RNA–Protein interactions for RNA: ENST00000533818.5

CSDE1-215, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-215ENST00000533818 NWD1Q149M9 1564 aa17.32■□□□□ 0.36
CSDE1-215ENST00000533818 CFAP65Q6ZU64 1925 aaKnown RBP17.31■□□□□ 0.36
CSDE1-215ENST00000533818 KDM5AP29375 1690 aaKnown RBP17.3■□□□□ 0.36
CSDE1-215ENST00000533818 BRINP3Q76B58 766 aa17.3■□□□□ 0.36
CSDE1-215ENST00000533818 C19orf44Q9H6X5 657 aa17.3■□□□□ 0.36
CSDE1-215ENST00000533818 NCOA3Q9Y6Q9 1424 aa17.29■□□□□ 0.36
CSDE1-215ENST00000533818 DIP2AQ14689 1571 aa17.28■□□□□ 0.36
CSDE1-215ENST00000533818 LRRC59Q96AG4 307 aaKnown RBP17.28■□□□□ 0.36
CSDE1-215ENST00000533818 CAMSAP2Q08AD1 1489 aa17.28■□□□□ 0.36
CSDE1-215ENST00000533818 PIK3C2BO00750 1634 aa17.26■□□□□ 0.35
CSDE1-215ENST00000533818 ADAMTS2O95450 1211 aa17.26■□□□□ 0.35
CSDE1-215ENST00000533818 IDI1Q13907 227 aa17.26■□□□□ 0.35
CSDE1-215ENST00000533818 EFCAB6Q5THR3 1501 aa17.26■□□□□ 0.35
CSDE1-215ENST00000533818 EP400Q96L91 3159 aa17.26■□□□□ 0.35
CSDE1-215ENST00000533818 SETD5Q9C0A6 1442 aa17.25■□□□□ 0.35
CSDE1-215ENST00000533818 USP21Q9UK80 565 aa17.25■□□□□ 0.35
CSDE1-215ENST00000533818 TRPC5Q9UL62 973 aaPredicted RBP17.25■□□□□ 0.35
CSDE1-215ENST00000533818 ARHGAP31Q2M1Z3 1444 aa17.24■□□□□ 0.35
CSDE1-215ENST00000533818 LRP5O75197 1615 aa17.22■□□□□ 0.35
CSDE1-215ENST00000533818 IFFO2Q5TF58 517 aa17.22■□□□□ 0.35
CSDE1-215ENST00000533818 YY1P25490 414 aa17.21■□□□□ 0.35
CSDE1-215ENST00000533818 MAST1Q9Y2H9 1570 aa17.2■□□□□ 0.34
CSDE1-215ENST00000533818 CEP152O94986 1710 aa17.2■□□□□ 0.34
CSDE1-215ENST00000533818 MROH1Q8NDA8 1641 aa17.2■□□□□ 0.34
CSDE1-215ENST00000533818 PNPLA6Q8IY17 1366 aa17.19■□□□□ 0.34
CSDE1-215ENST00000533818 DEFB132Q7Z7B7 95 aa17.19■□□□□ 0.34
CSDE1-215ENST00000533818 TBX22Q9Y458 520 aa17.18■□□□□ 0.34
CSDE1-215ENST00000533818 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.18■□□□□ 0.34
CSDE1-215ENST00000533818 PPP1R15AO75807 674 aaPredicted RBP17.17■□□□□ 0.34
CSDE1-215ENST00000533818 BLMP54132 1417 aaPredicted RBP17.16■□□□□ 0.34
CSDE1-215ENST00000533818 FNBP4Q8N3X1 1017 aaPredicted RBP17.16■□□□□ 0.34
CSDE1-215ENST00000533818 DDX17Q92841 729 aaKnown RBP17.16■□□□□ 0.34
CSDE1-215ENST00000533818 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.16■□□□□ 0.343e-14■□□□□ 10.8
CSDE1-215ENST00000533818 CHD2O14647 1828 aaKnown RBP17.16■□□□□ 0.34
CSDE1-215ENST00000533818 PLEKHG1Q9ULL1 1385 aa17.15■□□□□ 0.34
CSDE1-215ENST00000533818 CEP162Q5TB80 1403 aa17.15■□□□□ 0.34
CSDE1-215ENST00000533818 EIF2AK4Q9P2K8 1649 aaKnown RBP17.15■□□□□ 0.34
CSDE1-215ENST00000533818 PSDA5PKW4 1024 aaPredicted RBP17.15■□□□□ 0.34
CSDE1-215ENST00000533818 HRCP23327 699 aa17.15■□□□□ 0.34
CSDE1-215ENST00000533818 ASXL1Q8IXJ9 1541 aa17.15■□□□□ 0.34
CSDE1-215ENST00000533818 SF3B2Q13435 895 aaKnown RBP17.14■□□□□ 0.33
CSDE1-215ENST00000533818 ATRNO75882 1429 aa17.13■□□□□ 0.33
CSDE1-215ENST00000533818 HDGFP51858 240 aaKnown RBP17.13■□□□□ 0.33
CSDE1-215ENST00000533818 ARHGEF5Q12774 1597 aa17.13■□□□□ 0.33
CSDE1-215ENST00000533818 SLC52A1Q9NWF4 448 aa17.1■□□□□ 0.33
CSDE1-215ENST00000533818 EHBP1L1Q8N3D4 1523 aa17.1■□□□□ 0.33
CSDE1-215ENST00000533818 ADGRB3O60242 1522 aa17.08■□□□□ 0.32
CSDE1-215ENST00000533818 GJD4Q96KN9 370 aaPredicted RBP17.08■□□□□ 0.32
CSDE1-215ENST00000533818 NHSL1Q5SYE7 1610 aa17.07■□□□□ 0.32
CSDE1-215ENST00000533818 DCCP43146 1447 aa17.07■□□□□ 0.32
CSDE1-215ENST00000533818 KANK1Q14678 1352 aa17.07■□□□□ 0.32
CSDE1-215ENST00000533818 AMOTL2Q9Y2J4 779 aa17.07■□□□□ 0.32
CSDE1-215ENST00000533818 ZFYVE9O95405 1425 aa17.06■□□□□ 0.32
CSDE1-215ENST00000533818 MST1RQ04912 1400 aa17.06■□□□□ 0.32
CSDE1-215ENST00000533818 RIMS2Q9UQ26 1411 aa17.05■□□□□ 0.32
CSDE1-215ENST00000533818 PIK3R4Q99570 1358 aa17.05■□□□□ 0.32
CSDE1-215ENST00000533818 DUOX2Q9NRD8 1548 aa17.05■□□□□ 0.32
CSDE1-215ENST00000533818 PTCH1Q13635 1447 aa17.04■□□□□ 0.32
CSDE1-215ENST00000533818 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.03■□□□□ 0.32
CSDE1-215ENST00000533818 NOS1P29475 1434 aa17.03■□□□□ 0.32
CSDE1-215ENST00000533818 ADAMTS13Q76LX8 1427 aa17.02■□□□□ 0.31
CSDE1-215ENST00000533818 BCL9LQ86UU0 1499 aa17.01■□□□□ 0.31
CSDE1-215ENST00000533818 RRP7BPQ9NSQ0 103 aa17■□□□□ 0.31
CSDE1-215ENST00000533818 KIF15Q9NS87 1388 aa17■□□□□ 0.31
CSDE1-215ENST00000533818 SENP3-EIF4A1A0A087X0R7 540 aa16.98■□□□□ 0.31
CSDE1-215ENST00000533818 BAG6P46379 1132 aa16.98■□□□□ 0.31
CSDE1-215ENST00000533818 R3HDM1Q15032 1099 aaKnown RBP16.98■□□□□ 0.31
CSDE1-215ENST00000533818 SOS2Q07890 1332 aaPredicted RBP16.97■□□□□ 0.31
CSDE1-215ENST00000533818 PTPRUQ92729 1446 aa16.97■□□□□ 0.31
CSDE1-215ENST00000533818 ERBINQ96RT1 1412 aa16.97■□□□□ 0.31
CSDE1-215ENST00000533818 CHGAP10645 457 aaKnown RBP16.95■□□□□ 0.3
CSDE1-215ENST00000533818 LMTK2Q8IWU2 1503 aa16.95■□□□□ 0.3
CSDE1-215ENST00000533818 UNC13BO14795 1591 aa16.94■□□□□ 0.3
CSDE1-215ENST00000533818 SEPT12Q8IYM1 358 aa16.94■□□□□ 0.3
CSDE1-215ENST00000533818 TRPM2O94759 1503 aa16.93■□□□□ 0.3
CSDE1-215ENST00000533818 DCAF8L1A6NGE4 600 aa16.93■□□□□ 0.3
CSDE1-215ENST00000533818 RALGAPBQ86X10 1494 aa16.93■□□□□ 0.3
CSDE1-215ENST00000533818 UNC5CLQ8IV45 518 aa16.92■□□□□ 0.3
CSDE1-215ENST00000533818 ORAI2Q96SN7 254 aa16.91■□□□□ 0.3
CSDE1-215ENST00000533818 KRT27Q7Z3Y8 459 aa16.9■□□□□ 0.3
CSDE1-215ENST00000533818 C1orf167Q5SNV9 1468 aa16.9■□□□□ 0.3
CSDE1-215ENST00000533818 EN1Q05925 392 aaPredicted RBP16.89■□□□□ 0.29
CSDE1-215ENST00000533818 ADGRL3Q9HAR2 1447 aa16.88■□□□□ 0.29
CSDE1-215ENST00000533818 MYOM2P54296 1465 aa16.88■□□□□ 0.29
CSDE1-215ENST00000533818 MYOM3Q5VTT5 1437 aa16.87■□□□□ 0.29
CSDE1-215ENST00000533818 GLI3P10071 1580 aa16.87■□□□□ 0.29
CSDE1-215ENST00000533818 TMEM131LA2VDJ0 1609 aa16.87■□□□□ 0.29
CSDE1-215ENST00000533818 MYO5BQ9ULV0 1848 aa16.86■□□□□ 0.29
CSDE1-215ENST00000533818 ZNF784Q8NCA9 323 aaPredicted RBP16.85■□□□□ 0.29
CSDE1-215ENST00000533818 SPHKAPQ2M3C7 1700 aa16.84■□□□□ 0.29
CSDE1-215ENST00000533818 ONECUT3O60422 494 aaPredicted RBP16.84■□□□□ 0.29
CSDE1-215ENST00000533818 LAMC1P11047 1609 aa16.84■□□□□ 0.29
CSDE1-215ENST00000533818 COL22A1Q8NFW1 1626 aaPredicted RBP16.84■□□□□ 0.29
CSDE1-215ENST00000533818 GCC2Q8IWJ2 1684 aa16.84■□□□□ 0.29
CSDE1-215ENST00000533818 BRWD3Q6RI45 1802 aa16.84■□□□□ 0.29
CSDE1-215ENST00000533818 RPRD2Q5VT52 1461 aaKnown RBP16.83■□□□□ 0.28
CSDE1-215ENST00000533818 C1QTNF8P60827 252 aa16.82■□□□□ 0.28
CSDE1-215ENST00000533818 CCDC9Q9Y3X0 531 aaKnown RBP16.82■□□□□ 0.28
CSDE1-215ENST00000533818 PPP1R1BQ9UD71 204 aaPredicted RBP16.81■□□□□ 0.28
CSDE1-215ENST00000533818 XRN1Q8IZH2 1706 aaKnown RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms