RNA–Protein interactions for RNA: ENST00000542570.5

TOP3A-208, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-208ENST00000542570 CNTLNQ9NXG0 1405 aa13.11□□□□□ -0.31
TOP3A-208ENST00000542570 PSME1Q06323 249 aa13.1□□□□□ -0.31
TOP3A-208ENST00000542570 EXOC6Q8TAG9 804 aa13.1□□□□□ -0.31
TOP3A-208ENST00000542570 PPP2R1AP30153 589 aa13.09□□□□□ -0.31
TOP3A-208ENST00000542570 MYH16Q9H6N6 1097 aa13.09□□□□□ -0.31
TOP3A-208ENST00000542570 PBRM1Q86U86 1689 aa13.09□□□□□ -0.31
TOP3A-208ENST00000542570 HSP90AA1P07900 732 aaKnown RBP13.08□□□□□ -0.31
TOP3A-208ENST00000542570 NLRP6P59044 892 aa13.08□□□□□ -0.31
TOP3A-208ENST00000542570 ZNF428Q96B54 188 aa13.08□□□□□ -0.31
TOP3A-208ENST00000542570 SMC4Q9NTJ3 1288 aa13.08□□□□□ -0.31
TOP3A-208ENST00000542570 ESCO1Q5FWF5 840 aa13.07□□□□□ -0.32
TOP3A-208ENST00000542570 ITPRIPQ8IWB1 547 aa13.07□□□□□ -0.32
TOP3A-208ENST00000542570 CCDC9Q9Y3X0 531 aaKnown RBP13.07□□□□□ -0.32
TOP3A-208ENST00000542570 DHX29Q7Z478 1369 aaKnown RBP13.07□□□□□ -0.32
TOP3A-208ENST00000542570 RRS1Q15050 365 aaKnown RBP13.07□□□□□ -0.32
TOP3A-208ENST00000542570 SLC4A10Q6U841 1118 aa13.07□□□□□ -0.32
TOP3A-208ENST00000542570 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.06□□□□□ -0.32
TOP3A-208ENST00000542570 USP35Q9P2H5 1018 aa13.06□□□□□ -0.32
TOP3A-208ENST00000542570 ERCC6L2Q5T890 1561 aa13.05□□□□□ -0.32
TOP3A-208ENST00000542570 DIAPH1O60610 1272 aaKnown RBP13.05□□□□□ -0.32
TOP3A-208ENST00000542570 RIPK4P57078 832 aa13.05□□□□□ -0.32
TOP3A-208ENST00000542570 PNISRQ8TF01 805 aaKnown RBP13.05□□□□□ -0.32
TOP3A-208ENST00000542570 UPF2Q9HAU5 1272 aaKnown RBP13.05□□□□□ -0.32
TOP3A-208ENST00000542570 COG6Q9Y2V7 657 aa13.05□□□□□ -0.32
TOP3A-208ENST00000542570 DENND4BO75064 1496 aaPredicted RBP13.05□□□□□ -0.32
TOP3A-208ENST00000542570 PROSER2Q86WR7 435 aaPredicted RBP13.04□□□□□ -0.32
TOP3A-208ENST00000542570 RPRD2Q5VT52 1461 aaKnown RBP13.04□□□□□ -0.32
TOP3A-208ENST00000542570 THEMISQ8N1K5 641 aaPredicted RBP13.03□□□□□ -0.32
TOP3A-208ENST00000542570 TCP11L2Q8N4U5 519 aa13.03□□□□□ -0.32
TOP3A-208ENST00000542570 ZBED9Q6R2W3 1325 aa13.03□□□□□ -0.32
TOP3A-208ENST00000542570 WDR7Q9Y4E6 1490 aa13.03□□□□□ -0.32
TOP3A-208ENST00000542570 NOS1P29475 1434 aa13.03□□□□□ -0.32
TOP3A-208ENST00000542570 ABTB2Q8N961 1025 aa13.03□□□□□ -0.32
TOP3A-208ENST00000542570 PNNQ9H307 717 aaKnown RBP13.03□□□□□ -0.32
TOP3A-208ENST00000542570 CRBNQ96SW2 442 aa13.02□□□□□ -0.32
TOP3A-208ENST00000542570 NGEFQ8N5V2 710 aa13.02□□□□□ -0.33
TOP3A-208ENST00000542570 NCKAP5LQ9HCH0 1330 aa13.02□□□□□ -0.33
TOP3A-208ENST00000542570 CFAP65Q6ZU64 1925 aaKnown RBP13.01□□□□□ -0.33
TOP3A-208ENST00000542570 TPRNQ4KMQ1 711 aa13.01□□□□□ -0.33
TOP3A-208ENST00000542570 DISP3Q9P2K9 1392 aa13.01□□□□□ -0.33
TOP3A-208ENST00000542570 TSR2Q969E8 191 aaKnown RBP13□□□□□ -0.33
TOP3A-208ENST00000542570 RBM19Q9Y4C8 960 aaKnown RBP13□□□□□ -0.33
TOP3A-208ENST00000542570 SPRYD3Q8NCJ5 442 aa12.99□□□□□ -0.33
TOP3A-208ENST00000542570 STAC3Q96MF2 364 aa12.99□□□□□ -0.33
TOP3A-208ENST00000542570 TAOK2Q9UL54 1235 aa12.99□□□□□ -0.33
TOP3A-208ENST00000542570 EIF2S2P20042 333 aaKnown RBP12.99□□□□□ -0.33
TOP3A-208ENST00000542570 THUMPD2Q9BTF0 503 aaKnown RBP12.99□□□□□ -0.33
TOP3A-208ENST00000542570 ABCC2Q92887 1545 aa12.99□□□□□ -0.33
TOP3A-208ENST00000542570 PRKAR2BP31323 418 aa12.98□□□□□ -0.33
TOP3A-208ENST00000542570 NME9Q86XW9 330 aa12.98□□□□□ -0.33
TOP3A-208ENST00000542570 NUDT16Q96DE0 195 aaKnown RBP12.98□□□□□ -0.33
TOP3A-208ENST00000542570 KDM5BQ9UGL1 1544 aa12.98□□□□□ -0.33
TOP3A-208ENST00000542570 SAMD9Q5K651 1589 aa12.98□□□□□ -0.33
TOP3A-208ENST00000542570 PANK1Q8TE04 598 aa12.98□□□□□ -0.33
TOP3A-208ENST00000542570 FOXO3O43524 673 aa12.97□□□□□ -0.33
TOP3A-208ENST00000542570 ATF3P18847 181 aa12.97□□□□□ -0.33
TOP3A-208ENST00000542570 AMOTL2Q9Y2J4 779 aa12.97□□□□□ -0.33
TOP3A-208ENST00000542570 ANKLE2Q86XL3 938 aa12.97□□□□□ -0.33
TOP3A-208ENST00000542570 TSHZ2Q9NRE2 1034 aa12.97□□□□□ -0.33
TOP3A-208ENST00000542570 RRP1P56182 461 aaKnown RBP12.97□□□□□ -0.33
TOP3A-208ENST00000542570 OS9Q13438 667 aaPredicted RBP12.97□□□□□ -0.33
TOP3A-208ENST00000542570 HSPA2P54652 639 aa12.96□□□□□ -0.33
TOP3A-208ENST00000542570 BCAR3O75815 825 aa12.96□□□□□ -0.33
TOP3A-208ENST00000542570 ZC3H6P61129 1189 aaKnown RBP12.95□□□□□ -0.34
TOP3A-208ENST00000542570 ZRANB1Q9UGI0 708 aa12.95□□□□□ -0.34
TOP3A-208ENST00000542570 SULT6B1Q6IMI4 303 aa12.95□□□□□ -0.34
TOP3A-208ENST00000542570 NLRP2Q9NX02 1062 aa12.95□□□□□ -0.34
TOP3A-208ENST00000542570 SKAP1Q86WV1 359 aa12.95□□□□□ -0.34
TOP3A-208ENST00000542570 RUNDC1Q96C34 613 aa12.95□□□□□ -0.34
TOP3A-208ENST00000542570 A2MP01023 1474 aa12.95□□□□□ -0.34
TOP3A-208ENST00000542570 C14orf93Q9H972 538 aaKnown RBP12.94□□□□□ -0.34
TOP3A-208ENST00000542570 EMILIN1Q9Y6C2 1016 aa12.94□□□□□ -0.34
TOP3A-208ENST00000542570 RTEL1-TNFRSF6BF6WH68 1400 aa12.94□□□□□ -0.34
TOP3A-208ENST00000542570 TCOF1Q13428 1488 aaKnown RBP12.94□□□□□ -0.34
TOP3A-208ENST00000542570 PDE3BQ13370 1112 aa12.94□□□□□ -0.34
TOP3A-208ENST00000542570 CCDC61Q9Y6R9 512 aa12.94□□□□□ -0.34
TOP3A-208ENST00000542570 PZPP20742 1482 aa12.94□□□□□ -0.34
TOP3A-208ENST00000542570 DCTN1Q14203 1278 aa12.94□□□□□ -0.34
TOP3A-208ENST00000542570 CFAP43Q8NDM7 1665 aa12.93□□□□□ -0.34
TOP3A-208ENST00000542570 SYTL4Q96C24 671 aaPredicted RBP12.93□□□□□ -0.34
TOP3A-208ENST00000542570 NSD3Q9BZ95 1437 aa12.93□□□□□ -0.34
TOP3A-208ENST00000542570 E9PSI1 815 aa12.93□□□□□ -0.34
TOP3A-208ENST00000542570 EVA1CP58658 441 aa12.92□□□□□ -0.34
TOP3A-208ENST00000542570 TESK2Q96S53 571 aa12.92□□□□□ -0.34
TOP3A-208ENST00000542570 MIS18AQ9NYP9 233 aa12.92□□□□□ -0.34
TOP3A-208ENST00000542570 KDM6BO15054 1643 aa12.92□□□□□ -0.34
TOP3A-208ENST00000542570 FAM135AQ9P2D6 1515 aa12.92□□□□□ -0.34
TOP3A-208ENST00000542570 STK31Q9BXU1 1019 aa12.91□□□□□ -0.34
TOP3A-208ENST00000542570 RPGRIP1LQ68CZ1 1315 aa12.91□□□□□ -0.34
TOP3A-208ENST00000542570 NPHP1O15259 732 aa12.91□□□□□ -0.34
TOP3A-208ENST00000542570 IPO8O15397 1037 aaKnown RBP12.91□□□□□ -0.34
TOP3A-208ENST00000542570 BRD4O60885 1362 aaPredicted RBP12.91□□□□□ -0.34
TOP3A-208ENST00000542570 USHBP1Q8N6Y0 703 aa12.91□□□□□ -0.34
TOP3A-208ENST00000542570 EXOSC9Q06265 439 aaKnown RBP12.9□□□□□ -0.34
TOP3A-208ENST00000542570 TEFQ10587 303 aa12.9□□□□□ -0.34
TOP3A-208ENST00000542570 STRN4Q9NRL3 753 aa12.9□□□□□ -0.34
TOP3A-208ENST00000542570 YEATS2Q9ULM3 1422 aa12.88□□□□□ -0.35
TOP3A-208ENST00000542570 ZNF518AQ6AHZ1 1483 aa12.88□□□□□ -0.35
TOP3A-208ENST00000542570 CHMP3Q9Y3E7 222 aa12.88□□□□□ -0.35
TOP3A-208ENST00000542570 SLC4A3P48751 1232 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms