RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 STAC3Q96MF2 364 aa23.43■■□□□ 1.34
SPIDR-227ENST00000541342 IQGAP1P46940 1657 aa23.42■■□□□ 1.34
SPIDR-227ENST00000541342 MYOM2P54296 1465 aa23.4■■□□□ 1.34
SPIDR-227ENST00000541342 NOS1P29475 1434 aa23.4■■□□□ 1.34
SPIDR-227ENST00000541342 KIAA1210Q9ULL0 1709 aa23.4■■□□□ 1.34
SPIDR-227ENST00000541342 COL17A1Q9UMD9 1497 aaPredicted RBP23.39■■□□□ 1.34
SPIDR-227ENST00000541342 SYNMO15061 1565 aa23.39■■□□□ 1.34
SPIDR-227ENST00000541342 TESK2Q96S53 571 aa23.39■■□□□ 1.34
SPIDR-227ENST00000541342 PIK3C2BO00750 1634 aa23.38■■□□□ 1.33
SPIDR-227ENST00000541342 FAM9BQ8IZU0 186 aa23.38■■□□□ 1.33
SPIDR-227ENST00000541342 ARHGAP31Q2M1Z3 1444 aa23.38■■□□□ 1.33
SPIDR-227ENST00000541342 REREQ9P2R6 1566 aa23.37■■□□□ 1.33
SPIDR-227ENST00000541342 MRS2Q9HD23 443 aa23.37■■□□□ 1.33
SPIDR-227ENST00000541342 ADGRF5Q8IZF2 1346 aa23.36■■□□□ 1.33
SPIDR-227ENST00000541342 ZBED9Q6R2W3 1325 aa23.36■■□□□ 1.33
SPIDR-227ENST00000541342 ERICH6BQ5W0A0 696 aa23.35■■□□□ 1.33
SPIDR-227ENST00000541342 PPLO60437 1756 aa23.35■■□□□ 1.33
SPIDR-227ENST00000541342 NRXN1Q9ULB1 1477 aa23.35■■□□□ 1.33
SPIDR-227ENST00000541342 DISP3Q9P2K9 1392 aa23.35■■□□□ 1.33
SPIDR-227ENST00000541342 FANCIQ9NVI1 1328 aa23.33■■□□□ 1.33
SPIDR-227ENST00000541342 CHGAP10645 457 aaKnown RBP23.32■■□□□ 1.32
SPIDR-227ENST00000541342 PPP4R2Q9NY27 417 aa23.32■■□□□ 1.32
SPIDR-227ENST00000541342 SCAF11Q99590 1463 aaKnown RBP23.32■■□□□ 1.32
SPIDR-227ENST00000541342 AGLP35573 1532 aa23.31■■□□□ 1.32
SPIDR-227ENST00000541342 PREX1Q8TCU6 1659 aa23.31■■□□□ 1.32
SPIDR-227ENST00000541342 CFAP70Q5T0N1 1121 aa23.3■■□□□ 1.32
SPIDR-227ENST00000541342 ARHGEF40Q8TER5 1519 aa23.29■■□□□ 1.32
SPIDR-227ENST00000541342 PIK3C2GO75747 1445 aa23.24■■□□□ 1.31
SPIDR-227ENST00000541342 TMF1P82094 1093 aa23.24■■□□□ 1.31
SPIDR-227ENST00000541342 CNGB1Q14028 1251 aaPredicted RBP23.24■■□□□ 1.31
SPIDR-227ENST00000541342 CLTCQ00610 1675 aaKnown RBP23.24■■□□□ 1.31
SPIDR-227ENST00000541342 MYO5BQ9ULV0 1848 aa23.24■■□□□ 1.31
SPIDR-227ENST00000541342 IDI1Q13907 227 aa23.23■■□□□ 1.31
SPIDR-227ENST00000541342 NEXMIFQ5QGS0 1516 aa23.23■■□□□ 1.31
SPIDR-227ENST00000541342 B4GALNT3Q6L9W6 998 aa23.22■■□□□ 1.31
SPIDR-227ENST00000541342 RPGRIP1LQ68CZ1 1315 aa23.22■■□□□ 1.31
SPIDR-227ENST00000541342 SETBP1Q9Y6X0 1596 aa23.21■■□□□ 1.31
SPIDR-227ENST00000541342 FBXO31Q5XUX0 539 aaPredicted RBP23.2■■□□□ 1.3
SPIDR-227ENST00000541342 TMEM131LA2VDJ0 1609 aa23.19■■□□□ 1.3
SPIDR-227ENST00000541342 ERVK-7P63135 1459 aa23.19■■□□□ 1.3
SPIDR-227ENST00000541342 SLC52A1Q9NWF4 448 aa23.19■■□□□ 1.3
SPIDR-227ENST00000541342 EIF3AQ14152 1382 aaKnown RBP23.19■■□□□ 1.3
SPIDR-227ENST00000541342 PPP6R1Q9UPN7 881 aa23.17■■□□□ 1.3
SPIDR-227ENST00000541342 ADGRB1O14514 1584 aa23.17■■□□□ 1.3
SPIDR-227ENST00000541342 PER1O15534 1290 aaPredicted RBP23.17■■□□□ 1.3
SPIDR-227ENST00000541342 SMG6Q86US8 1419 aaKnown RBP23.17■■□□□ 1.3
SPIDR-227ENST00000541342 C14orf93Q9H972 538 aaKnown RBP23.16■■□□□ 1.3
SPIDR-227ENST00000541342 MYO3AQ8NEV4 1616 aa23.16■■□□□ 1.3
SPIDR-227ENST00000541342 NUTM2DQ5VT03 806 aaPredicted RBP23.16■■□□□ 1.3
SPIDR-227ENST00000541342 MLECQ14165 292 aa23.15■■□□□ 1.3
SPIDR-227ENST00000541342 PANK3Q9H999 370 aa23.13■■□□□ 1.29
SPIDR-227ENST00000541342 MYOM1P52179 1685 aa23.13■■□□□ 1.29
SPIDR-227ENST00000541342 BCL11AQ9H165 835 aa23.11■■□□□ 1.29
SPIDR-227ENST00000541342 SPATA31D1Q6ZQQ2 1576 aa23.11■■□□□ 1.29
SPIDR-227ENST00000541342 VGFO15240 615 aaPredicted RBP23.1■■□□□ 1.29
SPIDR-227ENST00000541342 KTN1Q86UP2 1357 aaKnown RBP23.1■■□□□ 1.29
SPIDR-227ENST00000541342 KDM5AP29375 1690 aaKnown RBP23.1■■□□□ 1.29
SPIDR-227ENST00000541342 RNF123Q5XPI4 1314 aa23.1■■□□□ 1.29
SPIDR-227ENST00000541342 TMEM132EQ6IEE7 984 aa23.09■■□□□ 1.29
SPIDR-227ENST00000541342 ZFYVE9O95405 1425 aa23.09■■□□□ 1.29
SPIDR-227ENST00000541342 RALBP1Q15311 655 aa23.08■■□□□ 1.29
SPIDR-227ENST00000541342 PARD3Q8TEW0 1356 aa23.08■■□□□ 1.29
SPIDR-227ENST00000541342 MYBBP1AQ9BQG0 1328 aaKnown RBP23.06■■□□□ 1.28
SPIDR-227ENST00000541342 CDCA8Q53HL2 280 aa23.06■■□□□ 1.28
SPIDR-227ENST00000541342 TRAK1Q9UPV9 953 aa23.06■■□□□ 1.28
SPIDR-227ENST00000541342 QRICH2Q9H0J4 1663 aa23.06■■□□□ 1.28
SPIDR-227ENST00000541342 NUDCQ9Y266 331 aa23.06■■□□□ 1.28
SPIDR-227ENST00000541342 SBNO2Q9Y2G9 1366 aa23.04■■□□□ 1.28
SPIDR-227ENST00000541342 PNISRQ8TF01 805 aaKnown RBP23.04■■□□□ 1.28
SPIDR-227ENST00000541342 CENPJQ9HC77 1338 aaPredicted RBP23.03■■□□□ 1.28
SPIDR-227ENST00000541342 ARHGEF28Q8N1W1 1705 aaKnown RBP23.03■■□□□ 1.28
SPIDR-227ENST00000541342 ASXL1Q8IXJ9 1541 aa23.03■■□□□ 1.28
SPIDR-227ENST00000541342 ZMYM3Q14202 1370 aa23.01■■□□□ 1.27
SPIDR-227ENST00000541342 SENP3-EIF4A1A0A087X0R7 540 aa23.01■■□□□ 1.27
SPIDR-227ENST00000541342 CC2D1BQ5T0F9 858 aaKnown RBP23.01■■□□□ 1.27
SPIDR-227ENST00000541342 BRD4O60885 1362 aaPredicted RBP23.01■■□□□ 1.27
SPIDR-227ENST00000541342 A2ML1A8K2U0 1454 aa23■■□□□ 1.27
SPIDR-227ENST00000541342 TMC1Q8TDI8 760 aa23■■□□□ 1.27
SPIDR-227ENST00000541342 SENP3Q9H4L4 574 aaPredicted RBP23■■□□□ 1.27
SPIDR-227ENST00000541342 SLC24A1O60721 1099 aa22.99■■□□□ 1.27
SPIDR-227ENST00000541342 LRPPRCP42704 1394 aaKnown RBP22.97■■□□□ 1.27
SPIDR-227ENST00000541342 STAG3Q9UJ98 1225 aa22.97■■□□□ 1.27
SPIDR-227ENST00000541342 ERICH6Q7L0X2 663 aa22.96■■□□□ 1.27
SPIDR-227ENST00000541342 ESF1Q9H501 851 aaKnown RBP22.96■■□□□ 1.27
SPIDR-227ENST00000541342 NLRP13Q86W25 1043 aa22.95■■□□□ 1.26
SPIDR-227ENST00000541342 AMER1Q5JTC6 1135 aaPredicted RBP22.94■■□□□ 1.26
SPIDR-227ENST00000541342 ALKQ9UM73 1620 aa22.94■■□□□ 1.26
SPIDR-227ENST00000541342 KNSTRNQ9Y448 316 aa22.93■■□□□ 1.26
SPIDR-227ENST00000541342 TRHP20396 242 aaPredicted RBP22.93■■□□□ 1.26
SPIDR-227ENST00000541342 RIMS2Q9UQ26 1411 aa22.91■■□□□ 1.26
SPIDR-227ENST00000541342 TULP4Q9NRJ4 1543 aa22.9■■□□□ 1.26
SPIDR-227ENST00000541342 SETD1AO15047 1707 aaKnown RBP22.89■■□□□ 1.25
SPIDR-227ENST00000541342 STK26Q9P289 416 aa22.88■■□□□ 1.25
SPIDR-227ENST00000541342 PTPRMP28827 1452 aa22.88■■□□□ 1.25
SPIDR-227ENST00000541342 CCDC136Q96JN2 1154 aa22.88■■□□□ 1.25
SPIDR-227ENST00000541342 YTHDC2Q9H6S0 1430 aaKnown RBP22.87■■□□□ 1.25
SPIDR-227ENST00000541342 CARD14Q9BXL6 1004 aa22.87■■□□□ 1.25
SPIDR-227ENST00000541342 TNRQ92752 1358 aa22.87■■□□□ 1.25
SPIDR-227ENST00000541342 NPC1L1Q9UHC9 1359 aa22.86■■□□□ 1.25
SPIDR-227ENST00000541342 NRXN3Q9Y4C0 1643 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms