RNA–Protein interactions for RNA: ENST00000541576.5

THBS3-210, Transcript of thrombospondin 3, humanhuman

TSL 1 (best) BASIC

Gene THBS3, Length 3,200 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3-210ENST00000541576 IFT172Q9UG01 1749 aa12.17□□□□□ -0.46
THBS3-210ENST00000541576 RPGRIP1LQ68CZ1 1315 aa12.17□□□□□ -0.46
THBS3-210ENST00000541576 NBPF1Q3BBV0 1214 aa12.17□□□□□ -0.46
THBS3-210ENST00000541576 C11orf95C9JLR9 678 aaPredicted RBP12.16□□□□□ -0.46
THBS3-210ENST00000541576 ADGRF5Q8IZF2 1346 aa12.15□□□□□ -0.46
THBS3-210ENST00000541576 PPLO60437 1756 aa12.15□□□□□ -0.47
THBS3-210ENST00000541576 LAMC1P11047 1609 aa12.14□□□□□ -0.47
THBS3-210ENST00000541576 WASHC2AQ641Q2 1341 aa12.14□□□□□ -0.47
THBS3-210ENST00000541576 TMEM131LA2VDJ0 1609 aa12.14□□□□□ -0.47
THBS3-210ENST00000541576 NRXN1Q9ULB1 1477 aa12.14□□□□□ -0.47
THBS3-210ENST00000541576 STAG3Q9UJ98 1225 aa12.13□□□□□ -0.47
THBS3-210ENST00000541576 FER1L4A9Z1Z3 1794 aa12.13□□□□□ -0.47
THBS3-210ENST00000541576 NEXMIFQ5QGS0 1516 aa12.12□□□□□ -0.47
THBS3-210ENST00000541576 KIAA1210Q9ULL0 1709 aa12.12□□□□□ -0.47
THBS3-210ENST00000541576 MYO5BQ9ULV0 1848 aa12.12□□□□□ -0.47
THBS3-210ENST00000541576 ST20-MTHFSA0A0A6YYL1 179 aa12.12□□□□□ -0.47
THBS3-210ENST00000541576 TNRQ92752 1358 aa12.12□□□□□ -0.47
THBS3-210ENST00000541576 VGFO15240 615 aaPredicted RBP12.11□□□□□ -0.47
THBS3-210ENST00000541576 CFAP70Q5T0N1 1121 aa12.11□□□□□ -0.47
THBS3-210ENST00000541576 PIK3C2GO75747 1445 aa12.11□□□□□ -0.47
THBS3-210ENST00000541576 NUTM2DQ5VT03 806 aaPredicted RBP12.1□□□□□ -0.47
THBS3-210ENST00000541576 CCDC7Q96M83 1385 aa12.1□□□□□ -0.47
THBS3-210ENST00000541576 CEBPAP49715 358 aaPredicted RBP12.09□□□□□ -0.47
THBS3-210ENST00000541576 A2ML1A8K2U0 1454 aa12.09□□□□□ -0.47
THBS3-210ENST00000541576 ZFYVE9O95405 1425 aa12.09□□□□□ -0.47
THBS3-210ENST00000541576 C3P01024 1663 aa12.09□□□□□ -0.47
THBS3-210ENST00000541576 KIF7Q2M1P5 1343 aa12.08□□□□□ -0.48
THBS3-210ENST00000541576 SCAF11Q99590 1463 aaKnown RBP12.08□□□□□ -0.48
THBS3-210ENST00000541576 POLR1AO95602 1720 aaPredicted RBP12.08□□□□□ -0.48
THBS3-210ENST00000541576 C14orf93Q9H972 538 aaKnown RBP12.08□□□□□ -0.48
THBS3-210ENST00000541576 IQGAP1P46940 1657 aa12.07□□□□□ -0.48
THBS3-210ENST00000541576 PLPPR3Q6T4P5 718 aa12.07□□□□□ -0.48
THBS3-210ENST00000541576 SETBP1Q9Y6X0 1596 aa12.06□□□□□ -0.48
THBS3-210ENST00000541576 EIF3AQ14152 1382 aaKnown RBP12.05□□□□□ -0.48
THBS3-210ENST00000541576 NLRP1Q9C000 1473 aa12.05□□□□□ -0.48
THBS3-210ENST00000541576 RIMS2Q9UQ26 1411 aa12.05□□□□□ -0.48
THBS3-210ENST00000541576 KDM5AP29375 1690 aaKnown RBP12.04□□□□□ -0.48
THBS3-210ENST00000541576 RIMS1Q86UR5 1692 aaKnown RBP12.04□□□□□ -0.48
THBS3-210ENST00000541576 TESK2Q96S53 571 aa12.04□□□□□ -0.48
THBS3-210ENST00000541576 POLR3GLQ9BT43 218 aa12.04□□□□□ -0.48
THBS3-210ENST00000541576 ADAMTSL3P82987 1691 aa12.04□□□□□ -0.48
THBS3-210ENST00000541576 ADGRB1O14514 1584 aa12.03□□□□□ -0.48
THBS3-210ENST00000541576 UBR1Q8IWV7 1749 aa12.03□□□□□ -0.48
THBS3-210ENST00000541576 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.03□□□□□ -0.48
THBS3-210ENST00000541576 TMEM132EQ6IEE7 984 aa12.02□□□□□ -0.48
THBS3-210ENST00000541576 HDGFP51858 240 aaKnown RBP12.02□□□□□ -0.49
THBS3-210ENST00000541576 SENP3Q9H4L4 574 aaPredicted RBP12.02□□□□□ -0.49
THBS3-210ENST00000541576 TMF1P82094 1093 aa12.01□□□□□ -0.49
THBS3-210ENST00000541576 TMEM2Q9UHN6 1383 aa12.01□□□□□ -0.49
THBS3-210ENST00000541576 TRAK1Q9UPV9 953 aa12□□□□□ -0.49
THBS3-210ENST00000541576 DISP3Q9P2K9 1392 aa12□□□□□ -0.49
THBS3-210ENST00000541576 ANP32CO43423 234 aa11.99□□□□□ -0.49
THBS3-210ENST00000541576 MYO3AQ8NEV4 1616 aa11.99□□□□□ -0.49
THBS3-210ENST00000541576 ALKQ9UM73 1620 aa11.99□□□□□ -0.49
THBS3-210ENST00000541576 CENPJQ9HC77 1338 aaPredicted RBP11.98□□□□□ -0.49
THBS3-210ENST00000541576 SLC24A1O60721 1099 aa11.98□□□□□ -0.49
THBS3-210ENST00000541576 ASXL1Q8IXJ9 1541 aa11.98□□□□□ -0.49
THBS3-210ENST00000541576 BCANQ96GW7 911 aa11.97□□□□□ -0.49
THBS3-210ENST00000541576 THEMISQ8N1K5 641 aaPredicted RBP11.97□□□□□ -0.49
THBS3-210ENST00000541576 CDCA8Q53HL2 280 aa11.96□□□□□ -0.49
THBS3-210ENST00000541576 SBNO2Q9Y2G9 1366 aa11.96□□□□□ -0.5
THBS3-210ENST00000541576 STK26Q9P289 416 aa11.96□□□□□ -0.5
THBS3-210ENST00000541576 YTHDC2Q9H6S0 1430 aaKnown RBP11.95□□□□□ -0.5
THBS3-210ENST00000541576 SLIT1O75093 1534 aa11.95□□□□□ -0.5
THBS3-210ENST00000541576 SETD1BQ9UPS6 1966 aaKnown RBP11.95□□□□□ -0.5
THBS3-210ENST00000541576 EID1Q9Y6B2 187 aa11.95□□□□□ -0.5
THBS3-210ENST00000541576 PTPRMP28827 1452 aa11.95□□□□□ -0.5
THBS3-210ENST00000541576 CEP170BQ9Y4F5 1589 aaPredicted RBP11.95□□□□□ -0.5
THBS3-210ENST00000541576 NRXN3Q9Y4C0 1643 aa11.95□□□□□ -0.5
THBS3-210ENST00000541576 TXNDC2Q86VQ3 553 aa11.95□□□□□ -0.5
THBS3-210ENST00000541576 ARHGEF28Q8N1W1 1705 aaKnown RBP11.95□□□□□ -0.5
THBS3-210ENST00000541576 ARHGAP23Q9P227 1491 aa11.94□□□□□ -0.5
THBS3-210ENST00000541576 LTKP29376 864 aa11.94□□□□□ -0.5
THBS3-210ENST00000541576 SETD1AO15047 1707 aaKnown RBP11.94□□□□□ -0.5
THBS3-210ENST00000541576 BCL11AQ9H165 835 aa11.94□□□□□ -0.5
THBS3-210ENST00000541576 PLEKHG1Q9ULL1 1385 aa11.93□□□□□ -0.5
THBS3-210ENST00000541576 QRICH2Q9H0J4 1663 aa11.93□□□□□ -0.5
THBS3-210ENST00000541576 LRPPRCP42704 1394 aaKnown RBP11.92□□□□□ -0.5
THBS3-210ENST00000541576 CCER2I3L3R5 266 aa11.91□□□□□ -0.5
THBS3-210ENST00000541576 ZNF142P52746 1687 aaPredicted RBP11.91□□□□□ -0.5
THBS3-210ENST00000541576 METP08581 1390 aa11.91□□□□□ -0.5
THBS3-210ENST00000541576 PRKRIP1Q9H875 184 aaPredicted RBP11.91□□□□□ -0.5
THBS3-210ENST00000541576 ADAMTS13Q76LX8 1427 aa11.91□□□□□ -0.5
THBS3-210ENST00000541576 POGKQ9P215 609 aa11.9□□□□□ -0.5
THBS3-210ENST00000541576 SAFB2Q14151 953 aaKnown RBP eCLIP11.9□□□□□ -0.5
THBS3-210ENST00000541576 PRAM1Q96QH2 718 aa11.9□□□□□ -0.5
THBS3-210ENST00000541576 ABCC11Q96J66 1382 aa11.9□□□□□ -0.51
THBS3-210ENST00000541576 DLC1Q96QB1 1528 aa11.89□□□□□ -0.51
THBS3-210ENST00000541576 CNGB1Q14028 1251 aaPredicted RBP11.89□□□□□ -0.51
THBS3-210ENST00000541576 PANK3Q9H999 370 aa11.89□□□□□ -0.51
THBS3-210ENST00000541576 EVC2Q86UK5 1308 aa11.88□□□□□ -0.51
THBS3-210ENST00000541576 PER1O15534 1290 aaPredicted RBP11.88□□□□□ -0.51
THBS3-210ENST00000541576 SLC26A8Q96RN1 970 aa11.87□□□□□ -0.51
THBS3-210ENST00000541576 MED14O60244 1454 aa11.87□□□□□ -0.51
THBS3-210ENST00000541576 CCDC184Q52MB2 194 aa11.87□□□□□ -0.51
THBS3-210ENST00000541576 ANKLE2Q86XL3 938 aa11.86□□□□□ -0.51
THBS3-210ENST00000541576 TULP4Q9NRJ4 1543 aa11.86□□□□□ -0.51
THBS3-210ENST00000541576 MYOM1P52179 1685 aa11.86□□□□□ -0.51
THBS3-210ENST00000541576 MINK1Q8N4C8 1332 aaPredicted RBP11.86□□□□□ -0.51
THBS3-210ENST00000541576 TECPR2O15040 1411 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms