RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 PLEKHD1A6NEE1 506 aa9.11□□□□□ -0.95
SYNE1-239ENST00000545694 KIF14Q15058 1648 aa9.11□□□□□ -0.95
SYNE1-239ENST00000545694 HFM1A2PYH4 1435 aa9.11□□□□□ -0.95
SYNE1-239ENST00000545694 UHRF1BP1LA0JNW5 1464 aa9.1□□□□□ -0.95
SYNE1-239ENST00000545694 PTGER2P43116 358 aa9.1□□□□□ -0.95
SYNE1-239ENST00000545694 GPHNQ9NQX3 736 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-239ENST00000545694 DHX57Q6P158 1386 aaKnown RBP9.1□□□□□ -0.95
SYNE1-239ENST00000545694 ABCC2Q92887 1545 aa9.1□□□□□ -0.95
SYNE1-239ENST00000545694 ATP10BO94823 1461 aa9.09□□□□□ -0.95
SYNE1-239ENST00000545694 PBX2P40425 430 aa9.09□□□□□ -0.95
SYNE1-239ENST00000545694 FOXK1P85037 733 aa9.09□□□□□ -0.95
SYNE1-239ENST00000545694 DSG2Q14126 1118 aa9.09□□□□□ -0.95
SYNE1-239ENST00000545694 NKX1-1Q15270 411 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-239ENST00000545694 RAB3GAP2Q9H2M9 1393 aa9.09□□□□□ -0.95
SYNE1-239ENST00000545694 GCC2Q8IWJ2 1684 aa9.08□□□□□ -0.96
SYNE1-239ENST00000545694 PTCD2Q8WV60 388 aaKnown RBP9.08□□□□□ -0.96
SYNE1-239ENST00000545694 ROCK1Q13464 1354 aa9.08□□□□□ -0.96
SYNE1-239ENST00000545694 DNMT1P26358 1616 aaKnown RBP9.07□□□□□ -0.96
SYNE1-239ENST00000545694 KDM4FA0A1W2PPD8 638 aa9.07□□□□□ -0.96
SYNE1-239ENST00000545694 TIMELESSQ9UNS1 1208 aa9.07□□□□□ -0.96
SYNE1-239ENST00000545694 GPATCH8Q9UKJ3 1502 aaKnown RBP9.05□□□□□ -0.96
SYNE1-239ENST00000545694 CDC42BPAQ5VT25 1732 aa9.05□□□□□ -0.96
SYNE1-239ENST00000545694 ABCC10Q5T3U5 1492 aa9.05□□□□□ -0.96
SYNE1-239ENST00000545694 ITGAEP38570 1179 aa9.05□□□□□ -0.96
SYNE1-239ENST00000545694 KDM5BQ9UGL1 1544 aa9.05□□□□□ -0.96
SYNE1-239ENST00000545694 NAIPQ13075 1403 aa9.05□□□□□ -0.96
SYNE1-239ENST00000545694 ADGBQ8N7X0 1667 aa9.04□□□□□ -0.96
SYNE1-239ENST00000545694 ARHGAP33O14559 1287 aa9.04□□□□□ -0.96
SYNE1-239ENST00000545694 RSPH4AQ5TD94 716 aa9.04□□□□□ -0.96
SYNE1-239ENST00000545694 PSDA5PKW4 1024 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-239ENST00000545694 PSEN2P49810 448 aa9.03□□□□□ -0.96
SYNE1-239ENST00000545694 CFDP1Q9UEE9 299 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-239ENST00000545694 DAPK1P53355 1430 aa9.03□□□□□ -0.96
SYNE1-239ENST00000545694 SHANK2Q9UPX8 1470 aa9.02□□□□□ -0.96
SYNE1-239ENST00000545694 CROCC2H7BZ55 1655 aa9.02□□□□□ -0.97
SYNE1-239ENST00000545694 TBC1D12O60347 775 aa9.02□□□□□ -0.97
SYNE1-239ENST00000545694 DMRTA1Q5VZB9 504 aa9.02□□□□□ -0.97
SYNE1-239ENST00000545694 PTPRKQ15262 1439 aa9.02□□□□□ -0.97
SYNE1-239ENST00000545694 ARHGEF5Q12774 1597 aa9.02□□□□□ -0.97
SYNE1-239ENST00000545694 ADGRL2O95490 1459 aa9.02□□□□□ -0.97
SYNE1-239ENST00000545694 CAMSAP2Q08AD1 1489 aa9.02□□□□□ -0.97
SYNE1-239ENST00000545694 PLEKHH2Q8IVE3 1493 aa9.02□□□□□ -0.97
SYNE1-239ENST00000545694 PREX2Q70Z35 1606 aa9.02□□□□□ -0.97
SYNE1-239ENST00000545694 ADGRD1Q6QNK2 874 aa9.01□□□□□ -0.97
SYNE1-239ENST00000545694 UPF1Q92900 1129 aaKnown RBP eCLIP9.01□□□□□ -0.97
SYNE1-239ENST00000545694 MYO5CQ9NQX4 1742 aa9.01□□□□□ -0.97
SYNE1-239ENST00000545694 ARAP3Q8WWN8 1544 aa9□□□□□ -0.97
SYNE1-239ENST00000545694 ERCC6L2Q5T890 1561 aa9□□□□□ -0.97
SYNE1-239ENST00000545694 ABCC5O15440 1437 aa9□□□□□ -0.97
SYNE1-239ENST00000545694 DNAJC5Q9H3Z4 198 aa9□□□□□ -0.97
SYNE1-239ENST00000545694 ZCCHC11Q5TAX3 1644 aaKnown RBP9□□□□□ -0.97
SYNE1-239ENST00000545694 MAPKBP1O60336 1514 aa9□□□□□ -0.97
SYNE1-239ENST00000545694 ARID3CA6NKF2 412 aa8.99□□□□□ -0.97
SYNE1-239ENST00000545694 PPP4R3BQ5MIZ7 849 aa8.99□□□□□ -0.97
SYNE1-239ENST00000545694 CDC42BPBQ9Y5S2 1711 aa8.99□□□□□ -0.97
SYNE1-239ENST00000545694 KIAA1107Q9UPP5 1409 aa8.98□□□□□ -0.97
SYNE1-239ENST00000545694 ANKRD30AQ9BXX3 1397 aa8.98□□□□□ -0.97
SYNE1-239ENST00000545694 OXER1Q8TDS5 423 aa8.97□□□□□ -0.97
SYNE1-239ENST00000545694 CRISPLD2Q9H0B8 497 aa8.97□□□□□ -0.97
SYNE1-239ENST00000545694 NCOA1Q15788 1441 aa8.97□□□□□ -0.97
SYNE1-239ENST00000545694 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.96□□□□□ -0.97
SYNE1-239ENST00000545694 MAST1Q9Y2H9 1570 aa8.96□□□□□ -0.97
SYNE1-239ENST00000545694 RYDENQ9NUL5 291 aaKnown RBP8.96□□□□□ -0.98
SYNE1-239ENST00000545694 TSPY4P0CV99 314 aa8.95□□□□□ -0.98
SYNE1-239ENST00000545694 TSPY10P0CW01 314 aa8.95□□□□□ -0.98
SYNE1-239ENST00000545694 PPP1R15BQ5SWA1 713 aa8.95□□□□□ -0.98
SYNE1-239ENST00000545694 KCNK17Q96T54 332 aa8.95□□□□□ -0.98
SYNE1-239ENST00000545694 NCKAP5LQ9HCH0 1330 aa8.95□□□□□ -0.98
SYNE1-239ENST00000545694 CCDC141Q6ZP82 1450 aa8.95□□□□□ -0.98
SYNE1-239ENST00000545694 TK2O00142 265 aa8.94□□□□□ -0.98
SYNE1-239ENST00000545694 PLCH2O75038 1416 aa8.94□□□□□ -0.98
SYNE1-239ENST00000545694 WDR7Q9Y4E6 1490 aa8.94□□□□□ -0.98
SYNE1-239ENST00000545694 TTC37Q6PGP7 1564 aa8.94□□□□□ -0.98
SYNE1-239ENST00000545694 HRO43593 1189 aa8.93□□□□□ -0.98
SYNE1-239ENST00000545694 GTPBP6O43824 516 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-239ENST00000545694 PDE4AP27815 886 aa8.93□□□□□ -0.98
SYNE1-239ENST00000545694 EFCAB2Q5VUJ9 269 aa8.93□□□□□ -0.98
SYNE1-239ENST00000545694 HCSTQ9UBK5 93 aa8.93□□□□□ -0.98
SYNE1-239ENST00000545694 C9orf84Q5VXU9 1444 aa8.93□□□□□ -0.98
SYNE1-239ENST00000545694 MBD5Q9P267 1494 aa8.93□□□□□ -0.98
SYNE1-239ENST00000545694 ARHGAP5Q13017 1502 aa8.93□□□□□ -0.98
SYNE1-239ENST00000545694 SAMD9LQ8IVG5 1584 aa8.93□□□□□ -0.98
SYNE1-239ENST00000545694 ABCA9Q8IUA7 1624 aa8.92□□□□□ -0.98
SYNE1-239ENST00000545694 ZNF644Q9H582 1327 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-239ENST00000545694 ZNF454Q8N9F8 522 aa8.92□□□□□ -0.98
SYNE1-239ENST00000545694 RRP7BPQ9NSQ0 103 aa8.92□□□□□ -0.98
SYNE1-239ENST00000545694 CHIC2Q9UKJ5 165 aa8.92□□□□□ -0.98
SYNE1-239ENST00000545694 PLXNC1O60486 1568 aa8.91□□□□□ -0.98
SYNE1-239ENST00000545694 STAC3Q96MF2 364 aa8.91□□□□□ -0.98
SYNE1-239ENST00000545694 ZNF777Q9ULD5 760 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-239ENST00000545694 KDM5DQ9BY66 1539 aa8.9□□□□□ -0.98
SYNE1-239ENST00000545694 ANKRD50Q9ULJ7 1429 aa8.9□□□□□ -0.98
SYNE1-239ENST00000545694 KCTD12Q96CX2 325 aaKnown RBP8.9□□□□□ -0.98
SYNE1-239ENST00000545694 LARP6Q9BRS8 491 aaKnown RBP8.9□□□□□ -0.98
SYNE1-239ENST00000545694 PLA2G2EQ9NZK7 142 aa8.9□□□□□ -0.98
SYNE1-239ENST00000545694 TRIM52Q96A61 297 aa8.89□□□□□ -0.99
SYNE1-239ENST00000545694 KCNH8Q96L42 1107 aa8.89□□□□□ -0.99
SYNE1-239ENST00000545694 MPHOSPH9Q99550 1183 aa8.89□□□□□ -0.99
SYNE1-239ENST00000545694 CFAP74Q9C0B2 1584 aa8.89□□□□□ -0.99
SYNE1-239ENST00000545694 RTEL1-TNFRSF6BF6WH68 1400 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms