RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 MAP3K4Q9Y6R4 1608 aa22.11■■□□□ 1.13
COL4A1-204ENST00000543140 NEURL4Q96JN8 1562 aa22.1■■□□□ 1.13
COL4A1-204ENST00000543140 RIMBP3CA6NJZ7 1639 aa22.08■■□□□ 1.13
COL4A1-204ENST00000543140 RIMBP3BA6NNM3 1639 aa22.08■■□□□ 1.13
COL4A1-204ENST00000543140 RIMBP3Q9UFD9 1639 aa22.08■■□□□ 1.13
COL4A1-204ENST00000543140 RICTORQ6R327 1708 aa22.08■■□□□ 1.13
COL4A1-204ENST00000543140 DIP2CQ9Y2E4 1556 aa22.08■■□□□ 1.12
COL4A1-204ENST00000543140 MYOM2P54296 1465 aa22.08■■□□□ 1.12
COL4A1-204ENST00000543140 NLRP13Q86W25 1043 aa22.08■■□□□ 1.12
COL4A1-204ENST00000543140 ABCC3O15438 1527 aa22.08■■□□□ 1.12
COL4A1-204ENST00000543140 IFT172Q9UG01 1749 aa22.07■■□□□ 1.12
COL4A1-204ENST00000543140 KIAA1210Q9ULL0 1709 aa22.07■■□□□ 1.12
COL4A1-204ENST00000543140 NOS1P29475 1434 aa22.06■■□□□ 1.12
COL4A1-204ENST00000543140 YEATS2Q9ULM3 1422 aa22.06■■□□□ 1.12
COL4A1-204ENST00000543140 FAM69CQ0P6D2 419 aa22.06■■□□□ 1.12
COL4A1-204ENST00000543140 EIF3AQ14152 1382 aaKnown RBP22.05■■□□□ 1.12
COL4A1-204ENST00000543140 LRPPRCP42704 1394 aaKnown RBP22.04■■□□□ 1.12
COL4A1-204ENST00000543140 ADGRB3O60242 1522 aa22.04■■□□□ 1.12
COL4A1-204ENST00000543140 CAMSAP1Q5T5Y3 1602 aa22.03■■□□□ 1.12
COL4A1-204ENST00000543140 CDCA8Q53HL2 280 aa22.02■■□□□ 1.12
COL4A1-204ENST00000543140 SIGLEC1Q9BZZ2 1709 aa22.01■■□□□ 1.11
COL4A1-204ENST00000543140 TSPOAP1O95153 1857 aa22■■□□□ 1.11
COL4A1-204ENST00000543140 KNSTRNQ9Y448 316 aa22■■□□□ 1.11
COL4A1-204ENST00000543140 GLI2P10070 1586 aa21.99■■□□□ 1.11
COL4A1-204ENST00000543140 NUTM2DQ5VT03 806 aaPredicted RBP21.99■■□□□ 1.11
COL4A1-204ENST00000543140 TSHZ2Q9NRE2 1034 aa21.99■■□□□ 1.11
COL4A1-204ENST00000543140 NRXN1Q9ULB1 1477 aa21.99■■□□□ 1.11
COL4A1-204ENST00000543140 PPLO60437 1756 aa21.98■■□□□ 1.11
COL4A1-204ENST00000543140 SMG6Q86US8 1419 aaKnown RBP21.98■■□□□ 1.11
COL4A1-204ENST00000543140 SALL2Q9Y467 1007 aaPredicted RBP21.98■■□□□ 1.11
COL4A1-204ENST00000543140 NUDCQ9Y266 331 aa21.97■■□□□ 1.11
COL4A1-204ENST00000543140 SYNMO15061 1565 aa21.96■■□□□ 1.11
COL4A1-204ENST00000543140 TMEM132EQ6IEE7 984 aa21.95■■□□□ 1.1
COL4A1-204ENST00000543140 MYOM1P52179 1685 aa21.95■■□□□ 1.1
COL4A1-204ENST00000543140 TRAK1Q9UPV9 953 aa21.95■■□□□ 1.1
COL4A1-204ENST00000543140 KDM5AP29375 1690 aaKnown RBP21.94■■□□□ 1.1
COL4A1-204ENST00000543140 DIP2BQ9P265 1576 aa21.94■■□□□ 1.1
COL4A1-204ENST00000543140 PIK3C2GO75747 1445 aa21.93■■□□□ 1.1
COL4A1-204ENST00000543140 AMER1Q5JTC6 1135 aaPredicted RBP21.93■■□□□ 1.1
COL4A1-204ENST00000543140 SENP3Q9H4L4 574 aaPredicted RBP21.93■■□□□ 1.1
COL4A1-204ENST00000543140 ERVK-7P63135 1459 aa21.93■■□□□ 1.1
COL4A1-204ENST00000543140 C14orf93Q9H972 538 aaKnown RBP21.92■■□□□ 1.1
COL4A1-204ENST00000543140 IDI1Q13907 227 aa21.91■■□□□ 1.1
COL4A1-204ENST00000543140 RPGRIP1LQ68CZ1 1315 aa21.91■■□□□ 1.1
COL4A1-204ENST00000543140 CENPJQ9HC77 1338 aaPredicted RBP21.89■■□□□ 1.1
COL4A1-204ENST00000543140 PIK3C2BO00750 1634 aa21.89■■□□□ 1.1
COL4A1-204ENST00000543140 SETBP1Q9Y6X0 1596 aa21.89■■□□□ 1.09
COL4A1-204ENST00000543140 PPP2R1AP30153 589 aa21.88■■□□□ 1.09
COL4A1-204ENST00000543140 ZC3H13Q5T200 1668 aaKnown RBP21.88■■□□□ 1.09
COL4A1-204ENST00000543140 ASXL1Q8IXJ9 1541 aa21.87■■□□□ 1.09
COL4A1-204ENST00000543140 ARHGAP31Q2M1Z3 1444 aa21.87■■□□□ 1.09
COL4A1-204ENST00000543140 SLC24A1O60721 1099 aa21.87■■□□□ 1.09
COL4A1-204ENST00000543140 ERICH6BQ5W0A0 696 aa21.86■■□□□ 1.09
COL4A1-204ENST00000543140 PPP4R2Q9NY27 417 aa21.86■■□□□ 1.09
COL4A1-204ENST00000543140 VGFO15240 615 aaPredicted RBP21.85■■□□□ 1.09
COL4A1-204ENST00000543140 MYO3AQ8NEV4 1616 aa21.85■■□□□ 1.09
COL4A1-204ENST00000543140 ADGRB1O14514 1584 aa21.85■■□□□ 1.09
COL4A1-204ENST00000543140 FBXO31Q5XUX0 539 aaPredicted RBP21.85■■□□□ 1.09
COL4A1-204ENST00000543140 ZMYM4Q5VZL5 1548 aa21.85■■□□□ 1.09
COL4A1-204ENST00000543140 NEXMIFQ5QGS0 1516 aa21.84■■□□□ 1.09
COL4A1-204ENST00000543140 MYO5BQ9ULV0 1848 aa21.84■■□□□ 1.09
COL4A1-204ENST00000543140 CARD14Q9BXL6 1004 aa21.83■■□□□ 1.09
COL4A1-204ENST00000543140 SLC52A1Q9NWF4 448 aa21.82■■□□□ 1.08
COL4A1-204ENST00000543140 ADAMTS8Q9UP79 889 aa21.82■■□□□ 1.08
COL4A1-204ENST00000543140 PREX1Q8TCU6 1659 aa21.82■■□□□ 1.08
COL4A1-204ENST00000543140 QRICH2Q9H0J4 1663 aa21.82■■□□□ 1.08
COL4A1-204ENST00000543140 SBNO2Q9Y2G9 1366 aa21.82■■□□□ 1.08
COL4A1-204ENST00000543140 B4GALNT3Q6L9W6 998 aa21.81■■□□□ 1.08
COL4A1-204ENST00000543140 BLMP54132 1417 aaPredicted RBP21.79■■□□□ 1.08
COL4A1-204ENST00000543140 CDCA7LQ96GN5 454 aa21.79■■□□□ 1.08
COL4A1-204ENST00000543140 MLECQ14165 292 aa21.78■■□□□ 1.08
COL4A1-204ENST00000543140 RNF123Q5XPI4 1314 aa21.78■■□□□ 1.08
COL4A1-204ENST00000543140 WDR43Q15061 677 aaKnown RBP eCLIP21.77■■□□□ 1.08
COL4A1-204ENST00000543140 SLC12A5Q9H2X9 1139 aa21.77■■□□□ 1.08
COL4A1-204ENST00000543140 NPC1L1Q9UHC9 1359 aa21.77■■□□□ 1.08
COL4A1-204ENST00000543140 SAFB2Q14151 953 aaKnown RBP eCLIP21.76■■□□□ 1.07
COL4A1-204ENST00000543140 STK26Q9P289 416 aa21.76■■□□□ 1.07
COL4A1-204ENST00000543140 TMEM131LA2VDJ0 1609 aa21.75■■□□□ 1.07
COL4A1-204ENST00000543140 PDE3BQ13370 1112 aa21.74■■□□□ 1.07
COL4A1-204ENST00000543140 STAG3Q9UJ98 1225 aa21.73■■□□□ 1.07
COL4A1-204ENST00000543140 INSRP06213 1382 aa21.73■■□□□ 1.07
COL4A1-204ENST00000543140 ARHGEF28Q8N1W1 1705 aaKnown RBP21.73■■□□□ 1.07
COL4A1-204ENST00000543140 RCAN3Q9UKA8 241 aa21.71■■□□□ 1.07
COL4A1-204ENST00000543140 CLTCQ00610 1675 aaKnown RBP21.71■■□□□ 1.07
COL4A1-204ENST00000543140 KIF13AQ9H1H9 1805 aa21.7■■□□□ 1.06
COL4A1-204ENST00000543140 NSD3Q9BZ95 1437 aa21.7■■□□□ 1.06
COL4A1-204ENST00000543140 ZFYVE9O95405 1425 aa21.7■■□□□ 1.06
COL4A1-204ENST00000543140 EVC2Q86UK5 1308 aa21.69■■□□□ 1.06
COL4A1-204ENST00000543140 TNNT2P45379 298 aaPredicted RBP21.68■■□□□ 1.06
COL4A1-204ENST00000543140 CABP2Q9NPB3 220 aa21.68■■□□□ 1.06
COL4A1-204ENST00000543140 AGLP35573 1532 aa21.67■■□□□ 1.06
COL4A1-204ENST00000543140 REREQ9P2R6 1566 aa21.67■■□□□ 1.06
COL4A1-204ENST00000543140 CCDC146Q8IYE0 955 aa21.67■■□□□ 1.06
COL4A1-204ENST00000543140 TULP4Q9NRJ4 1543 aa21.66■■□□□ 1.06
COL4A1-204ENST00000543140 RRP1P56182 461 aaKnown RBP21.66■■□□□ 1.06
COL4A1-204ENST00000543140 RBM19Q9Y4C8 960 aaKnown RBP21.66■■□□□ 1.06
COL4A1-204ENST00000543140 MORC1Q86VD1 984 aa21.65■■□□□ 1.06
COL4A1-204ENST00000543140 PPP6R1Q9UPN7 881 aa21.64■■□□□ 1.06
COL4A1-204ENST00000543140 PLEKHH1Q9ULM0 1364 aa21.64■■□□□ 1.05
COL4A1-204ENST00000543140 CCDC136Q96JN2 1154 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms