RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 PRKD2Q9BZL6 878 aa7.44□□□□□ -1.22
LIMA1-208ENST00000551691 RBM27Q9P2N5 1060 aaKnown RBP7.44□□□□□ -1.22
LIMA1-208ENST00000551691 EYA1Q99502 592 aa7.42□□□□□ -1.22
LIMA1-208ENST00000551691 NUTM2FA1L443 756 aa7.41□□□□□ -1.22
LIMA1-208ENST00000551691 ARHGEF1Q92888 912 aaKnown RBP7.41□□□□□ -1.22
LIMA1-208ENST00000551691 GFRA3O60609 400 aa7.4□□□□□ -1.22
LIMA1-208ENST00000551691 SLF2Q8IX21 1173 aa7.4□□□□□ -1.22
LIMA1-208ENST00000551691 LCE2BO14633 110 aa7.39□□□□□ -1.23
LIMA1-208ENST00000551691 PTGDRQ13258 359 aa7.39□□□□□ -1.23
LIMA1-208ENST00000551691 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.39□□□□□ -1.23
LIMA1-208ENST00000551691 SEMA3EO15041 775 aa7.38□□□□□ -1.23
LIMA1-208ENST00000551691 SCRIBQ14160 1630 aa7.38□□□□□ -1.23
LIMA1-208ENST00000551691 TLL1O43897 1013 aa7.37□□□□□ -1.23
LIMA1-208ENST00000551691 BLOC1S3Q6QNY0 202 aa7.37□□□□□ -1.23
LIMA1-208ENST00000551691 PCDHB3Q9Y5E6 796 aa7.36□□□□□ -1.23
LIMA1-208ENST00000551691 ADGRG1Q9Y653 693 aa7.36□□□□□ -1.23
LIMA1-208ENST00000551691 SHROOM4Q9ULL8 1493 aa7.36□□□□□ -1.23
LIMA1-208ENST00000551691 RCCD1A6NED2 376 aa7.35□□□□□ -1.23
LIMA1-208ENST00000551691 ZPR1O75312 459 aa7.35□□□□□ -1.23
LIMA1-208ENST00000551691 DNAJB2P25686 324 aa7.35□□□□□ -1.23
LIMA1-208ENST00000551691 SLC4A3P48751 1232 aa7.34□□□□□ -1.23
LIMA1-208ENST00000551691 RBM46Q8TBY0 533 aaKnown RBP7.34□□□□□ -1.23
LIMA1-208ENST00000551691 MYO15BQ96JP2 1530 aa7.33□□□□□ -1.24
LIMA1-208ENST00000551691 TMEM134Q9H6X4 195 aa7.33□□□□□ -1.24
LIMA1-208ENST00000551691 NESP48681 1621 aa7.33□□□□□ -1.24
LIMA1-208ENST00000551691 PPEF1O14829 653 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-208ENST00000551691 CFHP08603 1231 aa7.32□□□□□ -1.24
LIMA1-208ENST00000551691 RBM26Q5T8P6 1007 aaKnown RBP7.32□□□□□ -1.24
LIMA1-208ENST00000551691 TRAF7Q6Q0C0 670 aa7.32□□□□□ -1.24
LIMA1-208ENST00000551691 FCHSD2O94868 740 aa7.31□□□□□ -1.24
LIMA1-208ENST00000551691 NECTIN2Q92692 538 aa7.31□□□□□ -1.24
LIMA1-208ENST00000551691 RNF223E7ERA6 249 aa7.3□□□□□ -1.24
LIMA1-208ENST00000551691 SLC10A3P09131 477 aa7.3□□□□□ -1.24
LIMA1-208ENST00000551691 GGCXP38435 758 aa7.3□□□□□ -1.24
LIMA1-208ENST00000551691 NLRP7Q8WX94 980 aa7.3□□□□□ -1.24
LIMA1-208ENST00000551691 PDZRN3Q9UPQ7 1066 aa7.3□□□□□ -1.24
LIMA1-208ENST00000551691 V9GY48 417 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-208ENST00000551691 NRG2O14511 850 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-208ENST00000551691 S1PR4O95977 384 aa7.29□□□□□ -1.24
LIMA1-208ENST00000551691 FECHP22830 423 aa7.29□□□□□ -1.24
LIMA1-208ENST00000551691 LAPTM4AQ15012 233 aa7.29□□□□□ -1.24
LIMA1-208ENST00000551691 P3H3Q8IVL6 736 aa7.29□□□□□ -1.24
LIMA1-208ENST00000551691 EMID1Q96A84 441 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-208ENST00000551691 PUS10Q3MIT2 529 aaKnown RBP7.28□□□□□ -1.24
LIMA1-208ENST00000551691 KMT5BQ4FZB7 885 aa7.28□□□□□ -1.24
LIMA1-208ENST00000551691 ACTN4O43707 911 aaKnown RBP7.27□□□□□ -1.25
LIMA1-208ENST00000551691 PRR14Q9BWN1 585 aa7.27□□□□□ -1.25
LIMA1-208ENST00000551691 PXYLP1Q8TE99 480 aa7.26□□□□□ -1.25
LIMA1-208ENST00000551691 SLC19A1P41440 591 aa7.25□□□□□ -1.25
LIMA1-208ENST00000551691 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.24□□□□□ -1.25
LIMA1-208ENST00000551691 TRIM67Q6ZTA4 783 aa7.24□□□□□ -1.25
LIMA1-208ENST00000551691 METTL3Q86U44 580 aaKnown RBP7.24□□□□□ -1.25
LIMA1-208ENST00000551691 TMUB1Q9BVT8 246 aa7.24□□□□□ -1.25
LIMA1-208ENST00000551691 TESPA1A2RU30 521 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-208ENST00000551691 PLA2G2CQ5R387 149 aa7.23□□□□□ -1.25
LIMA1-208ENST00000551691 LIAT1Q6ZQX7 453 aa7.23□□□□□ -1.25
LIMA1-208ENST00000551691 TNFRSF10AO00220 468 aa7.22□□□□□ -1.25
LIMA1-208ENST00000551691 ADH1BP00325 375 aa7.22□□□□□ -1.25
LIMA1-208ENST00000551691 HIC1Q14526 733 aa7.22□□□□□ -1.25
LIMA1-208ENST00000551691 RDH13Q8NBN7 331 aa7.22□□□□□ -1.25
LIMA1-208ENST00000551691 DDX11L8A8MPP1 907 aa7.21□□□□□ -1.26
LIMA1-208ENST00000551691 GNPATO15228 680 aa7.21□□□□□ -1.26
LIMA1-208ENST00000551691 GPR37O15354 613 aa7.21□□□□□ -1.26
LIMA1-208ENST00000551691 OATP04181 439 aa7.21□□□□□ -1.26
LIMA1-208ENST00000551691 SPRYD7Q5W111 196 aa7.21□□□□□ -1.26
LIMA1-208ENST00000551691 CYB5RLQ6IPT4 315 aa7.21□□□□□ -1.26
LIMA1-208ENST00000551691 SCUBE3Q8IX30 993 aa7.21□□□□□ -1.26
LIMA1-208ENST00000551691 THOC2Q8NI27 1593 aaKnown RBP7.2□□□□□ -1.26
LIMA1-208ENST00000551691 NR1I2O75469 434 aa7.2□□□□□ -1.26
LIMA1-208ENST00000551691 ZNF697Q5TEC3 545 aa7.2□□□□□ -1.26
LIMA1-208ENST00000551691 ERICH6Q7L0X2 663 aa7.2□□□□□ -1.26
LIMA1-208ENST00000551691 ANKLE1Q8NAG6 615 aa7.2□□□□□ -1.26
LIMA1-208ENST00000551691 SLC6A16Q9GZN6 736 aa7.2□□□□□ -1.26
LIMA1-208ENST00000551691 ZNF787Q6DD87 383 aa7.19□□□□□ -1.26
LIMA1-208ENST00000551691 PHOX2BQ99453 314 aa7.19□□□□□ -1.26
LIMA1-208ENST00000551691 SMARCA2P51531 1590 aa7.18□□□□□ -1.26
LIMA1-208ENST00000551691 FUT2Q10981 343 aa7.18□□□□□ -1.26
LIMA1-208ENST00000551691 ZNF598Q86UK7 904 aaKnown RBP7.17□□□□□ -1.26
LIMA1-208ENST00000551691 SPSB2Q99619 263 aa7.17□□□□□ -1.26
LIMA1-208ENST00000551691 FAM187AA6NFU0 413 aa7.16□□□□□ -1.26
LIMA1-208ENST00000551691 TULP1O00294 542 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-208ENST00000551691 FOXC1Q12948 553 aa7.16□□□□□ -1.26
LIMA1-208ENST00000551691 PKDCCQ504Y2 493 aa7.16□□□□□ -1.26
LIMA1-208ENST00000551691 SMYD5Q6GMV2 418 aa7.16□□□□□ -1.26
LIMA1-208ENST00000551691 PRDM9Q9NQV7 894 aa7.16□□□□□ -1.26
LIMA1-208ENST00000551691 DAXXQ9UER7 740 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-208ENST00000551691 NCAPD3P42695 1498 aa7.16□□□□□ -1.26
LIMA1-208ENST00000551691 POTECB2RU33 542 aa7.15□□□□□ -1.26
LIMA1-208ENST00000551691 MORN1Q5T089 497 aa7.15□□□□□ -1.26
LIMA1-208ENST00000551691 RIMBP3CA6NJZ7 1639 aa7.15□□□□□ -1.27
LIMA1-208ENST00000551691 RIMBP3BA6NNM3 1639 aa7.15□□□□□ -1.27
LIMA1-208ENST00000551691 RIMBP3Q9UFD9 1639 aa7.15□□□□□ -1.27
LIMA1-208ENST00000551691 GDF9O60383 454 aa7.14□□□□□ -1.27
LIMA1-208ENST00000551691 MYT1Q01538 1121 aa7.14□□□□□ -1.27
LIMA1-208ENST00000551691 RSPH4AQ5TD94 716 aa7.14□□□□□ -1.27
LIMA1-208ENST00000551691 GPIHBP1Q8IV16 184 aa7.14□□□□□ -1.27
LIMA1-208ENST00000551691 SLC27A5Q9Y2P5 690 aa7.14□□□□□ -1.27
LIMA1-208ENST00000551691 GTF3C3Q9Y5Q9 886 aa7.14□□□□□ -1.27
LIMA1-208ENST00000551691 ST8SIA5O15466 376 aa7.13□□□□□ -1.27
LIMA1-208ENST00000551691 FCF1Q9Y324 198 aaKnown RBP7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms