RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 ADGRL1O94910 1474 aa8.74□□□□□ -1.01
SYNE1-233ENST00000535896 SHANK2Q9UPX8 1470 aa8.74□□□□□ -1.01
SYNE1-233ENST00000535896 EIF4G2P78344 907 aaKnown RBP eCLIP8.74□□□□□ -1.01
SYNE1-233ENST00000535896 CFDP1Q9UEE9 299 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-233ENST00000535896 ABCC1P33527 1531 aa8.74□□□□□ -1.01
SYNE1-233ENST00000535896 KDM5DQ9BY66 1539 aa8.74□□□□□ -1.01
SYNE1-233ENST00000535896 ARHGEF12Q9NZN5 1544 aa8.74□□□□□ -1.01
SYNE1-233ENST00000535896 SPATA31E1Q6ZUB1 1445 aa8.74□□□□□ -1.01
SYNE1-233ENST00000535896 ANKRD30BQ9BXX2 1392 aa8.74□□□□□ -1.01
SYNE1-233ENST00000535896 PYGBP11216 843 aa8.73□□□□□ -1.01
SYNE1-233ENST00000535896 KIAA1107Q9UPP5 1409 aa8.73□□□□□ -1.01
SYNE1-233ENST00000535896 ARID4BQ4LE39 1312 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-233ENST00000535896 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.73□□□□□ -1.01
SYNE1-233ENST00000535896 SAMD9LQ8IVG5 1584 aa8.72□□□□□ -1.01
SYNE1-233ENST00000535896 ABCC5O15440 1437 aa8.72□□□□□ -1.01
SYNE1-233ENST00000535896 SCAPERQ9BY12 1400 aa8.72□□□□□ -1.01
SYNE1-233ENST00000535896 CCDC7Q96M83 1385 aa8.72□□□□□ -1.01
SYNE1-233ENST00000535896 WASHC2AQ641Q2 1341 aa8.72□□□□□ -1.01
SYNE1-233ENST00000535896 ZNF518AQ6AHZ1 1483 aa8.71□□□□□ -1.01
SYNE1-233ENST00000535896 POGZQ7Z3K3 1410 aa8.71□□□□□ -1.01
SYNE1-233ENST00000535896 RICTORQ6R327 1708 aa8.71□□□□□ -1.01
SYNE1-233ENST00000535896 PCDHB8Q9UN66 801 aa8.71□□□□□ -1.02
SYNE1-233ENST00000535896 ZMYM4Q5VZL5 1548 aa8.71□□□□□ -1.02
SYNE1-233ENST00000535896 CAMSAP2Q08AD1 1489 aa8.7□□□□□ -1.02
SYNE1-233ENST00000535896 COL17A1Q9UMD9 1497 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-233ENST00000535896 KDM5CP41229 1560 aa8.7□□□□□ -1.02
SYNE1-233ENST00000535896 ZBED9Q6R2W3 1325 aa8.7□□□□□ -1.02
SYNE1-233ENST00000535896 FANCIQ9NVI1 1328 aa8.7□□□□□ -1.02
SYNE1-233ENST00000535896 SYCP2Q9BX26 1530 aa8.7□□□□□ -1.02
SYNE1-233ENST00000535896 HSPA5P11021 654 aaKnown RBP8.7□□□□□ -1.02
SYNE1-233ENST00000535896 MPHOSPH9Q99550 1183 aa8.7□□□□□ -1.02
SYNE1-233ENST00000535896 ZNF777Q9ULD5 760 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-233ENST00000535896 PZPP20742 1482 aa8.7□□□□□ -1.02
SYNE1-233ENST00000535896 ROCK2O75116 1388 aaKnown RBP8.69□□□□□ -1.02
SYNE1-233ENST00000535896 ARHGEF5Q12774 1597 aa8.69□□□□□ -1.02
SYNE1-233ENST00000535896 FRMPD1Q5SYB0 1578 aa8.69□□□□□ -1.02
SYNE1-233ENST00000535896 E9PCH4 1651 aa8.69□□□□□ -1.02
SYNE1-233ENST00000535896 MAGI2Q86UL8 1455 aa8.69□□□□□ -1.02
SYNE1-233ENST00000535896 MMRN1Q13201 1228 aa8.69□□□□□ -1.02
SYNE1-233ENST00000535896 RSPH4AQ5TD94 716 aa8.69□□□□□ -1.02
SYNE1-233ENST00000535896 SPNS2Q8IVW8 549 aa8.69□□□□□ -1.02
SYNE1-233ENST00000535896 UHRF1BP1Q6BDS2 1440 aa8.69□□□□□ -1.02
SYNE1-233ENST00000535896 KTN1Q86UP2 1357 aaKnown RBP8.68□□□□□ -1.02
SYNE1-233ENST00000535896 TRIM52Q96A61 297 aa8.68□□□□□ -1.02
SYNE1-233ENST00000535896 CCDC141Q6ZP82 1450 aa8.67□□□□□ -1.02
SYNE1-233ENST00000535896 RALGAPBQ86X10 1494 aa8.67□□□□□ -1.02
SYNE1-233ENST00000535896 LAMC1P11047 1609 aa8.67□□□□□ -1.02
SYNE1-233ENST00000535896 RAPGEF3O95398 923 aa8.67□□□□□ -1.02
SYNE1-233ENST00000535896 HNRNPUQ00839 825 aaKnown RBP eCLIP8.67□□□□□ -1.02
SYNE1-233ENST00000535896 HECW2Q9P2P5 1572 aa8.67□□□□□ -1.02
SYNE1-233ENST00000535896 MYT1LQ9UL68 1186 aa8.67□□□□□ -1.02
SYNE1-233ENST00000535896 TRAPPC8Q9Y2L5 1435 aa8.67□□□□□ -1.02
SYNE1-233ENST00000535896 RBM19Q9Y4C8 960 aaKnown RBP8.67□□□□□ -1.02
SYNE1-233ENST00000535896 MLH3Q9UHC1 1453 aa8.66□□□□□ -1.02
SYNE1-233ENST00000535896 ZNF644Q9H582 1327 aaPredicted RBP8.66□□□□□ -1.02
SYNE1-233ENST00000535896 MARVELD3Q96A59 401 aa8.66□□□□□ -1.02
SYNE1-233ENST00000535896 PRKRIP1Q9H875 184 aaPredicted RBP8.66□□□□□ -1.02
SYNE1-233ENST00000535896 ARHGEF40Q8TER5 1519 aa8.66□□□□□ -1.02
SYNE1-233ENST00000535896 ZFYVE16Q7Z3T8 1539 aa8.65□□□□□ -1.02
SYNE1-233ENST00000535896 L3MBTL2Q969R5 705 aa8.65□□□□□ -1.02
SYNE1-233ENST00000535896 RRP7BPQ9NSQ0 103 aa8.65□□□□□ -1.02
SYNE1-233ENST00000535896 RTEL1-TNFRSF6BF6WH68 1400 aa8.65□□□□□ -1.03
SYNE1-233ENST00000535896 HNRNPMP52272 730 aaKnown RBP eCLIP8.64□□□□□ -1.03
SYNE1-233ENST00000535896 PPP4R2Q9NY27 417 aa8.64□□□□□ -1.03
SYNE1-233ENST00000535896 ANKRD30AQ9BXX3 1397 aa8.64□□□□□ -1.03
SYNE1-233ENST00000535896 INO80Q9ULG1 1556 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-233ENST00000535896 MAST1Q9Y2H9 1570 aa8.64□□□□□ -1.03
SYNE1-233ENST00000535896 SPAG9O60271 1321 aaKnown RBP8.64□□□□□ -1.03
SYNE1-233ENST00000535896 SMG6Q86US8 1419 aaKnown RBP8.64□□□□□ -1.03
SYNE1-233ENST00000535896 ATP7AQ04656 1500 aa8.64□□□□□ -1.03
SYNE1-233ENST00000535896 BCORL1Q5H9F3 1711 aa8.64□□□□□ -1.03
SYNE1-233ENST00000535896 AFAP1Q8N556 730 aa8.63□□□□□ -1.03
SYNE1-233ENST00000535896 BCANQ96GW7 911 aa8.63□□□□□ -1.03
SYNE1-233ENST00000535896 L3MBTL3Q96JM7 780 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-233ENST00000535896 HIRIP3Q9BW71 556 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-233ENST00000535896 FBXO3Q9UK99 471 aa8.63□□□□□ -1.03
SYNE1-233ENST00000535896 KIDINS220Q9ULH0 1771 aa8.63□□□□□ -1.03
SYNE1-233ENST00000535896 REREQ9P2R6 1566 aa8.62□□□□□ -1.03
SYNE1-233ENST00000535896 TSPY4P0CV99 314 aa8.62□□□□□ -1.03
SYNE1-233ENST00000535896 TSPY10P0CW01 314 aa8.62□□□□□ -1.03
SYNE1-233ENST00000535896 C3orf67Q6ZVT6 689 aa8.62□□□□□ -1.03
SYNE1-233ENST00000535896 PDCD7Q8N8D1 485 aaKnown RBP8.62□□□□□ -1.03
SYNE1-233ENST00000535896 C9orf84Q5VXU9 1444 aa8.62□□□□□ -1.03
SYNE1-233ENST00000535896 DIP2CQ9Y2E4 1556 aa8.62□□□□□ -1.03
SYNE1-233ENST00000535896 INSRP06213 1382 aa8.62□□□□□ -1.03
SYNE1-233ENST00000535896 GOLGA2Q08379 1002 aa8.61□□□□□ -1.03
SYNE1-233ENST00000535896 ZNF467Q7Z7K2 595 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-233ENST00000535896 EIF2AK4Q9P2K8 1649 aaKnown RBP8.61□□□□□ -1.03
SYNE1-233ENST00000535896 YEATS2Q9ULM3 1422 aa8.61□□□□□ -1.03
SYNE1-233ENST00000535896 KIF7Q2M1P5 1343 aa8.61□□□□□ -1.03
SYNE1-233ENST00000535896 UNC13BO14795 1591 aa8.61□□□□□ -1.03
SYNE1-233ENST00000535896 ATP10AO60312 1499 aa8.61□□□□□ -1.03
SYNE1-233ENST00000535896 DHX29Q7Z478 1369 aaKnown RBP8.61□□□□□ -1.03
SYNE1-233ENST00000535896 ABCA6Q8N139 1617 aa8.61□□□□□ -1.03
SYNE1-233ENST00000535896 MKRN3Q13064 507 aaKnown RBP8.61□□□□□ -1.03
SYNE1-233ENST00000535896 CHIC2Q9UKJ5 165 aa8.61□□□□□ -1.03
SYNE1-233ENST00000535896 ANKRD50Q9ULJ7 1429 aa8.6□□□□□ -1.03
SYNE1-233ENST00000535896 PLXNC1O60486 1568 aa8.6□□□□□ -1.03
SYNE1-233ENST00000535896 USP47Q96K76 1375 aa8.6□□□□□ -1.03
SYNE1-233ENST00000535896 GSE1Q14687 1217 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms