RNA–Protein interactions for RNA: ENST00000530906.1

PCF11-205, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 628 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-205ENST00000530906 NBPF3Q9H094 633 aa8.32□□□□□ -1.08
PCF11-205ENST00000530906 LRRC9Q6ZRR7 1453 aa8.32□□□□□ -1.08
PCF11-205ENST00000530906 PCF11O94913 1555 aaKnown RBP8.31□□□□□ -1.08
PCF11-205ENST00000530906 RABGEF1Q9UJ41 708 aa8.31□□□□□ -1.08
PCF11-205ENST00000530906 TDRD9Q8NDG6 1382 aaKnown RBP8.31□□□□□ -1.08
PCF11-205ENST00000530906 GOLGA8CPA6NN73 597 aa8.3□□□□□ -1.08
PCF11-205ENST00000530906 DPYSL4O14531 572 aa8.3□□□□□ -1.08
PCF11-205ENST00000530906 BBXQ8WY36 941 aaPredicted RBP8.3□□□□□ -1.08
PCF11-205ENST00000530906 CCNB3Q8WWL7 1395 aa8.3□□□□□ -1.08
PCF11-205ENST00000530906 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.3□□□□□ -1.08
PCF11-205ENST00000530906 RANGAP1P46060 587 aaPredicted RBP8.29□□□□□ -1.08
PCF11-205ENST00000530906 IFFO2Q5TF58 517 aa8.29□□□□□ -1.08
PCF11-205ENST00000530906 IQGAP2Q13576 1575 aa8.28□□□□□ -1.08
PCF11-205ENST00000530906 SNAPC4Q5SXM2 1469 aa8.27□□□□□ -1.09
PCF11-205ENST00000530906 CCDC18Q5T9S5 1454 aa8.27□□□□□ -1.09
PCF11-205ENST00000530906 MAGI1Q96QZ7 1491 aaPredicted RBP8.27□□□□□ -1.09
PCF11-205ENST00000530906 C6orf132Q5T0Z8 1188 aa8.27□□□□□ -1.09
PCF11-205ENST00000530906 EPAS1Q99814 870 aa8.27□□□□□ -1.09
PCF11-205ENST00000530906 FHOD3Q2V2M9 1422 aa8.27□□□□□ -1.09
PCF11-205ENST00000530906 TTBK1Q5TCY1 1321 aaPredicted RBP8.27□□□□□ -1.09
PCF11-205ENST00000530906 ERCC6Q03468 1493 aa8.26□□□□□ -1.09
PCF11-205ENST00000530906 UGGT2Q9NYU1 1516 aa8.26□□□□□ -1.09
PCF11-205ENST00000530906 KANK4Q5T7N3 995 aaPredicted RBP8.26□□□□□ -1.09
PCF11-205ENST00000530906 ONECUT3O60422 494 aaPredicted RBP8.25□□□□□ -1.09
PCF11-205ENST00000530906 LAPTM4BQ86VI4 370 aa8.25□□□□□ -1.09
PCF11-205ENST00000530906 KIAA1468Q9P260 1216 aa8.25□□□□□ -1.09
PCF11-205ENST00000530906 HECW1Q76N89 1606 aa8.25□□□□□ -1.09
PCF11-205ENST00000530906 EHBP1L1Q8N3D4 1523 aa8.24□□□□□ -1.09
PCF11-205ENST00000530906 KIAA0586Q9BVV6 1533 aa8.24□□□□□ -1.09
PCF11-205ENST00000530906 EIF4G3O43432 1585 aaKnown RBP8.24□□□□□ -1.09
PCF11-205ENST00000530906 ANKK1Q8NFD2 765 aa8.23□□□□□ -1.09
PCF11-205ENST00000530906 DDX12PQ92771 950 aa8.23□□□□□ -1.09
PCF11-205ENST00000530906 GRIN2AQ12879 1464 aa8.22□□□□□ -1.09
PCF11-205ENST00000530906 BCAMP50895 628 aa8.22□□□□□ -1.09
PCF11-205ENST00000530906 SUPT6HQ7KZ85 1726 aaKnown RBP8.22□□□□□ -1.09
PCF11-205ENST00000530906 A0A0G2JS52 829 aa8.21□□□□□ -1.1
PCF11-205ENST00000530906 SOWAHBA6NEL2 793 aa8.21□□□□□ -1.1
PCF11-205ENST00000530906 TRIM6-TRIM34B2RNG4 842 aa8.21□□□□□ -1.1
PCF11-205ENST00000530906 RGS20O76081 388 aa8.21□□□□□ -1.1
PCF11-205ENST00000530906 RBM33Q96EV2 1170 aaKnown RBP8.21□□□□□ -1.1
PCF11-205ENST00000530906 ZFRQ96KR1 1074 aaKnown RBP8.21□□□□□ -1.1
PCF11-205ENST00000530906 SYNJ2O15056 1496 aa8.2□□□□□ -1.1
PCF11-205ENST00000530906 PDIA6Q15084 440 aa8.2□□□□□ -1.1
PCF11-205ENST00000530906 SPRYD3Q8NCJ5 442 aa8.2□□□□□ -1.1
PCF11-205ENST00000530906 MTUS2Q5JR59 1369 aa8.2□□□□□ -1.1
PCF11-205ENST00000530906 PHLDB1Q86UU1 1377 aa8.2□□□□□ -1.1
PCF11-205ENST00000530906 ZNF608Q9ULD9 1512 aaPredicted RBP8.19□□□□□ -1.1
PCF11-205ENST00000530906 ITGBL1O95965 494 aaPredicted RBP8.19□□□□□ -1.1
PCF11-205ENST00000530906 SEPT9Q9UHD8 586 aaPredicted RBP8.19□□□□□ -1.1
PCF11-205ENST00000530906 ACIN1Q9UKV3 1341 aaKnown RBP8.19□□□□□ -1.1
PCF11-205ENST00000530906 DHX57Q6P158 1386 aaKnown RBP8.19□□□□□ -1.1
PCF11-205ENST00000530906 FGD6Q6ZV73 1430 aa8.19□□□□□ -1.1
PCF11-205ENST00000530906 ARHGEF11O15085 1522 aa8.19□□□□□ -1.1
PCF11-205ENST00000530906 KIAA0556O60303 1618 aa8.18□□□□□ -1.1
PCF11-205ENST00000530906 EN1Q05925 392 aaPredicted RBP8.18□□□□□ -1.1
PCF11-205ENST00000530906 LRRIQ1Q96JM4 1722 aa8.17□□□□□ -1.1
PCF11-205ENST00000530906 SPDYE16A6NNV3 312 aaPredicted RBP8.17□□□□□ -1.1
PCF11-205ENST00000530906 NBR1Q14596 966 aa8.17□□□□□ -1.1
PCF11-205ENST00000530906 FAM98CQ17RN3 349 aaKnown RBP8.17□□□□□ -1.1
PCF11-205ENST00000530906 TSR1Q2NL82 804 aaKnown RBP8.17□□□□□ -1.1
PCF11-205ENST00000530906 MYOM3Q5VTT5 1437 aa8.17□□□□□ -1.1
PCF11-205ENST00000530906 SETD5Q9C0A6 1442 aa8.17□□□□□ -1.1
PCF11-205ENST00000530906 EPRSP07814 1512 aaKnown RBP8.16□□□□□ -1.1
PCF11-205ENST00000530906 NUP160Q12769 1436 aa8.16□□□□□ -1.1
PCF11-205ENST00000530906 NCOA2Q15596 1464 aa8.16□□□□□ -1.1
PCF11-205ENST00000530906 P3H3Q8IVL6 736 aa8.16□□□□□ -1.1
PCF11-205ENST00000530906 WBP1LQ9NX94 342 aa8.16□□□□□ -1.1
PCF11-205ENST00000530906 TSKSQ9UJT2 592 aa8.16□□□□□ -1.1
PCF11-205ENST00000530906 ARIH1Q9Y4X5 557 aaPredicted RBP8.16□□□□□ -1.1
PCF11-205ENST00000530906 DISP1Q96F81 1524 aa8.15□□□□□ -1.1
PCF11-205ENST00000530906 AKNAQ7Z591 1439 aa8.15□□□□□ -1.1
PCF11-205ENST00000530906 MIA2Q96PC5 1412 aa8.15□□□□□ -1.1
PCF11-205ENST00000530906 MAP3K7O43318 606 aa8.15□□□□□ -1.1
PCF11-205ENST00000530906 PRIM1P49642 420 aaKnown RBP8.15□□□□□ -1.1
PCF11-205ENST00000530906 NYAP1Q6ZVC0 841 aa8.15□□□□□ -1.1
PCF11-205ENST00000530906 TCOF1Q13428 1488 aaKnown RBP8.14□□□□□ -1.11
PCF11-205ENST00000530906 CARMIL2Q6F5E8 1435 aa8.14□□□□□ -1.11
PCF11-205ENST00000530906 E2F4Q16254 413 aa8.14□□□□□ -1.11
PCF11-205ENST00000530906 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.14□□□□□ -1.11
PCF11-205ENST00000530906 RAPGEF6Q8TEU7 1601 aa8.14□□□□□ -1.11
PCF11-205ENST00000530906 TIMELESSQ9UNS1 1208 aa8.13□□□□□ -1.11
PCF11-205ENST00000530906 CEP170Q5SW79 1584 aa8.13□□□□□ -1.11
PCF11-205ENST00000530906 HFM1A2PYH4 1435 aa8.12□□□□□ -1.11
PCF11-205ENST00000530906 RAB3GAP2Q9H2M9 1393 aa8.12□□□□□ -1.11
PCF11-205ENST00000530906 PTPN23Q9H3S7 1636 aa8.12□□□□□ -1.11
PCF11-205ENST00000530906 AMER1Q5JTC6 1135 aaPredicted RBP8.12□□□□□ -1.11
PCF11-205ENST00000530906 PACS2Q86VP3 889 aa8.12□□□□□ -1.11
PCF11-205ENST00000530906 RTN4Q9NQC3 1192 aaKnown RBP8.12□□□□□ -1.11
PCF11-205ENST00000530906 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.12□□□□□ -1.11
PCF11-205ENST00000530906 ATP1B4Q9UN42 357 aaPredicted RBP8.12□□□□□ -1.11
PCF11-205ENST00000530906 CHMP7Q8WUX9 453 aaPredicted RBP8.11□□□□□ -1.11
PCF11-205ENST00000530906 FAM198AQ9UFP1 575 aa8.11□□□□□ -1.11
PCF11-205ENST00000530906 TSR3Q9UJK0 312 aaKnown RBP8.11□□□□□ -1.11
PCF11-205ENST00000530906 CDK11AQ9UQ88 783 aaPredicted RBP8.11□□□□□ -1.11
PCF11-205ENST00000530906 C3orf80F5H4A9 247 aa8.1□□□□□ -1.11
PCF11-205ENST00000530906 PRSS12P56730 875 aa8.1□□□□□ -1.11
PCF11-205ENST00000530906 FAM50AQ14320 339 aaKnown RBP8.1□□□□□ -1.11
PCF11-205ENST00000530906 PAXIP1Q6ZW49 1069 aaPredicted RBP8.1□□□□□ -1.11
PCF11-205ENST00000530906 CDCA7LQ96GN5 454 aa8.1□□□□□ -1.11
PCF11-205ENST00000530906 LRCH3Q96II8 777 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms