RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	PRIM1	P49642	420 aa	Known RBP	6.28	□□□□□ -1.4
PTCH1-223	ENST00000551623	LIAT1	Q6ZQX7	453 aa		6.28	□□□□□ -1.4
PTCH1-223	ENST00000551623	SPDYE16	A6NNV3	312 aa	Predicted RBP	6.27	□□□□□ -1.41
PTCH1-223	ENST00000551623	WFS1	O76024	890 aa		6.27	□□□□□ -1.41
PTCH1-223	ENST00000551623	PRR14	Q9BWN1	585 aa		6.27	□□□□□ -1.41
PTCH1-223	ENST00000551623	CDHR5	Q9HBB8	845 aa		6.27	□□□□□ -1.41
PTCH1-223	ENST00000551623	PPEF1	O14829	653 aa	Predicted RBP	6.26	□□□□□ -1.41
PTCH1-223	ENST00000551623	TLL1	O43897	1013 aa		6.26	□□□□□ -1.41
PTCH1-223	ENST00000551623	SLC4A3	P48751	1232 aa		6.26	□□□□□ -1.41
PTCH1-223	ENST00000551623	BLOC1S3	Q6QNY0	202 aa		6.26	□□□□□ -1.41
PTCH1-223	ENST00000551623	WIPF1	O43516	503 aa		6.24	□□□□□ -1.41
PTCH1-223	ENST00000551623	S1PR4	O95977	384 aa		6.24	□□□□□ -1.41
PTCH1-223	ENST00000551623	GRXCR2	A6NFK2	248 aa		6.23	□□□□□ -1.41
PTCH1-223	ENST00000551623	INSM1	Q01101	510 aa	Predicted RBP	6.23	□□□□□ -1.41
PTCH1-223	ENST00000551623	CRIPAK	Q8N1N5	446 aa		6.23	□□□□□ -1.41
PTCH1-223	ENST00000551623	TTC13	Q8NBP0	860 aa		6.23	□□□□□ -1.41
PTCH1-223	ENST00000551623	NFX1	Q12986	1120 aa	Known RBP	6.22	□□□□□ -1.41
PTCH1-223	ENST00000551623	PADI6	Q6TGC4	694 aa		6.22	□□□□□ -1.41
PTCH1-223	ENST00000551623	GMPR2	Q9P2T1	348 aa	Known RBP	6.21	□□□□□ -1.42
PTCH1-223	ENST00000551623	DACH1	Q9UI36	760 aa		6.21	□□□□□ -1.42
PTCH1-223	ENST00000551623	C11orf95	C9JLR9	678 aa	Predicted RBP	6.2	□□□□□ -1.42
PTCH1-223	ENST00000551623	OSBP	P22059	807 aa		6.2	□□□□□ -1.42
PTCH1-223	ENST00000551623	LMOD2	Q6P5Q4	547 aa		6.2	□□□□□ -1.42
PTCH1-223	ENST00000551623	PKD2L1	Q9P0L9	805 aa		6.2	□□□□□ -1.42
PTCH1-223	ENST00000551623	LOC100996750	A0A140TA64	210 aa		6.19	□□□□□ -1.42
PTCH1-223	ENST00000551623	AVP	P01185	164 aa		6.19	□□□□□ -1.42
PTCH1-223	ENST00000551623	PLA2G2C	Q5R387	149 aa		6.19	□□□□□ -1.42
PTCH1-223	ENST00000551623	EYA1	Q99502	592 aa		6.19	□□□□□ -1.42
PTCH1-223	ENST00000551623	KRTAP4-6	Q9BYQ5	205 aa		6.19	□□□□□ -1.42
PTCH1-223	ENST00000551623	AXIN1	O15169	862 aa		6.18	□□□□□ -1.42
PTCH1-223	ENST00000551623	ADH1B	P00325	375 aa		6.18	□□□□□ -1.42
PTCH1-223	ENST00000551623	FOXC1	Q12948	553 aa		6.18	□□□□□ -1.42
PTCH1-223	ENST00000551623	NPDC1	Q9NQX5	325 aa	Predicted RBP	6.18	□□□□□ -1.42
PTCH1-223	ENST00000551623	ACTN4	O43707	911 aa	Known RBP	6.17	□□□□□ -1.42
PTCH1-223	ENST00000551623	SLC6A16	Q9GZN6	736 aa		6.17	□□□□□ -1.42
PTCH1-223	ENST00000551623	NISCH	Q9Y2I1	1504 aa		6.16	□□□□□ -1.42
PTCH1-223	ENST00000551623	CTC1	Q2NKJ3	1217 aa		6.16	□□□□□ -1.42
PTCH1-223	ENST00000551623	KMT5B	Q4FZB7	885 aa		6.16	□□□□□ -1.42
PTCH1-223	ENST00000551623	SMCP	P49901	116 aa	Predicted RBP	6.15	□□□□□ -1.42
PTCH1-223	ENST00000551623	LCE2C	Q5TA81	110 aa		6.15	□□□□□ -1.42
PTCH1-223	ENST00000551623	TOR4A	Q9NXH8	423 aa		6.15	□□□□□ -1.42
PTCH1-223	ENST00000551623	ARIH1	Q9Y4X5	557 aa	Predicted RBP	6.15	□□□□□ -1.42
PTCH1-223	ENST00000551623	DNAJB2	P25686	324 aa		6.14	□□□□□ -1.43
PTCH1-223	ENST00000551623	NR1I2	O75469	434 aa		6.13	□□□□□ -1.43
PTCH1-223	ENST00000551623	CFH	P08603	1231 aa		6.13	□□□□□ -1.43
PTCH1-223	ENST00000551623	DCAF8L2	P0C7V8	631 aa		6.13	□□□□□ -1.43
PTCH1-223	ENST00000551623	CYP4X1	Q8N118	509 aa		6.13	□□□□□ -1.43
PTCH1-223	ENST00000551623	TERT	O14746	1132 aa	Known RBP	6.12	□□□□□ -1.43
PTCH1-223	ENST00000551623	E2F4	Q16254	413 aa		6.12	□□□□□ -1.43
PTCH1-223	ENST00000551623	TMEM134	Q9H6X4	195 aa		6.12	□□□□□ -1.43
PTCH1-223	ENST00000551623	RPIA	P49247	311 aa		6.11	□□□□□ -1.43
PTCH1-223	ENST00000551623	FAM181B	A6NEQ2	426 aa		6.09	□□□□□ -1.43
PTCH1-223	ENST00000551623	SNRPB	P14678	240 aa	Known RBP	6.09	□□□□□ -1.43
PTCH1-223	ENST00000551623	ATP13A2	Q9NQ11	1180 aa		6.09	□□□□□ -1.43
PTCH1-223	ENST00000551623	CD2BP2	O95400	341 aa	Known RBP	6.08	□□□□□ -1.44
PTCH1-223	ENST00000551623	SLC10A3	P09131	477 aa		6.08	□□□□□ -1.44
PTCH1-223	ENST00000551623	SCUBE3	Q8IX30	993 aa		6.08	□□□□□ -1.44
PTCH1-223	ENST00000551623	RBM46	Q8TBY0	533 aa	Known RBP	6.08	□□□□□ -1.44
PTCH1-223	ENST00000551623	SPSB2	Q99619	263 aa		6.08	□□□□□ -1.44
PTCH1-223	ENST00000551623	TRIM47	Q96LD4	638 aa		6.07	□□□□□ -1.44
PTCH1-223	ENST00000551623	TTC24	A2A3L6	582 aa	Predicted RBP	6.06	□□□□□ -1.44
PTCH1-223	ENST00000551623	RCCD1	A6NED2	376 aa		6.06	□□□□□ -1.44
PTCH1-223	ENST00000551623	SENP2	Q9HC62	589 aa		6.06	□□□□□ -1.44
PTCH1-223	ENST00000551623	FCF1	Q9Y324	198 aa	Known RBP	6.06	□□□□□ -1.44
PTCH1-223	ENST00000551623	PUS10	Q3MIT2	529 aa	Known RBP	6.05	□□□□□ -1.44
PTCH1-223	ENST00000551623	ADGRG1	Q9Y653	693 aa		6.05	□□□□□ -1.44
PTCH1-223	ENST00000551623	SMPD1	P17405	629 aa		6.03	□□□□□ -1.44
PTCH1-223	ENST00000551623	KIFC2	Q96AC6	838 aa		6.03	□□□□□ -1.44
PTCH1-223	ENST00000551623	WDR70	Q9NW82	654 aa		6.03	□□□□□ -1.44
PTCH1-223	ENST00000551623	LOR	P23490	312 aa	Predicted RBP	6.02	□□□□□ -1.45
PTCH1-223	ENST00000551623	PTGDR	Q13258	359 aa		6.02	□□□□□ -1.45
PTCH1-223	ENST00000551623	ZSCAN1	Q8NBB4	408 aa		6.02	□□□□□ -1.45
PTCH1-223	ENST00000551623	SNIP1	Q8TAD8	396 aa	Known RBP	6.02	□□□□□ -1.45
PTCH1-223	ENST00000551623	SLC16A10	Q8TF71	515 aa		6.02	□□□□□ -1.45
PTCH1-223	ENST00000551623	SUZ12	Q15022	739 aa	Known RBP	6.01	□□□□□ -1.45
PTCH1-223	ENST00000551623	FAM161A	Q3B820	660 aa		6.01	□□□□□ -1.45
PTCH1-223	ENST00000551623	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	6	□□□□□ -1.45
PTCH1-223	ENST00000551623	WNT7A	O00755	349 aa		6	□□□□□ -1.45
PTCH1-223	ENST00000551623	ZBTB24	O43167	697 aa	Predicted RBP	6	□□□□□ -1.45
PTCH1-223	ENST00000551623	GMPR	P36959	345 aa		6	□□□□□ -1.45
PTCH1-223	ENST00000551623	THAP11	Q96EK4	314 aa		6	□□□□□ -1.45
PTCH1-223	ENST00000551623	NXF1	Q9UBU9	619 aa	Known RBP	5.99	□□□□□ -1.45
PTCH1-223	ENST00000551623		J3QL48	77 aa		5.98	□□□□□ -1.45
PTCH1-223	ENST00000551623	MORN1	Q5T089	497 aa		5.98	□□□□□ -1.45
PTCH1-223	ENST00000551623	RSPH4A	Q5TD94	716 aa		5.98	□□□□□ -1.45
PTCH1-223	ENST00000551623	FAM160A2	Q8N612	972 aa	Predicted RBP	5.98	□□□□□ -1.45
PTCH1-223	ENST00000551623	PRDM9	Q9NQV7	894 aa		5.98	□□□□□ -1.45
PTCH1-223	ENST00000551623	FMNL1	O95466	1100 aa	Predicted RBP	5.97	□□□□□ -1.45
PTCH1-223	ENST00000551623	HPS1	Q92902	700 aa		5.97	□□□□□ -1.45
PTCH1-223	ENST00000551623	IRF7	Q92985	503 aa		5.97	□□□□□ -1.45
PTCH1-223	ENST00000551623	MRGPRX2	Q96LB1	330 aa		5.97	□□□□□ -1.45
PTCH1-223	ENST00000551623	MLLT3	P42568	568 aa	Predicted RBP	5.96	□□□□□ -1.46
PTCH1-223	ENST00000551623	NPAS3	Q8IXF0	933 aa		5.96	□□□□□ -1.46
PTCH1-223	ENST00000551623	BBX	Q8WY36	941 aa	Predicted RBP	5.96	□□□□□ -1.46
PTCH1-223	ENST00000551623	TRIM32	Q13049	653 aa		5.95	□□□□□ -1.46
PTCH1-223	ENST00000551623	PXYLP1	Q8TE99	480 aa		5.95	□□□□□ -1.46
PTCH1-223	ENST00000551623	FUT2	Q10981	343 aa		5.94	□□□□□ -1.46
PTCH1-223	ENST00000551623	MSS51	Q4VC12	460 aa		5.94	□□□□□ -1.46
PTCH1-223	ENST00000551623	SLC27A5	Q9Y2P5	690 aa		5.94	□□□□□ -1.46
PTCH1-223	ENST00000551623	ATP6V1A	P38606	617 aa		5.93	□□□□□ -1.46

Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms