RNA–Protein interactions for RNA: ENST00000546849.1

NPAS3-204, Transcript of neuronal PAS domain protein 3, humanhuman

TSL 3

Gene NPAS3, Length 464 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-204ENST00000546849 RCCD1A6NED2 376 aa12.58□□□□□ -0.4
NPAS3-204ENST00000546849 DNAJB2P25686 324 aa12.58□□□□□ -0.4
NPAS3-204ENST00000546849 SSTR3P32745 418 aaPredicted RBP12.58□□□□□ -0.4
NPAS3-204ENST00000546849 KIAA1468Q9P260 1216 aa12.57□□□□□ -0.4
NPAS3-204ENST00000546849 REPIN1Q9BWE0 567 aaKnown RBP12.56□□□□□ -0.4
NPAS3-204ENST00000546849 ATP1B4Q9UN42 357 aaPredicted RBP12.56□□□□□ -0.4
NPAS3-204ENST00000546849 SMAPO00193 183 aa12.55□□□□□ -0.4
NPAS3-204ENST00000546849 MS4A1P11836 297 aa12.55□□□□□ -0.4
NPAS3-204ENST00000546849 PTPN5P54829 565 aa12.55□□□□□ -0.4
NPAS3-204ENST00000546849 EYA1Q99502 592 aa12.55□□□□□ -0.4
NPAS3-204ENST00000546849 SLC4A3P48751 1232 aa12.54□□□□□ -0.4
NPAS3-204ENST00000546849 SULF1Q8IWU6 871 aa12.54□□□□□ -0.4
NPAS3-204ENST00000546849 MRPL50Q8N5N7 158 aaKnown RBP12.54□□□□□ -0.4
NPAS3-204ENST00000546849 TMUB1Q9BVT8 246 aa12.54□□□□□ -0.4
NPAS3-204ENST00000546849 FAM217BQ9NTX9 383 aaPredicted RBP12.54□□□□□ -0.4
NPAS3-204ENST00000546849 HDGFP51858 240 aaKnown RBP12.53□□□□□ -0.4
NPAS3-204ENST00000546849 THSD4Q6ZMP0 1018 aa12.53□□□□□ -0.4
NPAS3-204ENST00000546849 RABGEF1Q9UJ41 708 aa12.53□□□□□ -0.4
NPAS3-204ENST00000546849 ERICH6Q7L0X2 663 aa12.52□□□□□ -0.41
NPAS3-204ENST00000546849 BEGAINQ9BUH8 593 aa12.52□□□□□ -0.41
NPAS3-204ENST00000546849 NBPF3Q9H094 633 aa12.52□□□□□ -0.41
NPAS3-204ENST00000546849 PLEKHG3A1L390 1219 aa12.51□□□□□ -0.41
NPAS3-204ENST00000546849 WNT2BQ93097 391 aa12.51□□□□□ -0.41
NPAS3-204ENST00000546849 RSPH6AQ9H0K4 717 aa12.5□□□□□ -0.41
NPAS3-204ENST00000546849 GOLGA8CPA6NN73 597 aa12.49□□□□□ -0.41
NPAS3-204ENST00000546849 DDX11L8A8MPP1 907 aa12.49□□□□□ -0.41
NPAS3-204ENST00000546849 RSPH4AQ5TD94 716 aa12.49□□□□□ -0.41
NPAS3-204ENST00000546849 PCMTD1Q96MG8 357 aaPredicted RBP12.49□□□□□ -0.41
NPAS3-204ENST00000546849 SEPT9Q9UHD8 586 aaPredicted RBP12.49□□□□□ -0.41
NPAS3-204ENST00000546849 RDH13Q8NBN7 331 aa12.48□□□□□ -0.41
NPAS3-204ENST00000546849 TMEM134Q9H6X4 195 aa12.48□□□□□ -0.41
NPAS3-204ENST00000546849 C3orf80F5H4A9 247 aa12.46□□□□□ -0.41
NPAS3-204ENST00000546849 DIXDC1Q155Q3 683 aa12.46□□□□□ -0.41
NPAS3-204ENST00000546849 FAM98CQ17RN3 349 aaKnown RBP12.45□□□□□ -0.42
NPAS3-204ENST00000546849 NUTM1Q86Y26 1132 aa12.44□□□□□ -0.42
NPAS3-204ENST00000546849 RNF40O75150 1001 aa12.43□□□□□ -0.42
NPAS3-204ENST00000546849 SH3D19Q5HYK7 790 aa12.43□□□□□ -0.42
NPAS3-204ENST00000546849 C14orf37Q86TY3 774 aa12.43□□□□□ -0.42
NPAS3-204ENST00000546849 GOPCQ9HD26 462 aa12.43□□□□□ -0.42
NPAS3-204ENST00000546849 SWT1Q5T5J6 900 aaKnown RBP12.41□□□□□ -0.42
NPAS3-204ENST00000546849 LAPTM4BQ86VI4 370 aa12.41□□□□□ -0.42
NPAS3-204ENST00000546849 CD46P15529 392 aa12.4□□□□□ -0.42
NPAS3-204ENST00000546849 IFFO2Q5TF58 517 aa12.39□□□□□ -0.43
NPAS3-204ENST00000546849 SLF2Q8IX21 1173 aa12.39□□□□□ -0.43
NPAS3-204ENST00000546849 TBC1D2Q9BYX2 928 aa12.39□□□□□ -0.43
NPAS3-204ENST00000546849 SKIV2LQ15477 1246 aaKnown RBP12.37□□□□□ -0.43
NPAS3-204ENST00000546849 ANKK1Q8NFD2 765 aa12.37□□□□□ -0.43
NPAS3-204ENST00000546849 POLR3EQ9NVU0 708 aa12.37□□□□□ -0.43
NPAS3-204ENST00000546849 ZFRQ96KR1 1074 aaKnown RBP12.36□□□□□ -0.43
NPAS3-204ENST00000546849 CLK2P49760 499 aaKnown RBP12.35□□□□□ -0.43
NPAS3-204ENST00000546849 SAMD7Q7Z3H4 446 aa12.35□□□□□ -0.43
NPAS3-204ENST00000546849 NECTIN2Q92692 538 aa12.35□□□□□ -0.43
NPAS3-204ENST00000546849 SOWAHBA6NEL2 793 aa12.34□□□□□ -0.43
NPAS3-204ENST00000546849 BCAMP50895 628 aa12.34□□□□□ -0.43
NPAS3-204ENST00000546849 MYSM1Q5VVJ2 828 aa12.34□□□□□ -0.43
NPAS3-204ENST00000546849 LRCH3Q96II8 777 aa12.34□□□□□ -0.43
NPAS3-204ENST00000546849 TIMELESSQ9UNS1 1208 aa12.33□□□□□ -0.44
NPAS3-204ENST00000546849 SPIRE2Q8WWL2 714 aa12.32□□□□□ -0.44
NPAS3-204ENST00000546849 KDM4AO75164 1064 aa12.31□□□□□ -0.44
NPAS3-204ENST00000546849 USP46P62068 366 aa12.3□□□□□ -0.44
NPAS3-204ENST00000546849 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.3□□□□□ -0.44
NPAS3-204ENST00000546849 GCGRP47871 477 aa12.29□□□□□ -0.44
NPAS3-204ENST00000546849 RIC3Q7Z5B4 369 aa12.29□□□□□ -0.44
NPAS3-204ENST00000546849 CFHP08603 1231 aa12.28□□□□□ -0.44
NPAS3-204ENST00000546849 KMT5BQ4FZB7 885 aa12.28□□□□□ -0.44
NPAS3-204ENST00000546849 GRIPAP1Q4V328 841 aa12.28□□□□□ -0.44
NPAS3-204ENST00000546849 CSPP1Q1MSJ5 1256 aa12.27□□□□□ -0.45
NPAS3-204ENST00000546849 WBP1LQ9NX94 342 aa12.27□□□□□ -0.45
NPAS3-204ENST00000546849 A0A0G2JS52 829 aa12.26□□□□□ -0.45
NPAS3-204ENST00000546849 ITGBL1O95965 494 aaPredicted RBP12.26□□□□□ -0.45
NPAS3-204ENST00000546849 SLC10A3P09131 477 aa12.26□□□□□ -0.45
NPAS3-204ENST00000546849 PROCA1Q8NCQ7 364 aaPredicted RBP12.26□□□□□ -0.45
NPAS3-204ENST00000546849 MOXD2PA6NHM9 499 aa12.25□□□□□ -0.45
NPAS3-204ENST00000546849 RSBN1LQ6PCB5 846 aaPredicted RBP12.25□□□□□ -0.45
NPAS3-204ENST00000546849 FLIIQ13045 1269 aa12.24□□□□□ -0.45
NPAS3-204ENST00000546849 PRR14Q9BWN1 585 aa12.24□□□□□ -0.45
NPAS3-204ENST00000546849 SPTLC1O15269 473 aa12.23□□□□□ -0.45
NPAS3-204ENST00000546849 RGS20O76081 388 aa12.23□□□□□ -0.45
NPAS3-204ENST00000546849 NDUFV2P19404 249 aa12.23□□□□□ -0.45
NPAS3-204ENST00000546849 NYAP1Q6ZVC0 841 aa12.23□□□□□ -0.45
NPAS3-204ENST00000546849 LIMD1Q9UGP4 676 aa12.23□□□□□ -0.45
NPAS3-204ENST00000546849 NUTM2BA6NNL0 878 aaPredicted RBP12.22□□□□□ -0.45
NPAS3-204ENST00000546849 NUTM2EB1AL46 878 aaPredicted RBP12.22□□□□□ -0.45
NPAS3-204ENST00000546849 HOXA2O43364 376 aa12.22□□□□□ -0.45
NPAS3-204ENST00000546849 NUTM2DQ5VT03 806 aaPredicted RBP12.22□□□□□ -0.45
NPAS3-204ENST00000546849 NUTM2AQ8IVF1 878 aaPredicted RBP12.22□□□□□ -0.45
NPAS3-204ENST00000546849 GJA5P36382 358 aa12.21□□□□□ -0.45
NPAS3-204ENST00000546849 PPP4CP60510 307 aa12.21□□□□□ -0.45
NPAS3-204ENST00000546849 FDX1P10109 184 aa12.2□□□□□ -0.46
NPAS3-204ENST00000546849 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.2□□□□□ -0.46
NPAS3-204ENST00000546849 TSR3Q9UJK0 312 aaKnown RBP12.2□□□□□ -0.46
NPAS3-204ENST00000546849 HPS5Q9UPZ3 1129 aa12.2□□□□□ -0.46
NPAS3-204ENST00000546849 FUT2Q10981 343 aa12.18□□□□□ -0.46
NPAS3-204ENST00000546849 TUSC1Q2TAM9 212 aa12.18□□□□□ -0.46
NPAS3-204ENST00000546849 ZBTB3Q9H5J0 574 aa12.18□□□□□ -0.46
NPAS3-204ENST00000546849 ATP6V1AP38606 617 aa12.17□□□□□ -0.46
NPAS3-204ENST00000546849 RFC5P40937 340 aa12.16□□□□□ -0.46
NPAS3-204ENST00000546849 C6orf229H3BNL8 230 aa12.14□□□□□ -0.47
NPAS3-204ENST00000546849 TMEM259Q4ZIN3 620 aa12.14□□□□□ -0.47
NPAS3-204ENST00000546849 PRPF38BQ5VTL8 546 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms