RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 EYA1Q99502 592 aa6.7□□□□□ -1.34
CD44-229ENST00000528672 WBP1LQ9NX94 342 aa6.7□□□□□ -1.34
CD44-229ENST00000528672 ADGRG1Q9Y653 693 aa6.7□□□□□ -1.34
CD44-229ENST00000528672 LAPTM4AQ15012 233 aa6.69□□□□□ -1.34
CD44-229ENST00000528672 PNMA3Q9UL41 463 aa6.69□□□□□ -1.34
CD44-229ENST00000528672 PDE4DQ08499 809 aa6.68□□□□□ -1.34
CD44-229ENST00000528672 MAP2K5Q13163 448 aa6.68□□□□□ -1.34
CD44-229ENST00000528672 NUDT18Q6ZVK8 323 aa6.68□□□□□ -1.34
CD44-229ENST00000528672 MINK1Q8N4C8 1332 aaPredicted RBP6.68□□□□□ -1.34
CD44-229ENST00000528672 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.67□□□□□ -1.34
CD44-229ENST00000528672 IRF6O14896 467 aa6.67□□□□□ -1.34
CD44-229ENST00000528672 DNAJB2P25686 324 aa6.67□□□□□ -1.34
CD44-229ENST00000528672 SLC4A3P48751 1232 aa6.67□□□□□ -1.34
CD44-229ENST00000528672 HDGFP51858 240 aaKnown RBP6.67□□□□□ -1.34
CD44-229ENST00000528672 IL27Q8NEV9 243 aa6.67□□□□□ -1.34
CD44-229ENST00000528672 AK7Q96M32 723 aa6.67□□□□□ -1.34
CD44-229ENST00000528672 SEPT9Q9UHD8 586 aaPredicted RBP6.67□□□□□ -1.34
CD44-229ENST00000528672 METTL3Q86U44 580 aaKnown RBP6.66□□□□□ -1.34
CD44-229ENST00000528672 PXYLP1Q8TE99 480 aa6.66□□□□□ -1.34
CD44-229ENST00000528672 LRCH3Q96II8 777 aa6.66□□□□□ -1.34
CD44-229ENST00000528672 SMAPO00193 183 aa6.65□□□□□ -1.34
CD44-229ENST00000528672 LCE2BO14633 110 aa6.65□□□□□ -1.34
CD44-229ENST00000528672 TRAF7Q6Q0C0 670 aa6.65□□□□□ -1.34
CD44-229ENST00000528672 PARP9Q8IXQ6 854 aa6.65□□□□□ -1.34
CD44-229ENST00000528672 FAM117AQ9C073 453 aa6.65□□□□□ -1.34
CD44-229ENST00000528672 KDM4CQ9H3R0 1056 aa6.65□□□□□ -1.34
CD44-229ENST00000528672 TMEM134Q9H6X4 195 aa6.65□□□□□ -1.34
CD44-229ENST00000528672 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.65□□□□□ -1.34
CD44-229ENST00000528672 GFRA3O60609 400 aa6.64□□□□□ -1.35
CD44-229ENST00000528672 SLF2Q8IX21 1173 aa6.64□□□□□ -1.35
CD44-229ENST00000528672 TSR3Q9UJK0 312 aaKnown RBP6.64□□□□□ -1.35
CD44-229ENST00000528672 PLEKHG3A1L390 1219 aa6.62□□□□□ -1.35
CD44-229ENST00000528672 MS4A1P11836 297 aa6.62□□□□□ -1.35
CD44-229ENST00000528672 SAMD7Q7Z3H4 446 aa6.62□□□□□ -1.35
CD44-229ENST00000528672 PRR14Q9BWN1 585 aa6.62□□□□□ -1.35
CD44-229ENST00000528672 HPS5Q9UPZ3 1129 aa6.62□□□□□ -1.35
CD44-229ENST00000528672 RCCD1A6NED2 376 aa6.61□□□□□ -1.35
CD44-229ENST00000528672 MDM2Q00987 491 aaPredicted RBP6.6□□□□□ -1.35
CD44-229ENST00000528672 RSPH4AQ5TD94 716 aa6.6□□□□□ -1.35
CD44-229ENST00000528672 DAXXQ9UER7 740 aaPredicted RBP6.59□□□□□ -1.35
CD44-229ENST00000528672 NRG2O14511 850 aaPredicted RBP6.58□□□□□ -1.36
CD44-229ENST00000528672 PPP4CP60510 307 aa6.58□□□□□ -1.36
CD44-229ENST00000528672 TJAP1Q5JTD0 557 aa6.58□□□□□ -1.36
CD44-229ENST00000528672 SWT1Q5T5J6 900 aaKnown RBP6.58□□□□□ -1.36
CD44-229ENST00000528672 SULF1Q8IWU6 871 aa6.58□□□□□ -1.36
CD44-229ENST00000528672 PRKD2Q9BZL6 878 aa6.58□□□□□ -1.36
CD44-229ENST00000528672 GTF3C3Q9Y5Q9 886 aa6.58□□□□□ -1.36
CD44-229ENST00000528672 TTLL12Q14166 644 aaPredicted RBP6.57□□□□□ -1.36
CD44-229ENST00000528672 AMHR2Q16671 573 aa6.57□□□□□ -1.36
CD44-229ENST00000528672 FBXO31Q5XUX0 539 aaPredicted RBP6.57□□□□□ -1.36
CD44-229ENST00000528672 GIGYF2Q6Y7W6 1299 aaKnown RBP6.57□□□□□ -1.36
CD44-229ENST00000528672 TIMELESSQ9UNS1 1208 aa6.57□□□□□ -1.36
CD44-229ENST00000528672 CLCN1P35523 988 aa6.56□□□□□ -1.36
CD44-229ENST00000528672 TMUB1Q9BVT8 246 aa6.56□□□□□ -1.36
CD44-229ENST00000528672 TMEM132AQ24JP5 1023 aa6.55□□□□□ -1.36
CD44-229ENST00000528672 V9GY48 417 aaPredicted RBP6.55□□□□□ -1.36
CD44-229ENST00000528672 KMT5BQ4FZB7 885 aa6.54□□□□□ -1.36
CD44-229ENST00000528672 PPP1R18Q6NYC8 613 aa6.54□□□□□ -1.36
CD44-229ENST00000528672 ERICH6Q7L0X2 663 aa6.54□□□□□ -1.36
CD44-229ENST00000528672 GPCPD1Q9NPB8 672 aa6.54□□□□□ -1.36
CD44-229ENST00000528672 ACTN4O43707 911 aaKnown RBP6.52□□□□□ -1.37
CD44-229ENST00000528672 RNF40O75150 1001 aa6.52□□□□□ -1.37
CD44-229ENST00000528672 ZNF787Q6DD87 383 aa6.52□□□□□ -1.37
CD44-229ENST00000528672 MTRQ99707 1265 aa6.52□□□□□ -1.37
CD44-229ENST00000528672 IL21Q9HBE4 155 aa6.52□□□□□ -1.37
CD44-229ENST00000528672 SLC10A3P09131 477 aa6.51□□□□□ -1.37
CD44-229ENST00000528672 SSTR3P32745 418 aaPredicted RBP6.51□□□□□ -1.37
CD44-229ENST00000528672 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.51□□□□□ -1.37
CD44-229ENST00000528672 CFHP08603 1231 aa6.5□□□□□ -1.37
CD44-229ENST00000528672 APLP1P51693 650 aa6.5□□□□□ -1.37
CD44-229ENST00000528672 PROCA1Q8NCQ7 364 aaPredicted RBP6.5□□□□□ -1.37
CD44-229ENST00000528672 HLA-CQ95604 372 aa6.5□□□□□ -1.37
CD44-229ENST00000528672 CD46P15529 392 aa6.49□□□□□ -1.37
CD44-229ENST00000528672 ZNF516Q92618 1163 aa6.49□□□□□ -1.37
CD44-229ENST00000528672 FAM217BQ9NTX9 383 aaPredicted RBP6.49□□□□□ -1.37
CD44-229ENST00000528672 PDZRN3Q9UPQ7 1066 aa6.49□□□□□ -1.37
CD44-229ENST00000528672 GCGRP47871 477 aa6.48□□□□□ -1.37
CD44-229ENST00000528672 USP46P62068 366 aa6.48□□□□□ -1.37
CD44-229ENST00000528672 BEGAINQ9BUH8 593 aa6.48□□□□□ -1.37
CD44-229ENST00000528672 POLR3EQ9NVU0 708 aa6.48□□□□□ -1.37
CD44-229ENST00000528672 DDX11L8A8MPP1 907 aa6.47□□□□□ -1.37
CD44-229ENST00000528672 GRIPAP1Q4V328 841 aa6.47□□□□□ -1.37
CD44-229ENST00000528672 RDH13Q8NBN7 331 aa6.47□□□□□ -1.37
CD44-229ENST00000528672 PCDHB3Q9Y5E6 796 aa6.47□□□□□ -1.37
CD44-229ENST00000528672 NR1I2O75469 434 aa6.46□□□□□ -1.38
CD44-229ENST00000528672 DIXDC1Q155Q3 683 aa6.46□□□□□ -1.38
CD44-229ENST00000528672 ZNF775Q96BV0 537 aaPredicted RBP6.46□□□□□ -1.38
CD44-229ENST00000528672 SALL2Q9Y467 1007 aaPredicted RBP6.46□□□□□ -1.38
CD44-229ENST00000528672 NDUFV2P19404 249 aa6.45□□□□□ -1.38
CD44-229ENST00000528672 ATP6V1AP38606 617 aa6.45□□□□□ -1.38
CD44-229ENST00000528672 GUCA2AQ02747 115 aa6.45□□□□□ -1.38
CD44-229ENST00000528672 NKX2-3Q8TAU0 364 aa6.45□□□□□ -1.38
CD44-229ENST00000528672 LIMD1Q9UGP4 676 aa6.44□□□□□ -1.38
CD44-229ENST00000528672 KDM4AO75164 1064 aa6.43□□□□□ -1.38
CD44-229ENST00000528672 ZPR1O75312 459 aa6.43□□□□□ -1.38
CD44-229ENST00000528672 GJA5P36382 358 aa6.43□□□□□ -1.38
CD44-229ENST00000528672 GGCXP38435 758 aa6.43□□□□□ -1.38
CD44-229ENST00000528672 CSPP1Q1MSJ5 1256 aa6.42□□□□□ -1.38
CD44-229ENST00000528672 MORN1Q5T089 497 aa6.42□□□□□ -1.38
CD44-229ENST00000528672 SPIRE2Q8WWL2 714 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms