RNA–Protein interactions for RNA: ENST00000526829.1

VPS11-202, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS11, Length 1,952 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-202ENST00000526829 MED1Q15648 1581 aaPredicted RBP16.28■□□□□ 0.2
VPS11-202ENST00000526829 EFCAB6Q5THR3 1501 aa16.28■□□□□ 0.2
VPS11-202ENST00000526829 TMEM2Q9UHN6 1383 aa16.28■□□□□ 0.2
VPS11-202ENST00000526829 NOS1P29475 1434 aa16.27■□□□□ 0.2
VPS11-202ENST00000526829 XIRP1Q702N8 1843 aaKnown RBP16.26■□□□□ 0.19
VPS11-202ENST00000526829 ANP32EQ9BTT0 268 aa16.26■□□□□ 0.19
VPS11-202ENST00000526829 EID1Q9Y6B2 187 aa16.26■□□□□ 0.19
VPS11-202ENST00000526829 IDI1Q13907 227 aa16.25■□□□□ 0.19
VPS11-202ENST00000526829 ADGRB3O60242 1522 aa16.24■□□□□ 0.19
VPS11-202ENST00000526829 TET3O43151 1660 aa16.23■□□□□ 0.19
VPS11-202ENST00000526829 GTF3C3Q9Y5Q9 886 aa16.22■□□□□ 0.19
VPS11-202ENST00000526829 ANKRD50Q9ULJ7 1429 aa16.22■□□□□ 0.19
VPS11-202ENST00000526829 STAG3Q9UJ98 1225 aa16.22■□□□□ 0.19
VPS11-202ENST00000526829 RPRD2Q5VT52 1461 aaKnown RBP16.22■□□□□ 0.19
VPS11-202ENST00000526829 FAM50AQ14320 339 aaKnown RBP16.2■□□□□ 0.18
VPS11-202ENST00000526829 SLC52A1Q9NWF4 448 aa16.2■□□□□ 0.18
VPS11-202ENST00000526829 UNC13BO14795 1591 aa16.18■□□□□ 0.18
VPS11-202ENST00000526829 GCC2Q8IWJ2 1684 aa16.17■□□□□ 0.18
VPS11-202ENST00000526829 KCNA6P17658 529 aa16.17■□□□□ 0.18
VPS11-202ENST00000526829 NWD1Q149M9 1564 aa16.17■□□□□ 0.18
VPS11-202ENST00000526829 MYO5BQ9ULV0 1848 aa16.15■□□□□ 0.18
VPS11-202ENST00000526829 TMEM94Q12767 1356 aa16.15■□□□□ 0.18
VPS11-202ENST00000526829 ZFYVE9O95405 1425 aa16.15■□□□□ 0.18
VPS11-202ENST00000526829 FAM135BQ49AJ0 1406 aa16.14■□□□□ 0.17
VPS11-202ENST00000526829 NKTRP30414 1462 aaKnown RBP16.14■□□□□ 0.17
VPS11-202ENST00000526829 SLC26A8Q96RN1 970 aa16.14■□□□□ 0.17
VPS11-202ENST00000526829 ROCK1Q13464 1354 aa16.14■□□□□ 0.17
VPS11-202ENST00000526829 TMEM131LA2VDJ0 1609 aa16.14■□□□□ 0.17
VPS11-202ENST00000526829 E9PCH4 1651 aa16.12■□□□□ 0.17
VPS11-202ENST00000526829 PLEKHG1Q9ULL1 1385 aa16.11■□□□□ 0.17
VPS11-202ENST00000526829 KLHL34Q8N239 644 aa16.11■□□□□ 0.17
VPS11-202ENST00000526829 IQGAP3Q86VI3 1631 aa16.11■□□□□ 0.17
VPS11-202ENST00000526829 SENP3Q9H4L4 574 aaPredicted RBP16.11■□□□□ 0.17
VPS11-202ENST00000526829 RIMS2Q9UQ26 1411 aa16.1■□□□□ 0.17
VPS11-202ENST00000526829 CHD2O14647 1828 aaKnown RBP16.1■□□□□ 0.17
VPS11-202ENST00000526829 DIEXFQ68CQ4 756 aaKnown RBP16.1■□□□□ 0.17
VPS11-202ENST00000526829 PROSER2Q86WR7 435 aaPredicted RBP16.1■□□□□ 0.17
VPS11-202ENST00000526829 PHF23Q9BUL5 403 aaPredicted RBP16.1■□□□□ 0.17
VPS11-202ENST00000526829 ROBO1Q9Y6N7 1651 aa16.08■□□□□ 0.17
VPS11-202ENST00000526829 BCANQ96GW7 911 aa16.07■□□□□ 0.16
VPS11-202ENST00000526829 HDGFP51858 240 aaKnown RBP16.07■□□□□ 0.16
VPS11-202ENST00000526829 RBM33Q96EV2 1170 aaKnown RBP16.06■□□□□ 0.16
VPS11-202ENST00000526829 TBX22Q9Y458 520 aa16.05■□□□□ 0.16
VPS11-202ENST00000526829 MSH6P52701 1360 aa16.04■□□□□ 0.16
VPS11-202ENST00000526829 PPP1R15AO75807 674 aaPredicted RBP16.04■□□□□ 0.16
VPS11-202ENST00000526829 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.04■□□□□ 0.16
VPS11-202ENST00000526829 ADAMTS13Q76LX8 1427 aa16.04■□□□□ 0.16
VPS11-202ENST00000526829 DIP2AQ14689 1571 aa16.04■□□□□ 0.16
VPS11-202ENST00000526829 RGS17Q9UGC6 210 aaPredicted RBP16.04■□□□□ 0.16
VPS11-202ENST00000526829 TIMELESSQ9UNS1 1208 aa16.04■□□□□ 0.16
VPS11-202ENST00000526829 NCOA3Q9Y6Q9 1424 aa16.03■□□□□ 0.16
VPS11-202ENST00000526829 NUP155O75694 1391 aa16.03■□□□□ 0.16
VPS11-202ENST00000526829 CCER1Q8TC90 406 aaPredicted RBP16.02■□□□□ 0.16
VPS11-202ENST00000526829 PIK3R4Q99570 1358 aa16.01■□□□□ 0.15
VPS11-202ENST00000526829 PKNOX2Q96KN3 472 aa16.01■□□□□ 0.15
VPS11-202ENST00000526829 CHGAP10645 457 aaKnown RBP16■□□□□ 0.15
VPS11-202ENST00000526829 KCNA4P22459 653 aa16■□□□□ 0.15
VPS11-202ENST00000526829 SLAIN2Q9P270 581 aa16■□□□□ 0.15
VPS11-202ENST00000526829 ITGAEP38570 1179 aa15.99■□□□□ 0.15
VPS11-202ENST00000526829 PHLPP1O60346 1717 aa15.98■□□□□ 0.15
VPS11-202ENST00000526829 SPHKAPQ2M3C7 1700 aa15.98■□□□□ 0.15
VPS11-202ENST00000526829 ANO8Q9HCE9 1232 aaPredicted RBP15.98■□□□□ 0.15
VPS11-202ENST00000526829 TRPM2O94759 1503 aa15.97■□□□□ 0.15
VPS11-202ENST00000526829 NUTM2DQ5VT03 806 aaPredicted RBP15.96■□□□□ 0.15
VPS11-202ENST00000526829 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.96■□□□□ 0.15
VPS11-202ENST00000526829 COL16A1Q07092 1604 aaPredicted RBP15.96■□□□□ 0.14
VPS11-202ENST00000526829 NRXN3Q9Y4C0 1643 aa15.96■□□□□ 0.14
VPS11-202ENST00000526829 PTPRUQ92729 1446 aa15.95■□□□□ 0.14
VPS11-202ENST00000526829 SETBP1Q9Y6X0 1596 aa15.94■□□□□ 0.14
VPS11-202ENST00000526829 JCADQ9P266 1359 aa15.94■□□□□ 0.14
VPS11-202ENST00000526829 XRN1Q8IZH2 1706 aaKnown RBP15.93■□□□□ 0.14
VPS11-202ENST00000526829 C19orf44Q9H6X5 657 aa15.93■□□□□ 0.14
VPS11-202ENST00000526829 AHDC1Q5TGY3 1603 aaPredicted RBP15.93■□□□□ 0.14
VPS11-202ENST00000526829 RRBP1Q9P2E9 1410 aaKnown RBP15.92■□□□□ 0.14
VPS11-202ENST00000526829 POTEAQ6S8J7 498 aa15.92■□□□□ 0.14
VPS11-202ENST00000526829 CADPS2Q86UW7 1296 aa15.91■□□□□ 0.14
VPS11-202ENST00000526829 AMOTL2Q9Y2J4 779 aa15.91■□□□□ 0.14
VPS11-202ENST00000526829 CLTCL1P53675 1640 aa15.9■□□□□ 0.14
VPS11-202ENST00000526829 C14orf37Q86TY3 774 aa15.9■□□□□ 0.14
VPS11-202ENST00000526829 DCCP43146 1447 aa15.89■□□□□ 0.13
VPS11-202ENST00000526829 NAIPQ13075 1403 aa15.89■□□□□ 0.13
VPS11-202ENST00000526829 ATF3P18847 181 aa15.89■□□□□ 0.13
VPS11-202ENST00000526829 NEXMIFQ5QGS0 1516 aa15.88■□□□□ 0.13
VPS11-202ENST00000526829 SHPRHQ149N8 1683 aa15.88■□□□□ 0.13
VPS11-202ENST00000526829 LRP6O75581 1613 aa15.86■□□□□ 0.13
VPS11-202ENST00000526829 HOMEZQ8IX15 550 aa15.86■□□□□ 0.13
VPS11-202ENST00000526829 SPATA31A6Q5VVP1 1343 aa15.86■□□□□ 0.13
VPS11-202ENST00000526829 KIF1BO60333 1816 aa15.86■□□□□ 0.13
VPS11-202ENST00000526829 METP08581 1390 aa15.86■□□□□ 0.13
VPS11-202ENST00000526829 ZNF326Q5BKZ1 582 aaKnown RBP15.86■□□□□ 0.13
VPS11-202ENST00000526829 ZNF316A6NFI3 1004 aaPredicted RBP15.84■□□□□ 0.13
VPS11-202ENST00000526829 BRINP3Q76B58 766 aa15.84■□□□□ 0.13
VPS11-202ENST00000526829 MST1RQ04912 1400 aa15.83■□□□□ 0.13
VPS11-202ENST00000526829 ASXL1Q8IXJ9 1541 aa15.83■□□□□ 0.12
VPS11-202ENST00000526829 PDIA4P13667 645 aaKnown RBP15.83■□□□□ 0.12
VPS11-202ENST00000526829 NHSL1Q5SYE7 1610 aa15.82■□□□□ 0.12
VPS11-202ENST00000526829 NEFLP07196 543 aa15.82■□□□□ 0.12
VPS11-202ENST00000526829 HFM1A2PYH4 1435 aa15.82■□□□□ 0.12
VPS11-202ENST00000526829 ADGRL3Q9HAR2 1447 aa15.82■□□□□ 0.12
VPS11-202ENST00000526829 SETD1AO15047 1707 aaKnown RBP15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms