RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 NCKAP5LQ9HCH0 1330 aa7.88□□□□□ -1.15
CLIP1-217ENST00000543205 LARP6Q9BRS8 491 aaKnown RBP7.87□□□□□ -1.15
CLIP1-217ENST00000543205 POTEB3A0JP26 581 aa7.86□□□□□ -1.15
CLIP1-217ENST00000543205 POTEBQ6S5H4 581 aa7.86□□□□□ -1.15
CLIP1-217ENST00000543205 TIAM1Q13009 1591 aa7.86□□□□□ -1.15
CLIP1-217ENST00000543205 MAP3K1Q13233 1512 aa7.86□□□□□ -1.15
CLIP1-217ENST00000543205 CRISPLD2Q9H0B8 497 aa7.86□□□□□ -1.15
CLIP1-217ENST00000543205 KIF14Q15058 1648 aa7.85□□□□□ -1.15
CLIP1-217ENST00000543205 MAGI3Q5TCQ9 1506 aa7.85□□□□□ -1.15
CLIP1-217ENST00000543205 C3orf67Q6ZVT6 689 aa7.85□□□□□ -1.15
CLIP1-217ENST00000543205 ABCA9Q8IUA7 1624 aa7.85□□□□□ -1.15
CLIP1-217ENST00000543205 MAP3K4Q9Y6R4 1608 aa7.85□□□□□ -1.15
CLIP1-217ENST00000543205 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.85□□□□□ -1.15
CLIP1-217ENST00000543205 TEX14Q8IWB6 1497 aa7.85□□□□□ -1.15
CLIP1-217ENST00000543205 CFAP43Q8NDM7 1665 aa7.85□□□□□ -1.15
CLIP1-217ENST00000543205 KANK4Q5T7N3 995 aaPredicted RBP7.85□□□□□ -1.15
CLIP1-217ENST00000543205 EHBP1L1Q8N3D4 1523 aa7.84□□□□□ -1.15
CLIP1-217ENST00000543205 TSPOAP1O95153 1857 aa7.84□□□□□ -1.15
CLIP1-217ENST00000543205 LRRC9Q6ZRR7 1453 aa7.84□□□□□ -1.15
CLIP1-217ENST00000543205 DDX27Q96GQ7 796 aaKnown RBP7.83□□□□□ -1.16
CLIP1-217ENST00000543205 CCNB3Q8WWL7 1395 aa7.83□□□□□ -1.16
CLIP1-217ENST00000543205 TTC37Q6PGP7 1564 aa7.83□□□□□ -1.16
CLIP1-217ENST00000543205 MFSD10Q14728 455 aa7.83□□□□□ -1.16
CLIP1-217ENST00000543205 TMC2Q8TDI7 906 aa7.83□□□□□ -1.16
CLIP1-217ENST00000543205 PLCH2O75038 1416 aa7.82□□□□□ -1.16
CLIP1-217ENST00000543205 EFCAB2Q5VUJ9 269 aa7.82□□□□□ -1.16
CLIP1-217ENST00000543205 KCNV2Q8TDN2 545 aa7.82□□□□□ -1.16
CLIP1-217ENST00000543205 PTGER2P43116 358 aa7.81□□□□□ -1.16
CLIP1-217ENST00000543205 GPHNQ9NQX3 736 aaPredicted RBP7.81□□□□□ -1.16
CLIP1-217ENST00000543205 E2F4Q16254 413 aa7.81□□□□□ -1.16
CLIP1-217ENST00000543205 PPRC1Q5VV67 1664 aaKnown RBP7.81□□□□□ -1.16
CLIP1-217ENST00000543205 PHLDB1Q86UU1 1377 aa7.81□□□□□ -1.16
CLIP1-217ENST00000543205 FANCAO15360 1455 aa7.8□□□□□ -1.16
CLIP1-217ENST00000543205 NCOA2Q15596 1464 aa7.8□□□□□ -1.16
CLIP1-217ENST00000543205 SUPT6HQ7KZ85 1726 aaKnown RBP7.8□□□□□ -1.16
CLIP1-217ENST00000543205 ARHGAP5Q13017 1502 aa7.8□□□□□ -1.16
CLIP1-217ENST00000543205 CFDP1Q9UEE9 299 aaPredicted RBP7.8□□□□□ -1.16
CLIP1-217ENST00000543205 ZNF777Q9ULD5 760 aaPredicted RBP7.8□□□□□ -1.16
CLIP1-217ENST00000543205 KDM6BO15054 1643 aa7.8□□□□□ -1.16
CLIP1-217ENST00000543205 NEO1Q92859 1461 aa7.8□□□□□ -1.16
CLIP1-217ENST00000543205 PPP1R15BQ5SWA1 713 aa7.79□□□□□ -1.16
CLIP1-217ENST00000543205 PPARGC1BQ86YN6 1023 aaKnown RBP7.79□□□□□ -1.16
CLIP1-217ENST00000543205 MYT1LQ9UL68 1186 aa7.79□□□□□ -1.16
CLIP1-217ENST00000543205 AKNAQ7Z591 1439 aa7.79□□□□□ -1.16
CLIP1-217ENST00000543205 GPATCH8Q9UKJ3 1502 aaKnown RBP7.79□□□□□ -1.16
CLIP1-217ENST00000543205 MYO5CQ9NQX4 1742 aa7.79□□□□□ -1.16
CLIP1-217ENST00000543205 BRPF1P55201 1214 aaPredicted RBP7.79□□□□□ -1.16
CLIP1-217ENST00000543205 ARAP3Q8WWN8 1544 aa7.79□□□□□ -1.16
CLIP1-217ENST00000543205 CFAP74Q9C0B2 1584 aa7.78□□□□□ -1.16
CLIP1-217ENST00000543205 C2orf72A6NCS6 295 aa7.78□□□□□ -1.16
CLIP1-217ENST00000543205 PREX2Q70Z35 1606 aa7.77□□□□□ -1.17
CLIP1-217ENST00000543205 DSG2Q14126 1118 aa7.77□□□□□ -1.17
CLIP1-217ENST00000543205 ADGRL1O94910 1474 aa7.77□□□□□ -1.17
CLIP1-217ENST00000543205 RAPGEF3O95398 923 aa7.76□□□□□ -1.17
CLIP1-217ENST00000543205 SCAPERQ9BY12 1400 aa7.76□□□□□ -1.17
CLIP1-217ENST00000543205 CDC42BPAQ5VT25 1732 aa7.76□□□□□ -1.17
CLIP1-217ENST00000543205 CDC42BPBQ9Y5S2 1711 aa7.76□□□□□ -1.17
CLIP1-217ENST00000543205 MYOM3Q5VTT5 1437 aa7.76□□□□□ -1.17
CLIP1-217ENST00000543205 TMEM92Q6UXU6 159 aa7.76□□□□□ -1.17
CLIP1-217ENST00000543205 DENND4BO75064 1496 aaPredicted RBP7.76□□□□□ -1.17
CLIP1-217ENST00000543205 COL17A1Q9UMD9 1497 aaPredicted RBP7.76□□□□□ -1.17
CLIP1-217ENST00000543205 ITSN2Q9NZM3 1697 aa7.75□□□□□ -1.17
CLIP1-217ENST00000543205 KIF3CO14782 793 aa7.75□□□□□ -1.17
CLIP1-217ENST00000543205 FOXK1P85037 733 aa7.75□□□□□ -1.17
CLIP1-217ENST00000543205 FBXO41Q8TF61 875 aa7.75□□□□□ -1.17
CLIP1-217ENST00000543205 ZNF644Q9H582 1327 aaPredicted RBP7.75□□□□□ -1.17
CLIP1-217ENST00000543205 PLEKHH2Q8IVE3 1493 aa7.74□□□□□ -1.17
CLIP1-217ENST00000543205 HNRNPMP52272 730 aaKnown RBP eCLIP7.74□□□□□ -1.17
CLIP1-217ENST00000543205 MIA2Q96PC5 1412 aa7.74□□□□□ -1.17
CLIP1-217ENST00000543205 PLPP6Q8IY26 295 aa7.74□□□□□ -1.17
CLIP1-217ENST00000543205 ARHGEF1Q92888 912 aaKnown RBP7.74□□□□□ -1.17
CLIP1-217ENST00000543205 HECW2Q9P2P5 1572 aa7.74□□□□□ -1.17
CLIP1-217ENST00000543205 CAMK2BQ13554 666 aa7.73□□□□□ -1.17
CLIP1-217ENST00000543205 AFAP1Q8N556 730 aa7.73□□□□□ -1.17
CLIP1-217ENST00000543205 KIAA1107Q9UPP5 1409 aa7.73□□□□□ -1.17
CLIP1-217ENST00000543205 SAMD9LQ8IVG5 1584 aa7.73□□□□□ -1.17
CLIP1-217ENST00000543205 HOXB1P14653 301 aaPredicted RBP7.73□□□□□ -1.17
CLIP1-217ENST00000543205 POGZQ7Z3K3 1410 aa7.72□□□□□ -1.17
CLIP1-217ENST00000543205 CAMSAP2Q08AD1 1489 aa7.72□□□□□ -1.17
CLIP1-217ENST00000543205 ABCC1P33527 1531 aa7.72□□□□□ -1.17
CLIP1-217ENST00000543205 RSPH4AQ5TD94 716 aa7.72□□□□□ -1.17
CLIP1-217ENST00000543205 FGD6Q6ZV73 1430 aa7.72□□□□□ -1.17
CLIP1-217ENST00000543205 ZNF518AQ6AHZ1 1483 aa7.72□□□□□ -1.17
CLIP1-217ENST00000543205 SYCP2Q9BX26 1530 aa7.72□□□□□ -1.17
CLIP1-217ENST00000543205 ARHGEF12Q9NZN5 1544 aa7.72□□□□□ -1.17
CLIP1-217ENST00000543205 FAM50AQ14320 339 aaKnown RBP7.71□□□□□ -1.17
CLIP1-217ENST00000543205 ERBB3P21860 1342 aa7.71□□□□□ -1.17
CLIP1-217ENST00000543205 TRAPPC8Q9Y2L5 1435 aa7.71□□□□□ -1.17
CLIP1-217ENST00000543205 SPAG9O60271 1321 aaKnown RBP7.7□□□□□ -1.18
CLIP1-217ENST00000543205 TSPY4P0CV99 314 aa7.7□□□□□ -1.18
CLIP1-217ENST00000543205 TSPY10P0CW01 314 aa7.7□□□□□ -1.18
CLIP1-217ENST00000543205 PTPN23Q9H3S7 1636 aa7.7□□□□□ -1.18
CLIP1-217ENST00000543205 FRMPD1Q5SYB0 1578 aa7.7□□□□□ -1.18
CLIP1-217ENST00000543205 MBD5Q9P267 1494 aa7.7□□□□□ -1.18
CLIP1-217ENST00000543205 RICTORQ6R327 1708 aa7.69□□□□□ -1.18
CLIP1-217ENST00000543205 EMILIN3Q9NT22 766 aa7.69□□□□□ -1.18
CLIP1-217ENST00000543205 TCOF1Q13428 1488 aaKnown RBP7.68□□□□□ -1.18
CLIP1-217ENST00000543205 CCDC141Q6ZP82 1450 aa7.68□□□□□ -1.18
CLIP1-217ENST00000543205 MAGI2Q86UL8 1455 aa7.68□□□□□ -1.18
CLIP1-217ENST00000543205 ZMYM4Q5VZL5 1548 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms