□□ 0.38
VIPAS39-206ENST00000553888 PPP6R1Q9UPN7 881 aa17.41■□□□□ 0.38
VIPAS39-206ENST00000553888 QRICH2Q9H0J4 1663 aa17.41■□□□□ 0.38
VIPAS39-206ENST00000553888 ZMYM3Q14202 1370 aa17.41■□□□□ 0.38
VIPAS39-206ENST00000553888 ESF1Q9H501 851 aaKnown RBP17.41■□□□□ 0.38
VIPAS39-206ENST00000553888 KDM5AP29375 1690 aaKnown RBP17.41■□□□□ 0.38
VIPAS39-206ENST00000553888 MYO3AQ8NEV4 1616 aa17.41■□□□□ 0.38
VIPAS39-206ENST00000553888 PLPPR3Q6T4P5 718 aa17.39■□□□□ 0.37
VIPAS39-206ENST00000553888 ASXL1Q8IXJ9 1541 aa17.39■□□□□ 0.37
VIPAS39-206ENST00000553888 STK26Q9P289 416 aa17.39■□□□□ 0.37
VIPAS39-206ENST00000553888 CENPJQ9HC77 1338 aaPredicted RBP17.39■□□□□ 0.37
VIPAS39-206ENST00000553888 ARHGEF28Q8N1W1 1705 aaKnown RBP17.38■□□□□ 0.37
VIPAS39-206ENST00000553888 SAFB2Q14151 953 aaKnown RBP eCLIP17.38■□□□□ 0.37
VIPAS39-206ENST00000553888 A2ML1A8K2U0 1454 aa17.37■□□□□ 0.37
VIPAS39-206ENST00000553888 KTN1Q86UP2 1357 aaKnown RBP17.36■□□□□ 0.37
VIPAS39-206ENST00000553888 CEBPAP49715 358 aaPredicted RBP17.36■□□□□ 0.37
VIPAS39-206ENST00000553888 MYBBP1AQ9BQG0 1328 aaKnown RBP17.35■□□□□ 0.37
VIPAS39-206ENST00000553888 PARD3Q8TEW0 1356 aa17.35■□□□□ 0.37
VIPAS39-206ENST00000553888 TMC1Q8TDI8 760 aa17.34■□□□□ 0.37
VIPAS39-206ENST00000553888 ZFYVE9O95405 1425 aa17.34■□□□□ 0.37
VIPAS39-206ENST00000553888 RALBP1Q15311 655 aa17.34■□□□□ 0.37
VIPAS39-206ENST00000553888 CDCA8Q53HL2 280 aa17.33■□□□□ 0.37
VIPAS39-206ENST00000553888 RIMS2Q9UQ26 1411 aa17.32■□□□□ 0.36
VIPAS39-206ENST00000553888 ALKQ9UM73 1620 aa17.32■□□□□ 0.36
VIPAS39-206ENST00000553888 PNISRQ8TF01 805 aaKnown RBP17.31■□□□□ 0.36
VIPAS39-206ENST00000553888 KNSTRNQ9Y448 316 aa17.3■□□□□ 0.36
VIPAS39-206ENST00000553888 TNRQ92752 1358 aa17.3■□□□□ 0.36
VIPAS39-206ENST00000553888 SBNO2Q9Y2G9 1366 aa17.3■□□□□ 0.36
VIPAS39-206ENST00000553888 AMER1Q5JTC6 1135 aaPredicted RBP17.29■□□□□ 0.36
VIPAS39-206ENST00000553888 CARD14Q9BXL6 1004 aa17.28■□□□□ 0.36
VIPAS39-206ENST00000553888 TULP4Q9NRJ4 1543 aa17.28■□□□□ 0.36
VIPAS39-206ENST00000553888 PTPRMP28827 1452 aa17.28■□□□□ 0.36
VIPAS39-206ENST00000553888 BRD4O60885 1362 aaPredicted RBP17.28■□□□□ 0.36
VIPAS39-206ENST00000553888 FER1L4A9Z1Z3 1794 aa17.28■□□□□ 0.36
VIPAS39-206ENST00000553888 SLC12A5Q9H2X9 1139 aa17.27■□□□□ 0.36
VIPAS39-206ENST00000553888 C3P01024 1663 aa17.27■□□□□ 0.36
VIPAS39-206ENST00000553888 YTHDC2Q9H6S0 1430 aaKnown RBP17.27■□□□□ 0.36
VIPAS39-206ENST00000553888 SETD1AO15047 1707 aaKnown RBP17.27■□□□□ 0.36
VIPAS39-206ENST00000553888 NLRP13Q86W25 1043 aa17.27■□□□□ 0.35
VIPAS39-206ENST00000553888 UBR1Q8IWV7 1749 aa17.27■□□□□ 0.35
VIPAS39-206ENST00000553888 NRXN3Q9Y4C0 1643 aa17.26■□□□□ 0.35
VIPAS39-206ENST00000553888 PRAM1Q96QH2 718 aa17.26■□□□□ 0.35
VIPAS39-206ENST00000553888 CABP2Q9NPB3 220 aa17.26■□□□□ 0.35
VIPAS39-206ENST00000553888 MINK1Q8N4C8 1332 aaPredicted RBP17.25■□□□□ 0.35
VIPAS39-206ENST00000553888 DNAJC5Q9H3Z4 198 aa17.24■□□□□ 0.35
VIPAS39-206ENST00000553888 EIF5BO60841 1220 aaKnown RBP17.23■□□□□ 0.35
VIPAS39-206ENST00000553888 SUPT16HQ9Y5B9 1047 aaKnown RBP17.23■□□□□ 0.35
VIPAS39-206ENST00000553888 LRPPRCP42704 1394 aaKnown RBP17.22■□□□□ 0.35
VIPAS39-206ENST00000553888 ZBED9Q6R2W3 1325 aa17.22■□□□□ 0.35
VIPAS39-206ENST00000553888 WAPLQ7Z5K2 1190 aa17.22■□□□□ 0.35
VIPAS39-206ENST00000553888 POGKQ9P215 609 aa17.21■□□□□ 0.35
VIPAS39-206ENST00000553888 EVC2Q86UK5 1308 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms