RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 PDE4AP27815 886 aa25.7■■□□□ 1.7
PCF11-203ENST00000530304 SYNMO15061 1565 aa25.7■■□□□ 1.7
PCF11-203ENST00000530304 WDR43Q15061 677 aaKnown RBP eCLIP25.69■■□□□ 1.72e-6■□□□□ 10.4
PCF11-203ENST00000530304 CLASP1Q7Z460 1538 aa25.69■■□□□ 1.7
PCF11-203ENST00000530304 MS4A1P11836 297 aa25.68■■□□□ 1.7
PCF11-203ENST00000530304 DEPDC5O75140 1603 aa25.68■■□□□ 1.7
PCF11-203ENST00000530304 ARAP3Q8WWN8 1544 aa25.67■■□□□ 1.7
PCF11-203ENST00000530304 BACH2Q9BYV9 841 aa25.66■■□□□ 1.7
PCF11-203ENST00000530304 PLEKHH1Q9ULM0 1364 aa25.66■■□□□ 1.7
PCF11-203ENST00000530304 TET3O43151 1660 aa25.65■■□□□ 1.7
PCF11-203ENST00000530304 ASXL1Q8IXJ9 1541 aa25.65■■□□□ 1.7
PCF11-203ENST00000530304 NPM2Q86SE8 214 aaKnown RBP25.65■■□□□ 1.7
PCF11-203ENST00000530304 DEKP35659 375 aaKnown RBP25.64■■□□□ 1.7
PCF11-203ENST00000530304 C20orf194Q5TEA3 1177 aa25.63■■□□□ 1.69
PCF11-203ENST00000530304 DUSP27Q5VZP5 1158 aa25.63■■□□□ 1.69
PCF11-203ENST00000530304 KANK1Q14678 1352 aa25.63■■□□□ 1.69
PCF11-203ENST00000530304 EIF3AQ14152 1382 aaKnown RBP25.62■■□□□ 1.69
PCF11-203ENST00000530304 ZNF521Q96K83 1311 aa25.61■■□□□ 1.69
PCF11-203ENST00000530304 MYOM1P52179 1685 aa25.61■■□□□ 1.69
PCF11-203ENST00000530304 PIK3C2GO75747 1445 aa25.6■■□□□ 1.69
PCF11-203ENST00000530304 KIF3BO15066 747 aa25.6■■□□□ 1.69
PCF11-203ENST00000530304 VWDEQ8N2E2 1590 aa25.6■■□□□ 1.69
PCF11-203ENST00000530304 ATP7AQ04656 1500 aa25.6■■□□□ 1.69
PCF11-203ENST00000530304 NPC1L1Q9UHC9 1359 aa25.59■■□□□ 1.69
PCF11-203ENST00000530304 GOLGA2Q08379 1002 aa25.59■■□□□ 1.69
PCF11-203ENST00000530304 KIAA1210Q9ULL0 1709 aa25.58■■□□□ 1.69
PCF11-203ENST00000530304 INO80Q9ULG1 1556 aaPredicted RBP25.57■■□□□ 1.68
PCF11-203ENST00000530304 FANCAO15360 1455 aa25.57■■□□□ 1.68
PCF11-203ENST00000530304 SKAP1Q86WV1 359 aa25.56■■□□□ 1.68
PCF11-203ENST00000530304 KDM5AP29375 1690 aaKnown RBP25.56■■□□□ 1.68
PCF11-203ENST00000530304 CFAP70Q5T0N1 1121 aa25.55■■□□□ 1.68
PCF11-203ENST00000530304 NEURL4Q96JN8 1562 aa25.54■■□□□ 1.68
PCF11-203ENST00000530304 ABCA9Q8IUA7 1624 aa25.54■■□□□ 1.68
PCF11-203ENST00000530304 SLFN5Q08AF3 891 aa25.52■■□□□ 1.68
PCF11-203ENST00000530304 CCDC146Q8IYE0 955 aa25.52■■□□□ 1.68
PCF11-203ENST00000530304 KDM2BQ8NHM5 1336 aa25.52■■□□□ 1.68
PCF11-203ENST00000530304 UGGT1Q9NYU2 1555 aa25.51■■□□□ 1.68
PCF11-203ENST00000530304 MAP3K4Q9Y6R4 1608 aa25.51■■□□□ 1.68
PCF11-203ENST00000530304 ADGRF5Q8IZF2 1346 aa25.51■■□□□ 1.67
PCF11-203ENST00000530304 SLC24A1O60721 1099 aa25.51■■□□□ 1.67
PCF11-203ENST00000530304 MYOM2P54296 1465 aa25.5■■□□□ 1.67
PCF11-203ENST00000530304 ERVK-7P63135 1459 aa25.49■■□□□ 1.67
PCF11-203ENST00000530304 MROH1Q8NDA8 1641 aa25.49■■□□□ 1.67
PCF11-203ENST00000530304 ADGRL1O94910 1474 aa25.49■■□□□ 1.67
PCF11-203ENST00000530304 ABCA6Q8N139 1617 aa25.49■■□□□ 1.67
PCF11-203ENST00000530304 RTL5Q5HYW3 569 aaPredicted RBP25.48■■□□□ 1.67
PCF11-203ENST00000530304 TRMT2AQ8IZ69 625 aaKnown RBP25.48■■□□□ 1.67
PCF11-203ENST00000530304 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.48■■□□□ 1.67
PCF11-203ENST00000530304 APAF1O14727 1248 aa25.47■■□□□ 1.67
PCF11-203ENST00000530304 CENPQQ7L2Z9 268 aaPredicted RBP25.47■■□□□ 1.67
PCF11-203ENST00000530304 CARD14Q9BXL6 1004 aa25.47■■□□□ 1.67
PCF11-203ENST00000530304 KIF1BO60333 1816 aa25.46■■□□□ 1.67
PCF11-203ENST00000530304 SPINK5Q9NQ38 1064 aaPredicted RBP25.45■■□□□ 1.66
PCF11-203ENST00000530304 EFCAB6Q5THR3 1501 aa25.43■■□□□ 1.66
PCF11-203ENST00000530304 IFT172Q9UG01 1749 aa25.41■■□□□ 1.66
PCF11-203ENST00000530304 NKTRP30414 1462 aaKnown RBP25.41■■□□□ 1.66
PCF11-203ENST00000530304 MROH2AA6NES4 1674 aa25.39■■□□□ 1.65
PCF11-203ENST00000530304 NRXN1Q9ULB1 1477 aa25.38■■□□□ 1.65
PCF11-203ENST00000530304 E9PSI1 815 aa25.38■■□□□ 1.65
PCF11-203ENST00000530304 PPRC1Q5VV67 1664 aaKnown RBP25.38■■□□□ 1.65
PCF11-203ENST00000530304 LAS1LQ9Y4W2 734 aaKnown RBP25.37■■□□□ 1.65
PCF11-203ENST00000530304 KIDINS220Q9ULH0 1771 aa25.36■■□□□ 1.65
PCF11-203ENST00000530304 MYO3AQ8NEV4 1616 aa25.36■■□□□ 1.65
PCF11-203ENST00000530304 SBNO2Q9Y2G9 1366 aa25.36■■□□□ 1.65
PCF11-203ENST00000530304 DDRGK1Q96HY6 314 aa25.36■■□□□ 1.65
PCF11-203ENST00000530304 BCAR3O75815 825 aa25.35■■□□□ 1.65
PCF11-203ENST00000530304 NOS1P29475 1434 aa25.34■■□□□ 1.65
PCF11-203ENST00000530304 ASXL2Q76L83 1435 aa25.34■■□□□ 1.65
PCF11-203ENST00000530304 NGEFQ8N5V2 710 aa25.34■■□□□ 1.65
PCF11-203ENST00000530304 DMRT2Q9Y5R5 561 aa25.34■■□□□ 1.65
PCF11-203ENST00000530304 CENPJQ9HC77 1338 aaPredicted RBP25.34■■□□□ 1.65
PCF11-203ENST00000530304 LMTK2Q8IWU2 1503 aa25.33■■□□□ 1.65
PCF11-203ENST00000530304 POLR3AO14802 1390 aaPredicted RBP25.32■■□□□ 1.64
PCF11-203ENST00000530304 CHGAP10645 457 aaKnown RBP25.32■■□□□ 1.64
PCF11-203ENST00000530304 FAM161AQ3B820 660 aa25.31■■□□□ 1.64
PCF11-203ENST00000530304 ADGRB3O60242 1522 aa25.31■■□□□ 1.64
PCF11-203ENST00000530304 NEFMP07197 916 aa25.31■■□□□ 1.64
PCF11-203ENST00000530304 SETBP1Q9Y6X0 1596 aa25.3■■□□□ 1.64
PCF11-203ENST00000530304 C8orf34Q49A92 452 aa25.3■■□□□ 1.64
PCF11-203ENST00000530304 TRAK1Q9UPV9 953 aa25.3■■□□□ 1.64
PCF11-203ENST00000530304 USP35Q9P2H5 1018 aa25.29■■□□□ 1.64
PCF11-203ENST00000530304 ZNF518AQ6AHZ1 1483 aa25.29■■□□□ 1.64
PCF11-203ENST00000530304 PPM1GO15355 546 aaPredicted RBP25.28■■□□□ 1.64
PCF11-203ENST00000530304 WWC1Q8IX03 1113 aa25.28■■□□□ 1.64
PCF11-203ENST00000530304 NSD3Q9BZ95 1437 aa25.27■■□□□ 1.64
PCF11-203ENST00000530304 MORC1Q86VD1 984 aa25.26■■□□□ 1.63
PCF11-203ENST00000530304 SLC12A5Q9H2X9 1139 aa25.26■■□□□ 1.63
PCF11-203ENST00000530304 C14orf93Q9H972 538 aaKnown RBP25.26■■□□□ 1.63
PCF11-203ENST00000530304 RGS3P49796 1198 aa25.26■■□□□ 1.63
PCF11-203ENST00000530304 NPATQ14207 1427 aa25.25■■□□□ 1.63
PCF11-203ENST00000530304 TNNT2P45379 298 aaPredicted RBP25.24■■□□□ 1.63
PCF11-203ENST00000530304 CFAP65Q6ZU64 1925 aaKnown RBP25.23■■□□□ 1.63
PCF11-203ENST00000530304 PPLO60437 1756 aa25.23■■□□□ 1.63
PCF11-203ENST00000530304 PDE3AQ14432 1141 aa25.22■■□□□ 1.63
PCF11-203ENST00000530304 TMEM132EQ6IEE7 984 aa25.22■■□□□ 1.63
PCF11-203ENST00000530304 QRICH2Q9H0J4 1663 aa25.22■■□□□ 1.63
PCF11-203ENST00000530304 GGT6Q6P531 493 aa25.22■■□□□ 1.63
PCF11-203ENST00000530304 SHPRHQ149N8 1683 aa25.21■■□□□ 1.63
PCF11-203ENST00000530304 ZC3H13Q5T200 1668 aaKnown RBP25.21■■□□□ 1.63
PCF11-203ENST00000530304 ADGRB1O14514 1584 aa25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms