RNA–Protein interactions for RNA: ENST00000543324.1

CIT-213, Transcript of citron rho-interacting serine/threonine kinase, human

TSL 3

Gene CIT, Length 497 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIT-213	ENST00000543324	TXNDC2	Q86VQ3	553 aa		10.62	□□□□□ -0.71
CIT-213	ENST00000543324	BRWD3	Q6RI45	1802 aa		10.62	□□□□□ -0.71
CIT-213	ENST00000543324	PNPLA6	Q8IY17	1366 aa		10.62	□□□□□ -0.71
CIT-213	ENST00000543324	FNBP4	Q8N3X1	1017 aa	Predicted RBP	10.61	□□□□□ -0.71
CIT-213	ENST00000543324	MROH1	Q8NDA8	1641 aa		10.61	□□□□□ -0.71
CIT-213	ENST00000543324	FMN1	Q68DA7	1419 aa		10.6	□□□□□ -0.71
CIT-213	ENST00000543324	RALGAPB	Q86X10	1494 aa		10.6	□□□□□ -0.71
CIT-213	ENST00000543324	TRO	Q12816	1431 aa	Predicted RBP	10.59	□□□□□ -0.71
CIT-213	ENST00000543324	SYCP2	Q9BX26	1530 aa		10.59	□□□□□ -0.71
CIT-213	ENST00000543324	ADAMTS2	O95450	1211 aa		10.59	□□□□□ -0.71
CIT-213	ENST00000543324	BAG6	P46379	1132 aa		10.59	□□□□□ -0.71
CIT-213	ENST00000543324	TET3	O43151	1660 aa		10.59	□□□□□ -0.71
CIT-213	ENST00000543324	GPATCH8	Q9UKJ3	1502 aa	Known RBP	10.58	□□□□□ -0.72
CIT-213	ENST00000543324	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	10.58	□□□□□ -0.72
CIT-213	ENST00000543324	BRINP3	Q76B58	766 aa		10.58	□□□□□ -0.72
CIT-213	ENST00000543324	CAMSAP2	Q08AD1	1489 aa		10.57	□□□□□ -0.72
CIT-213	ENST00000543324	LRRC59	Q96AG4	307 aa	Known RBP	10.57	□□□□□ -0.72
CIT-213	ENST00000543324	ASXL1	Q8IXJ9	1541 aa		10.57	□□□□□ -0.72
CIT-213	ENST00000543324	NCOA3	Q9Y6Q9	1424 aa		10.57	□□□□□ -0.72
CIT-213	ENST00000543324	ERVK-7	P63135	1459 aa		10.55	□□□□□ -0.72
CIT-213	ENST00000543324	GJD4	Q96KN9	370 aa	Predicted RBP	10.55	□□□□□ -0.72
CIT-213	ENST00000543324	EID1	Q9Y6B2	187 aa		10.55	□□□□□ -0.72
CIT-213	ENST00000543324	CLIP1	P30622	1438 aa		10.55	□□□□□ -0.72
CIT-213	ENST00000543324	PTCH1	Q13635	1447 aa		10.55	□□□□□ -0.72
CIT-213	ENST00000543324	GLI3	P10071	1580 aa		10.55	□□□□□ -0.72
CIT-213	ENST00000543324	CDC42BPA	Q5VT25	1732 aa		10.55	□□□□□ -0.72
CIT-213	ENST00000543324	CADPS2	Q86UW7	1296 aa		10.54	□□□□□ -0.72
CIT-213	ENST00000543324	PPP1R1B	Q9UD71	204 aa	Predicted RBP	10.54	□□□□□ -0.72
CIT-213	ENST00000543324	WASHC2C	Q9Y4E1	1318 aa		10.54	□□□□□ -0.72
CIT-213	ENST00000543324	CASKIN1	Q8WXD9	1431 aa		10.53	□□□□□ -0.72
CIT-213	ENST00000543324	CDK11A	Q9UQ88	783 aa	Predicted RBP	10.53	□□□□□ -0.72
CIT-213	ENST00000543324	FYCO1	Q9BQS8	1478 aa		10.53	□□□□□ -0.72
CIT-213	ENST00000543324	CHD2	O14647	1828 aa	Known RBP	10.53	□□□□□ -0.72
CIT-213	ENST00000543324	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	10.53	□□□□□ -0.72
CIT-213	ENST00000543324	COL13A1	Q5TAT6	717 aa	Predicted RBP	10.52	□□□□□ -0.73
CIT-213	ENST00000543324	SLC26A8	Q96RN1	970 aa		10.52	□□□□□ -0.73
CIT-213	ENST00000543324	CCDC18	Q5T9S5	1454 aa		10.52	□□□□□ -0.73
CIT-213	ENST00000543324	RGPD1	P0DJD0	1748 aa		10.51	□□□□□ -0.73
CIT-213	ENST00000543324	EN1	Q05925	392 aa	Predicted RBP	10.51	□□□□□ -0.73
CIT-213	ENST00000543324	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	10.51	□□□□□ -0.73
CIT-213	ENST00000543324	TMEM2	Q9UHN6	1383 aa		10.51	□□□□□ -0.73
CIT-213	ENST00000543324	DISP2	A7MBM2	1401 aa		10.5	□□□□□ -0.73
CIT-213	ENST00000543324	DHX29	Q7Z478	1369 aa	Known RBP	10.5	□□□□□ -0.73
CIT-213	ENST00000543324	HSPA6	P17066	643 aa		10.49	□□□□□ -0.73
CIT-213	ENST00000543324	UBTF	P17480	764 aa	Known RBP	10.49	□□□□□ -0.73
CIT-213	ENST00000543324	ATF3	P18847	181 aa		10.49	□□□□□ -0.73
CIT-213	ENST00000543324	RANGAP1	P46060	587 aa	Predicted RBP	10.49	□□□□□ -0.73
CIT-213	ENST00000543324	HNRNPM	P52272	730 aa	Known RBP eCLIP	10.49	□□□□□ -0.73
CIT-213	ENST00000543324	KIAA1107	Q9UPP5	1409 aa		10.49	□□□□□ -0.73
CIT-213	ENST00000543324	KIF3B	O15066	747 aa		10.48	□□□□□ -0.73
CIT-213	ENST00000543324	C19orf44	Q9H6X5	657 aa		10.48	□□□□□ -0.73
CIT-213	ENST00000543324	SPON1	Q9HCB6	807 aa		10.48	□□□□□ -0.73
CIT-213	ENST00000543324	MARF1	Q9Y4F3	1742 aa	Known RBP	10.47	□□□□□ -0.73
CIT-213	ENST00000543324	TNS4	Q8IZW8	715 aa		10.47	□□□□□ -0.73
CIT-213	ENST00000543324	SHANK3	Q9BYB0	1731 aa		10.47	□□□□□ -0.73
CIT-213	ENST00000543324	TNS1	Q9HBL0	1735 aa	Known RBP	10.47	□□□□□ -0.73
CIT-213	ENST00000543324	PIK3C2B	O00750	1634 aa		10.46	□□□□□ -0.74
CIT-213	ENST00000543324	COL22A1	Q8NFW1	1626 aa	Predicted RBP	10.45	□□□□□ -0.74
CIT-213	ENST00000543324	KCNQ2	O43526	872 aa		10.45	□□□□□ -0.74
CIT-213	ENST00000543324	C14orf37	Q86TY3	774 aa		10.45	□□□□□ -0.74
CIT-213	ENST00000543324	SEPT12	Q8IYM1	358 aa		10.44	□□□□□ -0.74
CIT-213	ENST00000543324	ZNF777	Q9ULD5	760 aa	Predicted RBP	10.44	□□□□□ -0.74
CIT-213	ENST00000543324	PLEKHH2	Q8IVE3	1493 aa		10.43	□□□□□ -0.74
CIT-213	ENST00000543324	DCC	P43146	1447 aa		10.43	□□□□□ -0.74
CIT-213	ENST00000543324	MST1R	Q04912	1400 aa		10.43	□□□□□ -0.74
CIT-213	ENST00000543324	KRT27	Q7Z3Y8	459 aa		10.43	□□□□□ -0.74
CIT-213	ENST00000543324	DDX17	Q92841	729 aa	Known RBP	10.43	□□□□□ -0.74
CIT-213	ENST00000543324	LAMC1	P11047	1609 aa		10.43	□□□□□ -0.74
CIT-213	ENST00000543324	CFAP65	Q6ZU64	1925 aa	Known RBP	10.43	□□□□□ -0.74
CIT-213	ENST00000543324	RREB1	Q92766	1687 aa		10.42	□□□□□ -0.74
CIT-213	ENST00000543324	EZH2	Q15910	746 aa	Known RBP	10.42	□□□□□ -0.74
CIT-213	ENST00000543324	NRK	Q7Z2Y5	1582 aa		10.42	□□□□□ -0.74
CIT-213	ENST00000543324	EFCAB6	Q5THR3	1501 aa		10.41	□□□□□ -0.74
CIT-213	ENST00000543324	MYOM2	P54296	1465 aa		10.41	□□□□□ -0.74
CIT-213	ENST00000543324	NUP188	Q5SRE5	1749 aa		10.41	□□□□□ -0.74
CIT-213	ENST00000543324	MYOM1	P52179	1685 aa		10.4	□□□□□ -0.74
CIT-213	ENST00000543324	EHBP1L1	Q8N3D4	1523 aa		10.39	□□□□□ -0.75
CIT-213	ENST00000543324	CAMKK2	Q96RR4	588 aa		10.39	□□□□□ -0.75
CIT-213	ENST00000543324	ADGRB2	O60241	1585 aa		10.39	□□□□□ -0.75
CIT-213	ENST00000543324	SLIT2	O94813	1529 aa		10.38	□□□□□ -0.75
CIT-213	ENST00000543324	ONECUT3	O60422	494 aa	Predicted RBP	10.38	□□□□□ -0.75
CIT-213	ENST00000543324	UNC5CL	Q8IV45	518 aa		10.38	□□□□□ -0.75
CIT-213	ENST00000543324	ATP1B4	Q9UN42	357 aa	Predicted RBP	10.38	□□□□□ -0.75
CIT-213	ENST00000543324	CEP162	Q5TB80	1403 aa		10.38	□□□□□ -0.75
CIT-213	ENST00000543324	PARD3	Q8TEW0	1356 aa		10.38	□□□□□ -0.75
CIT-213	ENST00000543324	ADGRB3	O60242	1522 aa		10.37	□□□□□ -0.75
CIT-213	ENST00000543324	FAM83G	A6ND36	823 aa		10.36	□□□□□ -0.75
CIT-213	ENST00000543324	CEP152	O94986	1710 aa		10.36	□□□□□ -0.75
CIT-213	ENST00000543324	PPP1R15A	O75807	674 aa	Predicted RBP	10.35	□□□□□ -0.75
CIT-213	ENST00000543324	DNAJC5G	Q8N7S2	189 aa		10.35	□□□□□ -0.75
CIT-213	ENST00000543324	SOS2	Q07890	1332 aa	Predicted RBP	10.34	□□□□□ -0.75
CIT-213	ENST00000543324	GOLGB1	Q14789	3259 aa	Known RBP	10.34	□□□□□ -0.75
CIT-213	ENST00000543324	CASZ1	Q86V15	1759 aa		10.34	□□□□□ -0.75
CIT-213	ENST00000543324	DLC1	Q96QB1	1528 aa		10.33	□□□□□ -0.76
CIT-213	ENST00000543324	PCNT	O95613	3336 aa		10.33	□□□□□ -0.76
CIT-213	ENST00000543324	SYT17	Q9BSW7	474 aa		10.33	□□□□□ -0.76
CIT-213	ENST00000543324	MBD5	Q9P267	1494 aa		10.33	□□□□□ -0.76
CIT-213	ENST00000543324	PLEKHG1	Q9ULL1	1385 aa		10.32	□□□□□ -0.76
CIT-213	ENST00000543324	NBPF8	Q3BBV2	869 aa		10.31	□□□□□ -0.76
CIT-213	ENST00000543324	NBPF14	Q5TI25	921 aa		10.31	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms