RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 NRXN1Q9ULB1 1477 aa17.15■□□□□ 0.34
AP003559.1-201ENST00000540906 ERVK-7P63135 1459 aa17.14■□□□□ 0.34
AP003559.1-201ENST00000540906 IDI1Q13907 227 aa17.14■□□□□ 0.34
AP003559.1-201ENST00000540906 KIAA1210Q9ULL0 1709 aa17.13■□□□□ 0.33
AP003559.1-201ENST00000540906 CFAP70Q5T0N1 1121 aa17.12■□□□□ 0.33
AP003559.1-201ENST00000540906 POLR3GLQ9BT43 218 aa17.12■□□□□ 0.33
AP003559.1-201ENST00000540906 NEXMIFQ5QGS0 1516 aa17.11■□□□□ 0.33
AP003559.1-201ENST00000540906 TESK2Q96S53 571 aa17.11■□□□□ 0.33
AP003559.1-201ENST00000540906 TMEM131LA2VDJ0 1609 aa17.11■□□□□ 0.33
AP003559.1-201ENST00000540906 ARID4BQ4LE39 1312 aaPredicted RBP17.1■□□□□ 0.33
AP003559.1-201ENST00000540906 NUTM2DQ5VT03 806 aaPredicted RBP17.1■□□□□ 0.33
AP003559.1-201ENST00000540906 ANP32CO43423 234 aa17.1■□□□□ 0.33
AP003559.1-201ENST00000540906 STAC3Q96MF2 364 aa17.1■□□□□ 0.33
AP003559.1-201ENST00000540906 SPATA31D1Q6ZQQ2 1576 aa17.09■□□□□ 0.33
AP003559.1-201ENST00000540906 DISP3Q9P2K9 1392 aa17.08■□□□□ 0.33
AP003559.1-201ENST00000540906 PPP6R1Q9UPN7 881 aa17.08■□□□□ 0.33
AP003559.1-201ENST00000540906 PIK3C2GO75747 1445 aa17.08■□□□□ 0.32
AP003559.1-201ENST00000540906 SCAF11Q99590 1463 aaKnown RBP17.07■□□□□ 0.32
AP003559.1-201ENST00000540906 SLC52A1Q9NWF4 448 aa17.06■□□□□ 0.32
AP003559.1-201ENST00000540906 ZMYM3Q14202 1370 aa17.04■□□□□ 0.32
AP003559.1-201ENST00000540906 RPGRIP1LQ68CZ1 1315 aa17.04■□□□□ 0.32
AP003559.1-201ENST00000540906 ADGRB1O14514 1584 aa17.03■□□□□ 0.32
AP003559.1-201ENST00000540906 SENP3Q9H4L4 574 aaPredicted RBP17.03■□□□□ 0.32
AP003559.1-201ENST00000540906 SETBP1Q9Y6X0 1596 aa17.01■□□□□ 0.31
AP003559.1-201ENST00000540906 C14orf93Q9H972 538 aaKnown RBP17.01■□□□□ 0.31
AP003559.1-201ENST00000540906 CCER2I3L3R5 266 aa17■□□□□ 0.31
AP003559.1-201ENST00000540906 TMEM132EQ6IEE7 984 aa17■□□□□ 0.31
AP003559.1-201ENST00000540906 A2ML1A8K2U0 1454 aa16.99■□□□□ 0.31
AP003559.1-201ENST00000540906 ASXL1Q8IXJ9 1541 aa16.99■□□□□ 0.31
AP003559.1-201ENST00000540906 CCDC184Q52MB2 194 aa16.99■□□□□ 0.31
AP003559.1-201ENST00000540906 PRKRIP1Q9H875 184 aaPredicted RBP16.99■□□□□ 0.31
AP003559.1-201ENST00000540906 ZFYVE9O95405 1425 aa16.97■□□□□ 0.31
AP003559.1-201ENST00000540906 MYO3AQ8NEV4 1616 aa16.97■□□□□ 0.31
AP003559.1-201ENST00000540906 CNGB1Q14028 1251 aaPredicted RBP16.96■□□□□ 0.31
AP003559.1-201ENST00000540906 PLPPR3Q6T4P5 718 aa16.96■□□□□ 0.31
AP003559.1-201ENST00000540906 ESF1Q9H501 851 aaKnown RBP16.96■□□□□ 0.31
AP003559.1-201ENST00000540906 VGFO15240 615 aaPredicted RBP16.96■□□□□ 0.3
AP003559.1-201ENST00000540906 CEBPAP49715 358 aaPredicted RBP16.96■□□□□ 0.3
AP003559.1-201ENST00000540906 TMF1P82094 1093 aa16.95■□□□□ 0.3
AP003559.1-201ENST00000540906 CENPBP07199 599 aaPredicted RBP16.94■□□□□ 0.3
AP003559.1-201ENST00000540906 TRAK1Q9UPV9 953 aa16.94■□□□□ 0.3
AP003559.1-201ENST00000540906 C3P01024 1663 aa16.94■□□□□ 0.3
AP003559.1-201ENST00000540906 FER1L4A9Z1Z3 1794 aa16.94■□□□□ 0.3
AP003559.1-201ENST00000540906 EIF3AQ14152 1382 aaKnown RBP16.93■□□□□ 0.3
AP003559.1-201ENST00000540906 TNRQ92752 1358 aa16.93■□□□□ 0.3
AP003559.1-201ENST00000540906 MYOM1P52179 1685 aa16.93■□□□□ 0.3
AP003559.1-201ENST00000540906 ARHGEF28Q8N1W1 1705 aaKnown RBP16.92■□□□□ 0.3
AP003559.1-201ENST00000540906 RIMS2Q9UQ26 1411 aa16.92■□□□□ 0.3
AP003559.1-201ENST00000540906 STAG3Q9UJ98 1225 aa16.92■□□□□ 0.3
AP003559.1-201ENST00000540906 QRICH2Q9H0J4 1663 aa16.91■□□□□ 0.3
AP003559.1-201ENST00000540906 ALKQ9UM73 1620 aa16.9■□□□□ 0.3
AP003559.1-201ENST00000540906 PTPRMP28827 1452 aa16.9■□□□□ 0.3
AP003559.1-201ENST00000540906 UBR1Q8IWV7 1749 aa16.9■□□□□ 0.3
AP003559.1-201ENST00000540906 PER1O15534 1290 aaPredicted RBP16.89■□□□□ 0.29
AP003559.1-201ENST00000540906 SETD1AO15047 1707 aaKnown RBP16.89■□□□□ 0.29
AP003559.1-201ENST00000540906 NRXN3Q9Y4C0 1643 aa16.88■□□□□ 0.29
AP003559.1-201ENST00000540906 CENPJQ9HC77 1338 aaPredicted RBP16.88■□□□□ 0.29
AP003559.1-201ENST00000540906 KDM5AP29375 1690 aaKnown RBP16.88■□□□□ 0.29
AP003559.1-201ENST00000540906 PANK3Q9H999 370 aa16.88■□□□□ 0.29
AP003559.1-201ENST00000540906 SBNO2Q9Y2G9 1366 aa16.86■□□□□ 0.29
AP003559.1-201ENST00000540906 STK26Q9P289 416 aa16.85■□□□□ 0.29
AP003559.1-201ENST00000540906 TULP4Q9NRJ4 1543 aa16.83■□□□□ 0.29
AP003559.1-201ENST00000540906 SCAF1Q9H7N4 1312 aaKnown RBP16.83■□□□□ 0.29
AP003559.1-201ENST00000540906 RIMS1Q86UR5 1692 aaKnown RBP16.83■□□□□ 0.28
AP003559.1-201ENST00000540906 YTHDC2Q9H6S0 1430 aaKnown RBP16.83■□□□□ 0.28
AP003559.1-201ENST00000540906 MRS2Q9HD23 443 aa16.82■□□□□ 0.28
AP003559.1-201ENST00000540906 KDM4FA0A1W2PPD8 638 aa16.82■□□□□ 0.28
AP003559.1-201ENST00000540906 SAFB2Q14151 953 aaKnown RBP eCLIP16.82■□□□□ 0.28
AP003559.1-201ENST00000540906 TMEM2Q9UHN6 1383 aa16.81■□□□□ 0.28
AP003559.1-201ENST00000540906 NLRP1Q9C000 1473 aa16.81■□□□□ 0.28
AP003559.1-201ENST00000540906 PARD3Q8TEW0 1356 aa16.8■□□□□ 0.28
AP003559.1-201ENST00000540906 CDCA8Q53HL2 280 aa16.79■□□□□ 0.28
AP003559.1-201ENST00000540906 CC2D1BQ5T0F9 858 aaKnown RBP16.79■□□□□ 0.28
AP003559.1-201ENST00000540906 METP08581 1390 aa16.79■□□□□ 0.28
AP003559.1-201ENST00000540906 ADAMTSL3P82987 1691 aa16.78■□□□□ 0.28
AP003559.1-201ENST00000540906 LTKP29376 864 aa16.78■□□□□ 0.28
AP003559.1-201ENST00000540906 KTN1Q86UP2 1357 aaKnown RBP16.77■□□□□ 0.28
AP003559.1-201ENST00000540906 PRAM1Q96QH2 718 aa16.77■□□□□ 0.27
AP003559.1-201ENST00000540906 FAM9BQ8IZU0 186 aa16.76■□□□□ 0.27
AP003559.1-201ENST00000540906 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.76■□□□□ 0.27
AP003559.1-201ENST00000540906 PLEKHH1Q9ULM0 1364 aa16.76■□□□□ 0.27
AP003559.1-201ENST00000540906 AMER1Q5JTC6 1135 aaPredicted RBP16.75■□□□□ 0.27
AP003559.1-201ENST00000540906 CARD14Q9BXL6 1004 aa16.75■□□□□ 0.27
AP003559.1-201ENST00000540906 MYBBP1AQ9BQG0 1328 aaKnown RBP16.75■□□□□ 0.27
AP003559.1-201ENST00000540906 LRPPRCP42704 1394 aaKnown RBP16.75■□□□□ 0.27
AP003559.1-201ENST00000540906 RALBP1Q15311 655 aa16.75■□□□□ 0.27
AP003559.1-201ENST00000540906 ADAMTS13Q76LX8 1427 aa16.75■□□□□ 0.27
AP003559.1-201ENST00000540906 MINK1Q8N4C8 1332 aaPredicted RBP16.74■□□□□ 0.27
AP003559.1-201ENST00000540906 ARHGAP23Q9P227 1491 aa16.73■□□□□ 0.27
AP003559.1-201ENST00000540906 SLC12A5Q9H2X9 1139 aa16.73■□□□□ 0.27
AP003559.1-201ENST00000540906 CABP2Q9NPB3 220 aa16.73■□□□□ 0.27
AP003559.1-201ENST00000540906 SLIT1O75093 1534 aa16.73■□□□□ 0.27
AP003559.1-201ENST00000540906 DLC1Q96QB1 1528 aa16.73■□□□□ 0.27
AP003559.1-201ENST00000540906 WAPLQ7Z5K2 1190 aa16.73■□□□□ 0.27
AP003559.1-201ENST00000540906 GTF3C3Q9Y5Q9 886 aa16.72■□□□□ 0.27
AP003559.1-201ENST00000540906 SLC24A1O60721 1099 aa16.71■□□□□ 0.27
AP003559.1-201ENST00000540906 HNRNPUQ00839 825 aaKnown RBP eCLIP16.71■□□□□ 0.27
AP003559.1-201ENST00000540906 EVC2Q86UK5 1308 aa16.71■□□□□ 0.26
AP003559.1-201ENST00000540906 POGKQ9P215 609 aa16.7■□□□□ 0.26
AP003559.1-201ENST00000540906 KNSTRNQ9Y448 316 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms