RNA–Protein interactions for RNA: ENST00000541280.1

SUDS3-202, Transcript of SDS3 homolog, SIN3A corepressor complex component, humanhuman

TSL 5

Gene SUDS3, Length 659 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SUDS3-202ENST00000541280 APLP1P51693 650 aa11.7□□□□□ -0.54
SUDS3-202ENST00000541280 FAM161AQ3B820 660 aa11.7□□□□□ -0.54
SUDS3-202ENST00000541280 GPIHBP1Q8IV16 184 aa11.7□□□□□ -0.54
SUDS3-202ENST00000541280 RNF40O75150 1001 aa11.69□□□□□ -0.54
SUDS3-202ENST00000541280 TJAP1Q5JTD0 557 aa11.69□□□□□ -0.54
SUDS3-202ENST00000541280 FECHP22830 423 aa11.68□□□□□ -0.54
SUDS3-202ENST00000541280 METTL3Q86U44 580 aaKnown RBP11.68□□□□□ -0.54
SUDS3-202ENST00000541280 TULP1O00294 542 aaPredicted RBP11.66□□□□□ -0.54
SUDS3-202ENST00000541280 MTRQ99707 1265 aa11.65□□□□□ -0.54
SUDS3-202ENST00000541280 PRR14Q9BWN1 585 aa11.65□□□□□ -0.54
SUDS3-202ENST00000541280 IL21Q9HBE4 155 aa11.65□□□□□ -0.54
SUDS3-202ENST00000541280 SLC10A3P09131 477 aa11.59□□□□□ -0.55
SUDS3-202ENST00000541280 ACTN4O43707 911 aaKnown RBP11.58□□□□□ -0.56
SUDS3-202ENST00000541280 MAP2K5Q13163 448 aa11.57□□□□□ -0.56
SUDS3-202ENST00000541280 KMT5BQ4FZB7 885 aa11.57□□□□□ -0.56
SUDS3-202ENST00000541280 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.57□□□□□ -0.56
SUDS3-202ENST00000541280 DAXXQ9UER7 740 aaPredicted RBP11.57□□□□□ -0.56
SUDS3-202ENST00000541280 PHOX2BQ99453 314 aa11.56□□□□□ -0.56
SUDS3-202ENST00000541280 CFHP08603 1231 aa11.55□□□□□ -0.56
SUDS3-202ENST00000541280 ZNF516Q92618 1163 aa11.55□□□□□ -0.56
SUDS3-202ENST00000541280 PCDHB3Q9Y5E6 796 aa11.55□□□□□ -0.56
SUDS3-202ENST00000541280 ZPR1O75312 459 aa11.52□□□□□ -0.57
SUDS3-202ENST00000541280 COPS2P61201 443 aa11.52□□□□□ -0.57
SUDS3-202ENST00000541280 RSPH4AQ5TD94 716 aa11.52□□□□□ -0.57
SUDS3-202ENST00000541280 IRF6O14896 467 aa11.51□□□□□ -0.57
SUDS3-202ENST00000541280 BLOC1S3Q6QNY0 202 aa11.51□□□□□ -0.57
SUDS3-202ENST00000541280 MINK1Q8N4C8 1332 aaPredicted RBP11.51□□□□□ -0.57
SUDS3-202ENST00000541280 LMOD2Q6P5Q4 547 aa11.5□□□□□ -0.57
SUDS3-202ENST00000541280 PPP1R18Q6NYC8 613 aa11.48□□□□□ -0.57
SUDS3-202ENST00000541280 SULF1Q8IWU6 871 aa11.48□□□□□ -0.57
SUDS3-202ENST00000541280 NKX2-3Q8TAU0 364 aa11.48□□□□□ -0.57
SUDS3-202ENST00000541280 NLRP7Q8WX94 980 aa11.47□□□□□ -0.57
SUDS3-202ENST00000541280 NACADO15069 1562 aa11.46□□□□□ -0.57
SUDS3-202ENST00000541280 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.46□□□□□ -0.57
SUDS3-202ENST00000541280 RB1CC1Q8TDY2 1594 aa11.45□□□□□ -0.58
SUDS3-202ENST00000541280 TMUB1Q9BVT8 246 aa11.45□□□□□ -0.58
SUDS3-202ENST00000541280 DDX11L8A8MPP1 907 aa11.44□□□□□ -0.58
SUDS3-202ENST00000541280 RDH13Q8NBN7 331 aa11.44□□□□□ -0.58
SUDS3-202ENST00000541280 CCDC102AQ96A19 550 aa11.44□□□□□ -0.58
SUDS3-202ENST00000541280 NR1I2O75469 434 aa11.43□□□□□ -0.58
SUDS3-202ENST00000541280 GGCXP38435 758 aa11.43□□□□□ -0.58
SUDS3-202ENST00000541280 GCGRP47871 477 aa11.43□□□□□ -0.58
SUDS3-202ENST00000541280 MYO15BQ96JP2 1530 aa11.41□□□□□ -0.58
SUDS3-202ENST00000541280 ZMYND10O75800 440 aa11.41□□□□□ -0.58
SUDS3-202ENST00000541280 TLL1O43897 1013 aa11.4□□□□□ -0.58
SUDS3-202ENST00000541280 BARGINQ6ZT62 677 aa11.4□□□□□ -0.58
SUDS3-202ENST00000541280 ADH1BP00325 375 aa11.39□□□□□ -0.59
SUDS3-202ENST00000541280 CD46P15529 392 aa11.39□□□□□ -0.59
SUDS3-202ENST00000541280 MORN1Q5T089 497 aa11.39□□□□□ -0.59
SUDS3-202ENST00000541280 IRX2Q9BZI1 471 aaPredicted RBP11.39□□□□□ -0.59
SUDS3-202ENST00000541280 V9GY48 417 aaPredicted RBP11.39□□□□□ -0.59
SUDS3-202ENST00000541280 FUT2Q10981 343 aa11.38□□□□□ -0.59
SUDS3-202ENST00000541280 SCUBE3Q8IX30 993 aa11.38□□□□□ -0.59
SUDS3-202ENST00000541280 ZC3H15Q8WU90 426 aaKnown RBP11.38□□□□□ -0.59
SUDS3-202ENST00000541280 ATP6V1AP38606 617 aa11.37□□□□□ -0.59
SUDS3-202ENST00000541280 PUS10Q3MIT2 529 aaKnown RBP11.37□□□□□ -0.59
SUDS3-202ENST00000541280 MDM2Q00987 491 aaPredicted RBP11.36□□□□□ -0.59
SUDS3-202ENST00000541280 PRKD2Q9BZL6 878 aa11.36□□□□□ -0.59
SUDS3-202ENST00000541280 CLCN1P35523 988 aa11.35□□□□□ -0.59
SUDS3-202ENST00000541280 GPCPD1Q9NPB8 672 aa11.35□□□□□ -0.59
SUDS3-202ENST00000541280 RNF223E7ERA6 249 aa11.34□□□□□ -0.59
SUDS3-202ENST00000541280 THAP11Q96EK4 314 aa11.34□□□□□ -0.59
SUDS3-202ENST00000541280 SALL2Q9Y467 1007 aaPredicted RBP11.34□□□□□ -0.59
SUDS3-202ENST00000541280 ANKLE1Q8NAG6 615 aa11.33□□□□□ -0.6
SUDS3-202ENST00000541280 S1PR4O95977 384 aa11.32□□□□□ -0.6
SUDS3-202ENST00000541280 FAM217BQ9NTX9 383 aaPredicted RBP11.32□□□□□ -0.6
SUDS3-202ENST00000541280 GRIPAP1Q4V328 841 aa11.31□□□□□ -0.6
SUDS3-202ENST00000541280 SPSB2Q99619 263 aa11.31□□□□□ -0.6
SUDS3-202ENST00000541280 SLC6A16Q9GZN6 736 aa11.31□□□□□ -0.6
SUDS3-202ENST00000541280 SLC27A5Q9Y2P5 690 aa11.31□□□□□ -0.6
SUDS3-202ENST00000541280 DCAF1Q9Y4B6 1507 aa11.3□□□□□ -0.6
SUDS3-202ENST00000541280 AMHR2Q16671 573 aa11.3□□□□□ -0.6
SUDS3-202ENST00000541280 KDM4AO75164 1064 aa11.29□□□□□ -0.6
SUDS3-202ENST00000541280 USP46P62068 366 aa11.29□□□□□ -0.6
SUDS3-202ENST00000541280 KRI1Q8N9T8 703 aaKnown RBP11.29□□□□□ -0.6
SUDS3-202ENST00000541280 ZCCHC6Q5VYS8 1495 aaKnown RBP11.29□□□□□ -0.6
SUDS3-202ENST00000541280 FMNL1O95466 1100 aaPredicted RBP11.28□□□□□ -0.6
SUDS3-202ENST00000541280 BRICD5Q6PL45 260 aa11.28□□□□□ -0.6
SUDS3-202ENST00000541280 EMID1Q96A84 441 aaPredicted RBP11.28□□□□□ -0.6
SUDS3-202ENST00000541280 LAPTM4AQ15012 233 aa11.27□□□□□ -0.61
SUDS3-202ENST00000541280 REPIN1Q9BWE0 567 aaKnown RBP11.27□□□□□ -0.61
SUDS3-202ENST00000541280 PPEF1O14829 653 aaPredicted RBP11.25□□□□□ -0.61
SUDS3-202ENST00000541280 MSS51Q4VC12 460 aa11.25□□□□□ -0.61
SUDS3-202ENST00000541280 FAM160A2Q8N612 972 aaPredicted RBP11.24□□□□□ -0.61
SUDS3-202ENST00000541280 HOXA2O43364 376 aa11.23□□□□□ -0.61
SUDS3-202ENST00000541280 SLC19A1P41440 591 aa11.23□□□□□ -0.61
SUDS3-202ENST00000541280 Q3C1V9 767 aa11.23□□□□□ -0.61
SUDS3-202ENST00000541280 RNF19BQ6ZMZ0 732 aa11.22□□□□□ -0.61
SUDS3-202ENST00000541280 SPRYD7Q5W111 196 aa11.21□□□□□ -0.61
SUDS3-202ENST00000541280 NRG2O14511 850 aaPredicted RBP11.2□□□□□ -0.62
SUDS3-202ENST00000541280 GFRA3O60609 400 aa11.2□□□□□ -0.62
SUDS3-202ENST00000541280 SSTR3P32745 418 aaPredicted RBP11.2□□□□□ -0.62
SUDS3-202ENST00000541280 PLA2G2CQ5R387 149 aa11.2□□□□□ -0.62
SUDS3-202ENST00000541280 LIAT1Q6ZQX7 453 aa11.2□□□□□ -0.62
SUDS3-202ENST00000541280 SLC24A1O60721 1099 aa11.19□□□□□ -0.62
SUDS3-202ENST00000541280 AK7Q96M32 723 aa11.19□□□□□ -0.62
SUDS3-202ENST00000541280 TRIM66O15016 1216 aa11.18□□□□□ -0.62
SUDS3-202ENST00000541280 TTLL12Q14166 644 aaPredicted RBP11.18□□□□□ -0.62
SUDS3-202ENST00000541280 ZNF598Q86UK7 904 aaKnown RBP11.18□□□□□ -0.62
SUDS3-202ENST00000541280 MMP16P51512 607 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms