RNA–Protein interactions for RNA: ENST00000530041.5

USP47-209, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 3

Gene USP47, Length 767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-209ENST00000530041 MAP2K5Q13163 448 aa11.6□□□□□ -0.55
USP47-209ENST00000530041 NECTIN2Q92692 538 aa11.6□□□□□ -0.55
USP47-209ENST00000530041 MINK1Q8N4C8 1332 aaPredicted RBP11.57□□□□□ -0.56
USP47-209ENST00000530041 IRF6O14896 467 aa11.56□□□□□ -0.56
USP47-209ENST00000530041 ZC3H15Q8WU90 426 aaKnown RBP11.55□□□□□ -0.56
USP47-209ENST00000530041 ITGBL1O95965 494 aaPredicted RBP11.54□□□□□ -0.56
USP47-209ENST00000530041 BCANQ96GW7 911 aa11.54□□□□□ -0.56
USP47-209ENST00000530041 PHOX2BQ99453 314 aa11.54□□□□□ -0.56
USP47-209ENST00000530041 APLP1P51693 650 aa11.53□□□□□ -0.56
USP47-209ENST00000530041 IFFO2Q5TF58 517 aa11.53□□□□□ -0.56
USP47-209ENST00000530041 ZMYND10O75800 440 aa11.52□□□□□ -0.57
USP47-209ENST00000530041 DAXXQ9UER7 740 aaPredicted RBP11.52□□□□□ -0.57
USP47-209ENST00000530041 BARGINQ6ZT62 677 aa11.51□□□□□ -0.57
USP47-209ENST00000530041 CCDC102AQ96A19 550 aa11.5□□□□□ -0.57
USP47-209ENST00000530041 NLRP7Q8WX94 980 aa11.49□□□□□ -0.57
USP47-209ENST00000530041 PRR14Q9BWN1 585 aa11.49□□□□□ -0.57
USP47-209ENST00000530041 SLC10A3P09131 477 aa11.48□□□□□ -0.57
USP47-209ENST00000530041 KRI1Q8N9T8 703 aaKnown RBP11.48□□□□□ -0.57
USP47-209ENST00000530041 KCNC4Q03721 635 aa11.47□□□□□ -0.57
USP47-209ENST00000530041 RSPH4AQ5TD94 716 aa11.47□□□□□ -0.57
USP47-209ENST00000530041 TJAP1Q5JTD0 557 aa11.46□□□□□ -0.57
USP47-209ENST00000530041 CFHP08603 1231 aa11.45□□□□□ -0.58
USP47-209ENST00000530041 KMT5BQ4FZB7 885 aa11.45□□□□□ -0.58
USP47-209ENST00000530041 MTRQ99707 1265 aa11.45□□□□□ -0.58
USP47-209ENST00000530041 SULF1Q8IWU6 871 aa11.44□□□□□ -0.58
USP47-209ENST00000530041 DDX11L8A8MPP1 907 aa11.43□□□□□ -0.58
USP47-209ENST00000530041 IL21Q9HBE4 155 aa11.43□□□□□ -0.58
USP47-209ENST00000530041 ACTN4O43707 911 aaKnown RBP11.42□□□□□ -0.58
USP47-209ENST00000530041 MDM2Q00987 491 aaPredicted RBP11.41□□□□□ -0.58
USP47-209ENST00000530041 RDH13Q8NBN7 331 aa11.41□□□□□ -0.58
USP47-209ENST00000530041 PCDHB3Q9Y5E6 796 aa11.41□□□□□ -0.58
USP47-209ENST00000530041 A0A0G2JS52 829 aa11.39□□□□□ -0.59
USP47-209ENST00000530041 COPS2P61201 443 aa11.39□□□□□ -0.59
USP47-209ENST00000530041 GPCPD1Q9NPB8 672 aa11.38□□□□□ -0.59
USP47-209ENST00000530041 CLCN1P35523 988 aa11.37□□□□□ -0.59
USP47-209ENST00000530041 ZNF516Q92618 1163 aa11.37□□□□□ -0.59
USP47-209ENST00000530041 GCGRP47871 477 aa11.36□□□□□ -0.59
USP47-209ENST00000530041 BLOC1S3Q6QNY0 202 aa11.36□□□□□ -0.59
USP47-209ENST00000530041 TMUB1Q9BVT8 246 aa11.36□□□□□ -0.59
USP47-209ENST00000530041 ZPR1O75312 459 aa11.35□□□□□ -0.59
USP47-209ENST00000530041 CD46P15529 392 aa11.34□□□□□ -0.59
USP47-209ENST00000530041 AMHR2Q16671 573 aa11.34□□□□□ -0.59
USP47-209ENST00000530041 AK7Q96M32 723 aa11.34□□□□□ -0.59
USP47-209ENST00000530041 FAM217BQ9NTX9 383 aaPredicted RBP11.32□□□□□ -0.6
USP47-209ENST00000530041 TRIM66O15016 1216 aa11.31□□□□□ -0.6
USP47-209ENST00000530041 NR1I2O75469 434 aa11.31□□□□□ -0.6
USP47-209ENST00000530041 FUT2Q10981 343 aa11.31□□□□□ -0.6
USP47-209ENST00000530041 REPIN1Q9BWE0 567 aaKnown RBP11.31□□□□□ -0.6
USP47-209ENST00000530041 PUS10Q3MIT2 529 aaKnown RBP11.3□□□□□ -0.6
USP47-209ENST00000530041 NKX2-3Q8TAU0 364 aa11.3□□□□□ -0.6
USP47-209ENST00000530041 RGS20O76081 388 aa11.29□□□□□ -0.6
USP47-209ENST00000530041 ATP6V1AP38606 617 aa11.29□□□□□ -0.6
USP47-209ENST00000530041 TTLL12Q14166 644 aaPredicted RBP11.29□□□□□ -0.6
USP47-209ENST00000530041 SLC24A3Q9HC58 644 aa11.29□□□□□ -0.6
USP47-209ENST00000530041 MORN1Q5T089 497 aa11.28□□□□□ -0.6
USP47-209ENST00000530041 SCUBE3Q8IX30 993 aa11.27□□□□□ -0.61
USP47-209ENST00000530041 KDM4AO75164 1064 aa11.26□□□□□ -0.61
USP47-209ENST00000530041 SSTR3P32745 418 aaPredicted RBP11.26□□□□□ -0.61
USP47-209ENST00000530041 GRIPAP1Q4V328 841 aa11.26□□□□□ -0.61
USP47-209ENST00000530041 PPP1R18Q6NYC8 613 aa11.26□□□□□ -0.61
USP47-209ENST00000530041 TLL1O43897 1013 aa11.25□□□□□ -0.61
USP47-209ENST00000530041 GIGYF2Q6Y7W6 1299 aaKnown RBP11.25□□□□□ -0.61
USP47-209ENST00000530041 PARP9Q8IXQ6 854 aa11.24□□□□□ -0.61
USP47-209ENST00000530041 USP46P62068 366 aa11.23□□□□□ -0.61
USP47-209ENST00000530041 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.23□□□□□ -0.61
USP47-209ENST00000530041 SLC27A5Q9Y2P5 690 aa11.23□□□□□ -0.61
USP47-209ENST00000530041 ADH1BP00325 375 aa11.22□□□□□ -0.61
USP47-209ENST00000530041 GGCXP38435 758 aa11.22□□□□□ -0.61
USP47-209ENST00000530041 PDE4DQ08499 809 aa11.21□□□□□ -0.61
USP47-209ENST00000530041 THAP11Q96EK4 314 aa11.2□□□□□ -0.62
USP47-209ENST00000530041 SALL2Q9Y467 1007 aaPredicted RBP11.2□□□□□ -0.62
USP47-209ENST00000530041 HOXA2O43364 376 aa11.19□□□□□ -0.62
USP47-209ENST00000530041 NUTM1Q86Y26 1132 aa11.19□□□□□ -0.62
USP47-209ENST00000530041 SPSB2Q99619 263 aa11.19□□□□□ -0.62
USP47-209ENST00000530041 FMNL1O95466 1100 aaPredicted RBP11.18□□□□□ -0.62
USP47-209ENST00000530041 BRICD5Q6PL45 260 aa11.17□□□□□ -0.62
USP47-209ENST00000530041 S1PR4O95977 384 aa11.16□□□□□ -0.62
USP47-209ENST00000530041 MS4A1P11836 297 aa11.16□□□□□ -0.62
USP47-209ENST00000530041 Q3C1V9 767 aa11.16□□□□□ -0.62
USP47-209ENST00000530041 BEGAINQ9BUH8 593 aa11.16□□□□□ -0.62
USP47-209ENST00000530041 SLC6A16Q9GZN6 736 aa11.16□□□□□ -0.62
USP47-209ENST00000530041 RNF223E7ERA6 249 aa11.15□□□□□ -0.62
USP47-209ENST00000530041 SPIRE2Q8WWL2 714 aa11.15□□□□□ -0.62
USP47-209ENST00000530041 HLA-CQ95604 372 aa11.15□□□□□ -0.62
USP47-209ENST00000530041 RNF19BQ6ZMZ0 732 aa11.14□□□□□ -0.63
USP47-209ENST00000530041 FAM160A2Q8N612 972 aaPredicted RBP11.12□□□□□ -0.63
USP47-209ENST00000530041 ANKLE1Q8NAG6 615 aa11.12□□□□□ -0.63
USP47-209ENST00000530041 GUCA2AQ02747 115 aa11.11□□□□□ -0.63
USP47-209ENST00000530041 DIXDC1Q155Q3 683 aa11.11□□□□□ -0.63
USP47-209ENST00000530041 MSS51Q4VC12 460 aa11.11□□□□□ -0.63
USP47-209ENST00000530041 PRKD2Q9BZL6 878 aa11.11□□□□□ -0.63
USP47-209ENST00000530041 PPEF1O14829 653 aaPredicted RBP11.1□□□□□ -0.63
USP47-209ENST00000530041 V9GY48 417 aaPredicted RBP11.1□□□□□ -0.63
USP47-209ENST00000530041 MOXD2PA6NHM9 499 aa11.08□□□□□ -0.64
USP47-209ENST00000530041 FDX1P10109 184 aa11.08□□□□□ -0.64
USP47-209ENST00000530041 USB1Q9BQ65 265 aaKnown RBP11.08□□□□□ -0.64
USP47-209ENST00000530041 TBC1D2Q9BYX2 928 aa11.08□□□□□ -0.64
USP47-209ENST00000530041 NDUFV2P19404 249 aa11.07□□□□□ -0.64
USP47-209ENST00000530041 PRDM9Q9NQV7 894 aa11.07□□□□□ -0.64
USP47-209ENST00000530041 PCDHGC3Q9UN70 934 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms