RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 NOL8Q76FK4 1167 aaKnown RBP17.74■□□□□ 0.43
LIMS1-215ENST00000544547 KIF3BO15066 747 aa17.73■□□□□ 0.43
LIMS1-215ENST00000544547 ABCC5O15440 1437 aa17.73■□□□□ 0.43
LIMS1-215ENST00000544547 EFCAB2Q5VUJ9 269 aa17.72■□□□□ 0.43
LIMS1-215ENST00000544547 XRCC6P12956 609 aaKnown RBP eCLIP17.72■□□□□ 0.43
LIMS1-215ENST00000544547 NUTM2DQ5VT03 806 aaPredicted RBP17.72■□□□□ 0.43
LIMS1-215ENST00000544547 PDZRN3Q9UPQ7 1066 aa17.72■□□□□ 0.43
LIMS1-215ENST00000544547 GGT6Q6P531 493 aa17.71■□□□□ 0.43
LIMS1-215ENST00000544547 RSPH4AQ5TD94 716 aa17.7■□□□□ 0.42
LIMS1-215ENST00000544547 RNF214Q8ND24 703 aa17.69■□□□□ 0.42
LIMS1-215ENST00000544547 RPRD2Q5VT52 1461 aaKnown RBP17.69■□□□□ 0.42
LIMS1-215ENST00000544547 MCTP1Q6DN14 999 aa17.69■□□□□ 0.42
LIMS1-215ENST00000544547 MPNDQ8N594 471 aa17.69■□□□□ 0.42
LIMS1-215ENST00000544547 STK26Q9P289 416 aa17.69■□□□□ 0.42
LIMS1-215ENST00000544547 DRC7Q8IY82 874 aa17.68■□□□□ 0.42
LIMS1-215ENST00000544547 TRAK1Q9UPV9 953 aa17.68■□□□□ 0.42
LIMS1-215ENST00000544547 LNPKQ9C0E8 428 aa17.68■□□□□ 0.42
LIMS1-215ENST00000544547 ANKRD45Q5TZF3 282 aa17.68■□□□□ 0.42
LIMS1-215ENST00000544547 PRDM10Q9NQV6 1147 aa17.67■□□□□ 0.42
LIMS1-215ENST00000544547 TBC1D2Q9BYX2 928 aa17.66■□□□□ 0.42
LIMS1-215ENST00000544547 CAVIN1Q6NZI2 390 aaKnown RBP17.66■□□□□ 0.42
LIMS1-215ENST00000544547 PTPRGP23470 1445 aa17.66■□□□□ 0.42
LIMS1-215ENST00000544547 ROCK1Q13464 1354 aa17.65■□□□□ 0.42
LIMS1-215ENST00000544547 IPO8O15397 1037 aaKnown RBP17.65■□□□□ 0.42
LIMS1-215ENST00000544547 SPAG9O60271 1321 aaKnown RBP17.65■□□□□ 0.42
LIMS1-215ENST00000544547 GRIN2BQ13224 1484 aa17.65■□□□□ 0.42
LIMS1-215ENST00000544547 SRPK2P78362 688 aaKnown RBP17.65■□□□□ 0.42
LIMS1-215ENST00000544547 C8orf34Q49A92 452 aa17.65■□□□□ 0.42
LIMS1-215ENST00000544547 CLCN1P35523 988 aa17.64■□□□□ 0.42
LIMS1-215ENST00000544547 MLECQ14165 292 aa17.64■□□□□ 0.42
LIMS1-215ENST00000544547 ZKSCAN2Q63HK3 967 aa17.64■□□□□ 0.42
LIMS1-215ENST00000544547 HECW1Q76N89 1606 aa17.64■□□□□ 0.41
LIMS1-215ENST00000544547 PPP2R1AP30153 589 aa17.64■□□□□ 0.41
LIMS1-215ENST00000544547 TROQ12816 1431 aaPredicted RBP17.64■□□□□ 0.41
LIMS1-215ENST00000544547 SOX12O15370 315 aa17.63■□□□□ 0.41
LIMS1-215ENST00000544547 KANK1Q14678 1352 aa17.63■□□□□ 0.41
LIMS1-215ENST00000544547 BCL11BQ9C0K0 894 aaPredicted RBP17.63■□□□□ 0.41
LIMS1-215ENST00000544547 URB2Q14146 1524 aaKnown RBP17.63■□□□□ 0.41
LIMS1-215ENST00000544547 C9orf84Q5VXU9 1444 aa17.62■□□□□ 0.41
LIMS1-215ENST00000544547 SNAPC4Q5SXM2 1469 aa17.61■□□□□ 0.41
LIMS1-215ENST00000544547 MAP7D2Q96T17 732 aa17.61■□□□□ 0.41
LIMS1-215ENST00000544547 CCDC173Q0VFZ6 552 aa17.61■□□□□ 0.41
LIMS1-215ENST00000544547 ZNF771Q7L3S4 317 aaPredicted RBP17.61■□□□□ 0.41
LIMS1-215ENST00000544547 PDCL3Q9H2J4 239 aa17.61■□□□□ 0.41
LIMS1-215ENST00000544547 UQCRHLA0A096LP55 91 aa17.61■□□□□ 0.41
LIMS1-215ENST00000544547 ELL2O00472 640 aaPredicted RBP17.61■□□□□ 0.41
LIMS1-215ENST00000544547 UQCRHP07919 91 aa17.61■□□□□ 0.41
LIMS1-215ENST00000544547 DZIP1LQ8IYY4 767 aaKnown RBP17.61■□□□□ 0.41
LIMS1-215ENST00000544547 SYAP1Q96A49 352 aaPredicted RBP17.6■□□□□ 0.41
LIMS1-215ENST00000544547 CHMP4BQ9H444 224 aaKnown RBP17.59■□□□□ 0.41
LIMS1-215ENST00000544547 CUL7Q14999 1698 aa17.59■□□□□ 0.41
LIMS1-215ENST00000544547 CSPP1Q1MSJ5 1256 aa17.59■□□□□ 0.41
LIMS1-215ENST00000544547 IGHDP01880 384 aa17.59■□□□□ 0.41
LIMS1-215ENST00000544547 ZHX1Q9UKY1 873 aaPredicted RBP17.59■□□□□ 0.41
LIMS1-215ENST00000544547 THOC2Q8NI27 1593 aaKnown RBP17.58■□□□□ 0.41
LIMS1-215ENST00000544547 SEC24BO95487 1268 aa17.58■□□□□ 0.4
LIMS1-215ENST00000544547 ZSCAN30Q86W11 494 aa17.57■□□□□ 0.4
LIMS1-215ENST00000544547 UGGT2Q9NYU1 1516 aa17.57■□□□□ 0.4
LIMS1-215ENST00000544547 PLB1Q6P1J6 1458 aa17.57■□□□□ 0.4
LIMS1-215ENST00000544547 GOLGA6L4A6NEF3 574 aa17.57■□□□□ 0.4
LIMS1-215ENST00000544547 CFAP43Q8NDM7 1665 aa17.56■□□□□ 0.4
LIMS1-215ENST00000544547 ZRSR1Q15695 479 aaKnown RBP17.56■□□□□ 0.4
LIMS1-215ENST00000544547 ST18O60284 1047 aa17.56■□□□□ 0.4
LIMS1-215ENST00000544547 XPCQ01831 940 aaPredicted RBP17.56■□□□□ 0.4
LIMS1-215ENST00000544547 PDE3AQ14432 1141 aa17.56■□□□□ 0.4
LIMS1-215ENST00000544547 CFAP70Q5T0N1 1121 aa17.55■□□□□ 0.4
LIMS1-215ENST00000544547 AFAP1Q8N556 730 aa17.55■□□□□ 0.4
LIMS1-215ENST00000544547 EIF3AQ14152 1382 aaKnown RBP17.55■□□□□ 0.4
LIMS1-215ENST00000544547 IQGAP2Q13576 1575 aa17.55■□□□□ 0.4
LIMS1-215ENST00000544547 PRPF40AO75400 957 aaKnown RBP17.55■□□□□ 0.4
LIMS1-215ENST00000544547 OS9Q13438 667 aaPredicted RBP17.55■□□□□ 0.4
LIMS1-215ENST00000544547 RNF123Q5XPI4 1314 aa17.54■□□□□ 0.4
LIMS1-215ENST00000544547 CAMSAP2Q08AD1 1489 aa17.54■□□□□ 0.4
LIMS1-215ENST00000544547 DUSP27Q5VZP5 1158 aa17.53■□□□□ 0.4
LIMS1-215ENST00000544547 SLFN5Q08AF3 891 aa17.53■□□□□ 0.4
LIMS1-215ENST00000544547 MCCP23508 829 aa17.52■□□□□ 0.4
LIMS1-215ENST00000544547 DHX29Q7Z478 1369 aaKnown RBP17.52■□□□□ 0.4
LIMS1-215ENST00000544547 TAOK2Q9UL54 1235 aa17.52■□□□□ 0.4
LIMS1-215ENST00000544547 DDX19BQ9UMR2 479 aa17.52■□□□□ 0.4
LIMS1-215ENST00000544547 ISY1Q9ULR0 285 aaKnown RBP17.52■□□□□ 0.39
LIMS1-215ENST00000544547 TNNT3P45378 269 aaPredicted RBP17.51■□□□□ 0.39
LIMS1-215ENST00000544547 MTERF4Q7Z6M4 381 aaKnown RBP17.51■□□□□ 0.39
LIMS1-215ENST00000544547 KCNJ4P48050 445 aa17.5■□□□□ 0.39
LIMS1-215ENST00000544547 FGD1P98174 961 aa17.5■□□□□ 0.39
LIMS1-215ENST00000544547 MAPK8IP2Q13387 824 aaPredicted RBP17.5■□□□□ 0.39
LIMS1-215ENST00000544547 TNPO1Q92973 898 aaKnown RBP17.49■□□□□ 0.39
LIMS1-215ENST00000544547 ARHGEF11O15085 1522 aa17.49■□□□□ 0.39
LIMS1-215ENST00000544547 HDGFP51858 240 aaKnown RBP17.49■□□□□ 0.39
LIMS1-215ENST00000544547 TMEM132EQ6IEE7 984 aa17.49■□□□□ 0.39
LIMS1-215ENST00000544547 TCP11L2Q8N4U5 519 aa17.49■□□□□ 0.39
LIMS1-215ENST00000544547 NUCB2P80303 420 aa17.49■□□□□ 0.39
LIMS1-215ENST00000544547 ERBINQ96RT1 1412 aa17.48■□□□□ 0.39
LIMS1-215ENST00000544547 KIAA0586Q9BVV6 1533 aa17.48■□□□□ 0.39
LIMS1-215ENST00000544547 CCDC39Q9UFE4 941 aa17.48■□□□□ 0.39
LIMS1-215ENST00000544547 ZNF592Q92610 1267 aa17.48■□□□□ 0.39
LIMS1-215ENST00000544547 CBX1P83916 185 aa17.47■□□□□ 0.39
LIMS1-215ENST00000544547 TRIM6-TRIM34B2RNG4 842 aa17.47■□□□□ 0.39
LIMS1-215ENST00000544547 TBC1D32Q96NH3 1257 aa17.47■□□□□ 0.39
LIMS1-215ENST00000544547 TRHP20396 242 aaPredicted RBP17.46■□□□□ 0.39
LIMS1-215ENST00000544547 CFAP44Q96MT7 982 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms