RNA–Protein interactions for RNA: ENST00000539925.5

LTBR-207, Transcript of lymphotoxin beta receptor, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LTBR, Length 1,665 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-207ENST00000539925 MROH2AA6NES4 1674 aa23.64■■□□□ 1.37
LTBR-207ENST00000539925 CHGAP10645 457 aaKnown RBP23.64■■□□□ 1.37
LTBR-207ENST00000539925 CDCA8Q53HL2 280 aa23.64■■□□□ 1.37
LTBR-207ENST00000539925 IQGAP1P46940 1657 aa23.63■■□□□ 1.37
LTBR-207ENST00000539925 SIGLEC1Q9BZZ2 1709 aa23.63■■□□□ 1.37
LTBR-207ENST00000539925 PREX1Q8TCU6 1659 aa23.62■■□□□ 1.37
LTBR-207ENST00000539925 VGFO15240 615 aaPredicted RBP23.61■■□□□ 1.37
LTBR-207ENST00000539925 TESK2Q96S53 571 aa23.61■■□□□ 1.37
LTBR-207ENST00000539925 PRKRIP1Q9H875 184 aaPredicted RBP23.61■■□□□ 1.37
LTBR-207ENST00000539925 SETBP1Q9Y6X0 1596 aa23.61■■□□□ 1.37
LTBR-207ENST00000539925 PPLO60437 1756 aa23.6■■□□□ 1.37
LTBR-207ENST00000539925 ADGRF5Q8IZF2 1346 aa23.6■■□□□ 1.37
LTBR-207ENST00000539925 ZFYVE9O95405 1425 aa23.6■■□□□ 1.37
LTBR-207ENST00000539925 KTN1Q86UP2 1357 aaKnown RBP23.6■■□□□ 1.37
LTBR-207ENST00000539925 ERVK-7P63135 1459 aa23.6■■□□□ 1.37
LTBR-207ENST00000539925 PIK3C2GO75747 1445 aa23.59■■□□□ 1.37
LTBR-207ENST00000539925 CFAP65Q6ZU64 1925 aaKnown RBP23.59■■□□□ 1.37
LTBR-207ENST00000539925 POLR3GLQ9BT43 218 aa23.57■■□□□ 1.36
LTBR-207ENST00000539925 IDI1Q13907 227 aa23.57■■□□□ 1.36
LTBR-207ENST00000539925 ESF1Q9H501 851 aaKnown RBP23.57■■□□□ 1.36
LTBR-207ENST00000539925 C14orf93Q9H972 538 aaKnown RBP23.55■■□□□ 1.36
LTBR-207ENST00000539925 CFAP70Q5T0N1 1121 aa23.54■■□□□ 1.36
LTBR-207ENST00000539925 SPATA31D1Q6ZQQ2 1576 aa23.53■■□□□ 1.36
LTBR-207ENST00000539925 NEXMIFQ5QGS0 1516 aa23.52■■□□□ 1.36
LTBR-207ENST00000539925 CLTCQ00610 1675 aaKnown RBP23.52■■□□□ 1.36
LTBR-207ENST00000539925 SBNO2Q9Y2G9 1366 aa23.52■■□□□ 1.36
LTBR-207ENST00000539925 DISP3Q9P2K9 1392 aa23.5■■□□□ 1.35
LTBR-207ENST00000539925 TMEM131LA2VDJ0 1609 aa23.5■■□□□ 1.35
LTBR-207ENST00000539925 RALBP1Q15311 655 aa23.48■■□□□ 1.35
LTBR-207ENST00000539925 MYO3AQ8NEV4 1616 aa23.47■■□□□ 1.35
LTBR-207ENST00000539925 FBXO31Q5XUX0 539 aaPredicted RBP23.45■■□□□ 1.34
LTBR-207ENST00000539925 ZMYM3Q14202 1370 aa23.45■■□□□ 1.34
LTBR-207ENST00000539925 STAG3Q9UJ98 1225 aa23.44■■□□□ 1.34
LTBR-207ENST00000539925 MLECQ14165 292 aa23.44■■□□□ 1.34
LTBR-207ENST00000539925 ADGRB1O14514 1584 aa23.43■■□□□ 1.34
LTBR-207ENST00000539925 TRHP20396 242 aaPredicted RBP23.41■■□□□ 1.34
LTBR-207ENST00000539925 CENPJQ9HC77 1338 aaPredicted RBP23.41■■□□□ 1.34
LTBR-207ENST00000539925 MRS2Q9HD23 443 aa23.41■■□□□ 1.34
LTBR-207ENST00000539925 HDGFP51858 240 aaKnown RBP23.38■■□□□ 1.33
LTBR-207ENST00000539925 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.38■■□□□ 1.33
LTBR-207ENST00000539925 PUS7Q96PZ0 661 aaKnown RBP23.38■■□□□ 1.33
LTBR-207ENST00000539925 A2ML1A8K2U0 1454 aa23.37■■□□□ 1.33
LTBR-207ENST00000539925 PER1O15534 1290 aaPredicted RBP23.37■■□□□ 1.33
LTBR-207ENST00000539925 MYBBP1AQ9BQG0 1328 aaKnown RBP23.36■■□□□ 1.33
LTBR-207ENST00000539925 KDM5AP29375 1690 aaKnown RBP23.36■■□□□ 1.33
LTBR-207ENST00000539925 SCAF1Q9H7N4 1312 aaKnown RBP23.35■■□□□ 1.33
LTBR-207ENST00000539925 TNRQ92752 1358 aa23.35■■□□□ 1.33
LTBR-207ENST00000539925 PANK3Q9H999 370 aa23.35■■□□□ 1.33
LTBR-207ENST00000539925 BRD4O60885 1362 aaPredicted RBP23.34■■□□□ 1.33
LTBR-207ENST00000539925 MYO5BQ9ULV0 1848 aa23.33■■□□□ 1.33
LTBR-207ENST00000539925 PARD3Q8TEW0 1356 aa23.33■■□□□ 1.32
LTBR-207ENST00000539925 TRAK1Q9UPV9 953 aa23.32■■□□□ 1.32
LTBR-207ENST00000539925 RIMS2Q9UQ26 1411 aa23.31■■□□□ 1.32
LTBR-207ENST00000539925 GTF3C3Q9Y5Q9 886 aa23.31■■□□□ 1.32
LTBR-207ENST00000539925 NPC1L1Q9UHC9 1359 aa23.31■■□□□ 1.32
LTBR-207ENST00000539925 KNSTRNQ9Y448 316 aa23.3■■□□□ 1.32
LTBR-207ENST00000539925 NLRP1Q9C000 1473 aa23.29■■□□□ 1.32
LTBR-207ENST00000539925 NLRP13Q86W25 1043 aa23.28■■□□□ 1.32
LTBR-207ENST00000539925 TMEM132EQ6IEE7 984 aa23.28■■□□□ 1.32
LTBR-207ENST00000539925 TMC1Q8TDI8 760 aa23.28■■□□□ 1.32
LTBR-207ENST00000539925 QRICH2Q9H0J4 1663 aa23.26■■□□□ 1.31
LTBR-207ENST00000539925 NUTM2DQ5VT03 806 aaPredicted RBP23.26■■□□□ 1.31
LTBR-207ENST00000539925 EVC2Q86UK5 1308 aa23.26■■□□□ 1.31
LTBR-207ENST00000539925 CCDC184Q52MB2 194 aa23.25■■□□□ 1.31
LTBR-207ENST00000539925 ALKQ9UM73 1620 aa23.25■■□□□ 1.31
LTBR-207ENST00000539925 HNRNPUQ00839 825 aaKnown RBP eCLIP23.25■■□□□ 1.31
LTBR-207ENST00000539925 ARHGEF28Q8N1W1 1705 aaKnown RBP23.24■■□□□ 1.31
LTBR-207ENST00000539925 YTHDC2Q9H6S0 1430 aaKnown RBP23.23■■□□□ 1.31
LTBR-207ENST00000539925 FAM9BQ8IZU0 186 aa23.22■■□□□ 1.31
LTBR-207ENST00000539925 MYOM1P52179 1685 aa23.22■■□□□ 1.31
LTBR-207ENST00000539925 ASXL1Q8IXJ9 1541 aa23.22■■□□□ 1.31
LTBR-207ENST00000539925 NINLQ9Y2I6 1382 aa23.21■■□□□ 1.31
LTBR-207ENST00000539925 DLC1Q96QB1 1528 aa23.2■■□□□ 1.31
LTBR-207ENST00000539925 INSRP06213 1382 aa23.19■■□□□ 1.3
LTBR-207ENST00000539925 TMEM2Q9UHN6 1383 aa23.19■■□□□ 1.3
LTBR-207ENST00000539925 PNISRQ8TF01 805 aaKnown RBP23.19■■□□□ 1.3
LTBR-207ENST00000539925 LRPPRCP42704 1394 aaKnown RBP23.18■■□□□ 1.3
LTBR-207ENST00000539925 AMER1Q5JTC6 1135 aaPredicted RBP23.18■■□□□ 1.3
LTBR-207ENST00000539925 ZBED9Q6R2W3 1325 aa23.18■■□□□ 1.3
LTBR-207ENST00000539925 FER1L4A9Z1Z3 1794 aa23.16■■□□□ 1.3
LTBR-207ENST00000539925 PTPRMP28827 1452 aa23.16■■□□□ 1.3
LTBR-207ENST00000539925 ABCC11Q96J66 1382 aa23.16■■□□□ 1.3
LTBR-207ENST00000539925 CC2D1BQ5T0F9 858 aaKnown RBP23.16■■□□□ 1.3
LTBR-207ENST00000539925 UBR1Q8IWV7 1749 aa23.15■■□□□ 1.3
LTBR-207ENST00000539925 CNGB1Q14028 1251 aaPredicted RBP23.15■■□□□ 1.3
LTBR-207ENST00000539925 SIRT1Q96EB6 747 aa23.14■■□□□ 1.29
LTBR-207ENST00000539925 POGKQ9P215 609 aa23.14■■□□□ 1.29
LTBR-207ENST00000539925 ATAD2Q6PL18 1390 aa23.13■■□□□ 1.29
LTBR-207ENST00000539925 C3P01024 1663 aa23.12■■□□□ 1.29
LTBR-207ENST00000539925 STK26Q9P289 416 aa23.12■■□□□ 1.29
LTBR-207ENST00000539925 TULP4Q9NRJ4 1543 aa23.11■■□□□ 1.29
LTBR-207ENST00000539925 SETD1AO15047 1707 aaKnown RBP23.1■■□□□ 1.29
LTBR-207ENST00000539925 PLEKHG1Q9ULL1 1385 aa23.09■■□□□ 1.29
LTBR-207ENST00000539925 PRAM1Q96QH2 718 aa23.09■■□□□ 1.29
LTBR-207ENST00000539925 EID1Q9Y6B2 187 aa23.09■■□□□ 1.29
LTBR-207ENST00000539925 ANKRD36BQ8N2N9 1353 aa23.07■■□□□ 1.28
LTBR-207ENST00000539925 NRXN3Q9Y4C0 1643 aa23.07■■□□□ 1.28
LTBR-207ENST00000539925 SLIT1O75093 1534 aa23.07■■□□□ 1.28
LTBR-207ENST00000539925 TECPR2O15040 1411 aa23.07■■□□□ 1.28
LTBR-207ENST00000539925 FAM135BQ49AJ0 1406 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms