RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 CBX1P83916 185 aa15.51■□□□□ 0.07
USP3-203ENST00000538686 ZNF445P59923 1031 aa15.5■□□□□ 0.07
USP3-203ENST00000538686 PLCD3Q8N3E9 789 aa15.5■□□□□ 0.07
USP3-203ENST00000538686 ZFP91Q96JP5 570 aaPredicted RBP15.5■□□□□ 0.07
USP3-203ENST00000538686 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.5■□□□□ 0.07
USP3-203ENST00000538686 SUPT6HQ7KZ85 1726 aaKnown RBP15.5■□□□□ 0.07
USP3-203ENST00000538686 TCOF1Q13428 1488 aaKnown RBP15.5■□□□□ 0.07
USP3-203ENST00000538686 MTUS2Q5JR59 1369 aa15.5■□□□□ 0.07
USP3-203ENST00000538686 KLHL40Q2TBA0 621 aa15.5■□□□□ 0.07
USP3-203ENST00000538686 TNPO1Q92973 898 aaKnown RBP15.5■□□□□ 0.07
USP3-203ENST00000538686 RAB3GAP1Q15042 981 aa15.49■□□□□ 0.07
USP3-203ENST00000538686 CGNQ9P2M7 1197 aaKnown RBP15.49■□□□□ 0.07
USP3-203ENST00000538686 ARHGAP31Q2M1Z3 1444 aa15.49■□□□□ 0.07
USP3-203ENST00000538686 CCDC66A2RUB6 948 aa15.48■□□□□ 0.07
USP3-203ENST00000538686 DUSP27Q5VZP5 1158 aa15.48■□□□□ 0.07
USP3-203ENST00000538686 SMC5Q8IY18 1101 aa15.48■□□□□ 0.07
USP3-203ENST00000538686 KIAA1107Q9UPP5 1409 aa15.48■□□□□ 0.07
USP3-203ENST00000538686 ANKRD30AQ9BXX3 1397 aa15.48■□□□□ 0.07
USP3-203ENST00000538686 SPRYD3Q8NCJ5 442 aa15.48■□□□□ 0.07
USP3-203ENST00000538686 AEBP2Q6ZN18 517 aaPredicted RBP15.47■□□□□ 0.07
USP3-203ENST00000538686 SNX21Q969T3 373 aa15.47■□□□□ 0.07
USP3-203ENST00000538686 C22orf23Q9BZE7 217 aa15.47■□□□□ 0.07
USP3-203ENST00000538686 TSPYL1Q9H0U9 437 aa15.47■□□□□ 0.07
USP3-203ENST00000538686 CLASP1Q7Z460 1538 aa15.47■□□□□ 0.07
USP3-203ENST00000538686 GABPB1Q06547 395 aaPredicted RBP15.47■□□□□ 0.07
USP3-203ENST00000538686 CLEC17AQ6ZS10 378 aa15.46■□□□□ 0.07
USP3-203ENST00000538686 PMFBP1Q8TBY8 1022 aa15.46■□□□□ 0.07
USP3-203ENST00000538686 FEZ1Q99689 392 aa15.46■□□□□ 0.07
USP3-203ENST00000538686 RALGAPBQ86X10 1494 aa15.46■□□□□ 0.06
USP3-203ENST00000538686 RTEL1-TNFRSF6BF6WH68 1400 aa15.45■□□□□ 0.06
USP3-203ENST00000538686 PDE3AQ14432 1141 aa15.45■□□□□ 0.06
USP3-203ENST00000538686 EHBP1L1Q8N3D4 1523 aa15.45■□□□□ 0.06
USP3-203ENST00000538686 IGHDP01880 384 aa15.45■□□□□ 0.06
USP3-203ENST00000538686 KIAA2012Q0VF49 1180 aa15.45■□□□□ 0.06
USP3-203ENST00000538686 ZNF771Q7L3S4 317 aaPredicted RBP15.44■□□□□ 0.06
USP3-203ENST00000538686 ATP1B4Q9UN42 357 aaPredicted RBP15.44■□□□□ 0.06
USP3-203ENST00000538686 GAPVD1Q14C86 1478 aa15.44■□□□□ 0.06
USP3-203ENST00000538686 IRX5P78411 483 aaPredicted RBP15.44■□□□□ 0.06
USP3-203ENST00000538686 GOLGA2Q08379 1002 aa15.44■□□□□ 0.06
USP3-203ENST00000538686 RGS22Q8NE09 1264 aa15.44■□□□□ 0.06
USP3-203ENST00000538686 CLUAP1Q96AJ1 413 aa15.44■□□□□ 0.06
USP3-203ENST00000538686 KIF21AQ7Z4S6 1674 aa15.43■□□□□ 0.06
USP3-203ENST00000538686 UHRF1BP1Q6BDS2 1440 aa15.43■□□□□ 0.06
USP3-203ENST00000538686 ZNF710Q8N1W2 664 aa15.43■□□□□ 0.06
USP3-203ENST00000538686 KIF3AQ9Y496 699 aa15.43■□□□□ 0.06
USP3-203ENST00000538686 EPRSP07814 1512 aaKnown RBP15.43■□□□□ 0.06
USP3-203ENST00000538686 ATP2B3Q16720 1220 aa15.42■□□□□ 0.06
USP3-203ENST00000538686 PANK3Q9H999 370 aa15.42■□□□□ 0.06
USP3-203ENST00000538686 RRP7BPQ9NSQ0 103 aa15.42■□□□□ 0.06
USP3-203ENST00000538686 KDM6BO15054 1643 aa15.42■□□□□ 0.06
USP3-203ENST00000538686 IGF1RP08069 1367 aa15.42■□□□□ 0.06
USP3-203ENST00000538686 FOXD1Q16676 465 aa15.41■□□□□ 0.06
USP3-203ENST00000538686 PDCL2Q8N4E4 241 aa15.41■□□□□ 0.06
USP3-203ENST00000538686 ZNF608Q9ULD9 1512 aaPredicted RBP15.41■□□□□ 0.06
USP3-203ENST00000538686 DDX49Q9Y6V7 483 aaKnown RBP15.4■□□□□ 0.06
USP3-203ENST00000538686 NKTRP30414 1462 aaKnown RBP15.4■□□□□ 0.06
USP3-203ENST00000538686 ZNF521Q96K83 1311 aa15.4■□□□□ 0.06
USP3-203ENST00000538686 UGGT2Q9NYU1 1516 aa15.4■□□□□ 0.06
USP3-203ENST00000538686 CARMIL1Q5VZK9 1371 aa15.4■□□□□ 0.06
USP3-203ENST00000538686 ARHGEF11O15085 1522 aa15.4■□□□□ 0.06
USP3-203ENST00000538686 SECISBP2LQ93073 1101 aaKnown RBP15.39■□□□□ 0.05
USP3-203ENST00000538686 TIGD1Q96MW7 591 aa15.39■□□□□ 0.05
USP3-203ENST00000538686 FAM193AP78312 1265 aa15.39■□□□□ 0.05
USP3-203ENST00000538686 OGFRQ9NZT2 677 aa15.39■□□□□ 0.05
USP3-203ENST00000538686 FHOD3Q2V2M9 1422 aa15.38■□□□□ 0.05
USP3-203ENST00000538686 KCNJ4P48050 445 aa15.37■□□□□ 0.05
USP3-203ENST00000538686 YY1AP1Q9H869 796 aa15.37■□□□□ 0.05
USP3-203ENST00000538686 ROCK1Q13464 1354 aa15.37■□□□□ 0.05
USP3-203ENST00000538686 SNAPC4Q5SXM2 1469 aa15.37■□□□□ 0.05
USP3-203ENST00000538686 SLFN5Q08AF3 891 aa15.37■□□□□ 0.05
USP3-203ENST00000538686 TRMT2AQ8IZ69 625 aaKnown RBP15.36■□□□□ 0.05
USP3-203ENST00000538686 CALCOCO1Q9P1Z2 691 aa15.36■□□□□ 0.05
USP3-203ENST00000538686 PLXNC1O60486 1568 aa15.35■□□□□ 0.05
USP3-203ENST00000538686 CREBRFQ8IUR6 639 aa15.35■□□□□ 0.05
USP3-203ENST00000538686 ZSCAN23Q3MJ62 389 aa15.34■□□□□ 0.05
USP3-203ENST00000538686 ARHGEF12Q9NZN5 1544 aa15.34■□□□□ 0.05
USP3-203ENST00000538686 CAMSAP2Q08AD1 1489 aa15.34■□□□□ 0.05
USP3-203ENST00000538686 PLEKHH1Q9ULM0 1364 aa15.34■□□□□ 0.05
USP3-203ENST00000538686 MMP14P50281 582 aa15.34■□□□□ 0.05
USP3-203ENST00000538686 BCCIPQ9P287 314 aaKnown RBP eCLIP15.34■□□□□ 0.05
USP3-203ENST00000538686 ZBTB22O15209 634 aa15.33■□□□□ 0.04
USP3-203ENST00000538686 PIBF1Q8WXW3 757 aa15.33■□□□□ 0.04
USP3-203ENST00000538686 ANKRD7Q92527 254 aa15.33■□□□□ 0.04
USP3-203ENST00000538686 RBSNQ9H1K0 784 aa15.33■□□□□ 0.04
USP3-203ENST00000538686 DIAPH3Q9NSV4 1193 aa15.33■□□□□ 0.04
USP3-203ENST00000538686 ATAD2BQ9ULI0 1458 aa15.33■□□□□ 0.04
USP3-203ENST00000538686 TULP2O00295 520 aa15.32■□□□□ 0.04
USP3-203ENST00000538686 NGEFQ8N5V2 710 aa15.32■□□□□ 0.04
USP3-203ENST00000538686 CARD11Q9BXL7 1154 aa15.32■□□□□ 0.04
USP3-203ENST00000538686 BCL2L12Q9HB09 334 aa15.32■□□□□ 0.04
USP3-203ENST00000538686 MFAP1P55081 439 aaKnown RBP15.32■□□□□ 0.04
USP3-203ENST00000538686 RWDD1Q9H446 243 aaPredicted RBP15.32■□□□□ 0.04
USP3-203ENST00000538686 CLGNO14967 610 aa15.31■□□□□ 0.04
USP3-203ENST00000538686 RNF216Q9NWF9 866 aaPredicted RBP15.31■□□□□ 0.04
USP3-203ENST00000538686 PDZRN3Q9UPQ7 1066 aa15.31■□□□□ 0.04
USP3-203ENST00000538686 BAG4O95429 457 aaKnown RBP15.31■□□□□ 0.04
USP3-203ENST00000538686 PTMAP06454 111 aaKnown RBP15.31■□□□□ 0.04
USP3-203ENST00000538686 CHAF1AQ13111 956 aaPredicted RBP15.31■□□□□ 0.04
USP3-203ENST00000538686 AXDND1Q5T1B0 1012 aaPredicted RBP15.31■□□□□ 0.04
USP3-203ENST00000538686 SLC4A1APQ9BWU0 796 aaKnown RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms