RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 PIK3C2BO00750 1634 aa13.61□□□□□ -0.23
DDX55-208ENST00000541259 SETD1BQ9UPS6 1966 aaKnown RBP13.6□□□□□ -0.23
DDX55-208ENST00000541259 CCDC144AA2RUR9 1427 aa13.59□□□□□ -0.23
DDX55-208ENST00000541259 POLA2Q14181 598 aa13.58□□□□□ -0.24
DDX55-208ENST00000541259 TNRQ92752 1358 aa13.58□□□□□ -0.24
DDX55-208ENST00000541259 IDI1Q13907 227 aa13.57□□□□□ -0.24
DDX55-208ENST00000541259 ABCB7O75027 752 aa13.55□□□□□ -0.24
DDX55-208ENST00000541259 CHGAP10645 457 aaKnown RBP13.54□□□□□ -0.24
DDX55-208ENST00000541259 SLC52A1Q9NWF4 448 aa13.54□□□□□ -0.24
DDX55-208ENST00000541259 TMEM131LA2VDJ0 1609 aa13.53□□□□□ -0.24
DDX55-208ENST00000541259 MYO3AQ8NEV4 1616 aa13.53□□□□□ -0.24
DDX55-208ENST00000541259 RGL3Q3MIN7 710 aa13.53□□□□□ -0.24
DDX55-208ENST00000541259 SPATA31E1Q6ZUB1 1445 aa13.53□□□□□ -0.24
DDX55-208ENST00000541259 UBR1Q8IWV7 1749 aa13.53□□□□□ -0.24
DDX55-208ENST00000541259 ADGRB3O60242 1522 aa13.51□□□□□ -0.25
DDX55-208ENST00000541259 L3MBTL2Q969R5 705 aa13.51□□□□□ -0.25
DDX55-208ENST00000541259 NLRP1Q9C000 1473 aa13.5□□□□□ -0.25
DDX55-208ENST00000541259 TONSLQ96HA7 1378 aa13.5□□□□□ -0.25
DDX55-208ENST00000541259 IFT172Q9UG01 1749 aa13.5□□□□□ -0.25
DDX55-208ENST00000541259 PPLO60437 1756 aa13.49□□□□□ -0.25
DDX55-208ENST00000541259 KDM5AP29375 1690 aaKnown RBP13.49□□□□□ -0.25
DDX55-208ENST00000541259 NEURL4Q96JN8 1562 aa13.49□□□□□ -0.25
DDX55-208ENST00000541259 A2ML1A8K2U0 1454 aa13.48□□□□□ -0.25
DDX55-208ENST00000541259 ZNF142P52746 1687 aaPredicted RBP13.48□□□□□ -0.25
DDX55-208ENST00000541259 ZNF326Q5BKZ1 582 aaKnown RBP13.48□□□□□ -0.25
DDX55-208ENST00000541259 STAG3Q9UJ98 1225 aa13.48□□□□□ -0.25
DDX55-208ENST00000541259 CEP170BQ9Y4F5 1589 aaPredicted RBP13.48□□□□□ -0.25
DDX55-208ENST00000541259 KDM2AQ9Y2K7 1162 aa13.47□□□□□ -0.25
DDX55-208ENST00000541259 DSG3P32926 999 aa13.46□□□□□ -0.25
DDX55-208ENST00000541259 DCAF11Q8TEB1 546 aa13.46□□□□□ -0.25
DDX55-208ENST00000541259 TIMELESSQ9UNS1 1208 aa13.46□□□□□ -0.25
DDX55-208ENST00000541259 NEXMIFQ5QGS0 1516 aa13.45□□□□□ -0.26
DDX55-208ENST00000541259 NUTM2DQ5VT03 806 aaPredicted RBP13.45□□□□□ -0.26
DDX55-208ENST00000541259 PPP1R15AO75807 674 aaPredicted RBP13.44□□□□□ -0.26
DDX55-208ENST00000541259 ZEB1P37275 1124 aaPredicted RBP13.44□□□□□ -0.26
DDX55-208ENST00000541259 FKBP8Q14318 412 aa13.44□□□□□ -0.26
DDX55-208ENST00000541259 ZBTB12Q9Y330 459 aaPredicted RBP13.44□□□□□ -0.26
DDX55-208ENST00000541259 UHRF1BP1Q6BDS2 1440 aa13.44□□□□□ -0.26
DDX55-208ENST00000541259 RPGRIP1LQ68CZ1 1315 aa13.42□□□□□ -0.26
DDX55-208ENST00000541259 RIMS2Q9UQ26 1411 aa13.42□□□□□ -0.26
DDX55-208ENST00000541259 NBPF8Q3BBV2 869 aa13.42□□□□□ -0.26
DDX55-208ENST00000541259 ADGRF5Q8IZF2 1346 aa13.41□□□□□ -0.26
DDX55-208ENST00000541259 ZFYVE9O95405 1425 aa13.41□□□□□ -0.26
DDX55-208ENST00000541259 THEMISQ8N1K5 641 aaPredicted RBP13.41□□□□□ -0.26
DDX55-208ENST00000541259 TMEM2Q9UHN6 1383 aa13.4□□□□□ -0.26
DDX55-208ENST00000541259 ARHGAP23Q9P227 1491 aa13.4□□□□□ -0.26
DDX55-208ENST00000541259 SLIT1O75093 1534 aa13.39□□□□□ -0.27
DDX55-208ENST00000541259 LTKP29376 864 aa13.39□□□□□ -0.27
DDX55-208ENST00000541259 MYOM2P54296 1465 aa13.38□□□□□ -0.27
DDX55-208ENST00000541259 LMTK3Q96Q04 1460 aa13.38□□□□□ -0.27
DDX55-208ENST00000541259 HSPA2P54652 639 aa13.38□□□□□ -0.27
DDX55-208ENST00000541259 PRAG1Q86YV5 1406 aa13.38□□□□□ -0.27
DDX55-208ENST00000541259 NRXN1Q9ULB1 1477 aa13.37□□□□□ -0.27
DDX55-208ENST00000541259 VGFO15240 615 aaPredicted RBP13.37□□□□□ -0.27
DDX55-208ENST00000541259 TXNDC2Q86VQ3 553 aa13.37□□□□□ -0.27
DDX55-208ENST00000541259 POLR1AO95602 1720 aaPredicted RBP13.36□□□□□ -0.27
DDX55-208ENST00000541259 TRPM1Q7Z4N2 1603 aa13.36□□□□□ -0.27
DDX55-208ENST00000541259 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.36□□□□□ -0.27
DDX55-208ENST00000541259 IQGAP1P46940 1657 aa13.36□□□□□ -0.27
DDX55-208ENST00000541259 NRXN3Q9Y4C0 1643 aa13.35□□□□□ -0.27
DDX55-208ENST00000541259 STAC3Q96MF2 364 aa13.35□□□□□ -0.27
DDX55-208ENST00000541259 KIAA1210Q9ULL0 1709 aa13.34□□□□□ -0.27
DDX55-208ENST00000541259 PIK3C2GO75747 1445 aa13.34□□□□□ -0.27
DDX55-208ENST00000541259 HDGFP51858 240 aaKnown RBP13.34□□□□□ -0.27
DDX55-208ENST00000541259 EID1Q9Y6B2 187 aa13.34□□□□□ -0.27
DDX55-208ENST00000541259 SCAF11Q99590 1463 aaKnown RBP13.34□□□□□ -0.27
DDX55-208ENST00000541259 NCKAP5LQ9HCH0 1330 aa13.34□□□□□ -0.27
DDX55-208ENST00000541259 SETD1AO15047 1707 aaKnown RBP13.33□□□□□ -0.27
DDX55-208ENST00000541259 STRCQ7RTU9 1775 aa13.33□□□□□ -0.28
DDX55-208ENST00000541259 MKRN4PQ13434 485 aaPredicted RBP13.33□□□□□ -0.28
DDX55-208ENST00000541259 NBPF1Q3BBV0 1214 aa13.33□□□□□ -0.28
DDX55-208ENST00000541259 CFAP70Q5T0N1 1121 aa13.33□□□□□ -0.28
DDX55-208ENST00000541259 ANKLE2Q86XL3 938 aa13.33□□□□□ -0.28
DDX55-208ENST00000541259 ALKQ9UM73 1620 aa13.32□□□□□ -0.28
DDX55-208ENST00000541259 PLEKHG1Q9ULL1 1385 aa13.32□□□□□ -0.28
DDX55-208ENST00000541259 BCANQ96GW7 911 aa13.31□□□□□ -0.28
DDX55-208ENST00000541259 C14orf93Q9H972 538 aaKnown RBP13.31□□□□□ -0.28
DDX55-208ENST00000541259 SETBP1Q9Y6X0 1596 aa13.31□□□□□ -0.28
DDX55-208ENST00000541259 RALGAPBQ86X10 1494 aa13.3□□□□□ -0.28
DDX55-208ENST00000541259 LAMC1P11047 1609 aa13.29□□□□□ -0.28
DDX55-208ENST00000541259 TMEM132EQ6IEE7 984 aa13.29□□□□□ -0.28
DDX55-208ENST00000541259 SLC26A8Q96RN1 970 aa13.29□□□□□ -0.28
DDX55-208ENST00000541259 ADAMTS13Q76LX8 1427 aa13.29□□□□□ -0.28
DDX55-208ENST00000541259 ASXL1Q8IXJ9 1541 aa13.29□□□□□ -0.28
DDX55-208ENST00000541259 ROCK2O75116 1388 aaKnown RBP13.28□□□□□ -0.28
DDX55-208ENST00000541259 NPHP4O75161 1426 aaPredicted RBP13.28□□□□□ -0.28
DDX55-208ENST00000541259 MED14O60244 1454 aa13.28□□□□□ -0.28
DDX55-208ENST00000541259 ADGRB1O14514 1584 aa13.27□□□□□ -0.29
DDX55-208ENST00000541259 METP08581 1390 aa13.26□□□□□ -0.29
DDX55-208ENST00000541259 GPRASP1Q5JY77 1395 aa13.26□□□□□ -0.29
DDX55-208ENST00000541259 CARD11Q9BXL7 1154 aa13.26□□□□□ -0.29
DDX55-208ENST00000541259 TBX22Q9Y458 520 aa13.24□□□□□ -0.29
DDX55-208ENST00000541259 CHD2O14647 1828 aaKnown RBP13.24□□□□□ -0.29
DDX55-208ENST00000541259 DIP2AQ14689 1571 aa13.24□□□□□ -0.29
DDX55-208ENST00000541259 STK26Q9P289 416 aa13.23□□□□□ -0.29
DDX55-208ENST00000541259 SPDYE4A6NLX3 237 aa13.22□□□□□ -0.29
DDX55-208ENST00000541259 HIRIP3Q9BW71 556 aaPredicted RBP13.22□□□□□ -0.29
DDX55-208ENST00000541259 TRAK1Q9UPV9 953 aa13.22□□□□□ -0.29
DDX55-208ENST00000541259 ARHGEF28Q8N1W1 1705 aaKnown RBP13.22□□□□□ -0.29
DDX55-208ENST00000541259 PTPRUQ92729 1446 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms