RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 BCAMP50895 628 aa11.08□□□□□ -0.64
CD44-223ENST00000526553 SLF2Q8IX21 1173 aa11.07□□□□□ -0.64
CD44-223ENST00000526553 SLC4A3P48751 1232 aa11.06□□□□□ -0.64
CD44-223ENST00000526553 AMHR2Q16671 573 aa11.06□□□□□ -0.64
CD44-223ENST00000526553 PLSCR2Q9NRY7 297 aa11.05□□□□□ -0.64
CD44-223ENST00000526553 DAXXQ9UER7 740 aaPredicted RBP11.05□□□□□ -0.64
CD44-223ENST00000526553 TRIM66O15016 1216 aa11.04□□□□□ -0.64
CD44-223ENST00000526553 NLRP7Q8WX94 980 aa11.04□□□□□ -0.64
CD44-223ENST00000526553 NECTIN2Q92692 538 aa11.04□□□□□ -0.64
CD44-223ENST00000526553 HCSTQ9UBK5 93 aa11.04□□□□□ -0.64
CD44-223ENST00000526553 TSR3Q9UJK0 312 aaKnown RBP11.04□□□□□ -0.64
CD44-223ENST00000526553 HPS5Q9UPZ3 1129 aa11.04□□□□□ -0.64
CD44-223ENST00000526553 CLCN1P35523 988 aa11.02□□□□□ -0.65
CD44-223ENST00000526553 MDM2Q00987 491 aaPredicted RBP11.02□□□□□ -0.65
CD44-223ENST00000526553 TMUB1Q9BVT8 246 aa11.02□□□□□ -0.65
CD44-223ENST00000526553 RNF40O75150 1001 aa11.01□□□□□ -0.65
CD44-223ENST00000526553 NYAP1Q6ZVC0 841 aa11.01□□□□□ -0.65
CD44-223ENST00000526553 GPCPD1Q9NPB8 672 aa11.01□□□□□ -0.65
CD44-223ENST00000526553 PTPN5P54829 565 aa11□□□□□ -0.65
CD44-223ENST00000526553 PPP4CP60510 307 aa11□□□□□ -0.65
CD44-223ENST00000526553 SULF1Q8IWU6 871 aa11□□□□□ -0.65
CD44-223ENST00000526553 WBP1LQ9NX94 342 aa10.99□□□□□ -0.65
CD44-223ENST00000526553 TTLL12Q14166 644 aaPredicted RBP10.98□□□□□ -0.65
CD44-223ENST00000526553 PDE4DQ08499 809 aa10.97□□□□□ -0.65
CD44-223ENST00000526553 RSPH4AQ5TD94 716 aa10.97□□□□□ -0.65
CD44-223ENST00000526553 DDX11L8A8MPP1 907 aa10.96□□□□□ -0.65
CD44-223ENST00000526553 SLC10A3P09131 477 aa10.96□□□□□ -0.65
CD44-223ENST00000526553 PARP9Q8IXQ6 854 aa10.96□□□□□ -0.65
CD44-223ENST00000526553 REPIN1Q9BWE0 567 aaKnown RBP10.96□□□□□ -0.65
CD44-223ENST00000526553 FAM217BQ9NTX9 383 aaPredicted RBP10.95□□□□□ -0.66
CD44-223ENST00000526553 GIGYF2Q6Y7W6 1299 aaKnown RBP10.94□□□□□ -0.66
CD44-223ENST00000526553 RDH13Q8NBN7 331 aa10.94□□□□□ -0.66
CD44-223ENST00000526553 PRR14Q9BWN1 585 aa10.94□□□□□ -0.66
CD44-223ENST00000526553 CFHP08603 1231 aa10.93□□□□□ -0.66
CD44-223ENST00000526553 PRKCSHP14314 528 aaPredicted RBP10.93□□□□□ -0.66
CD44-223ENST00000526553 CD46P15529 392 aa10.93□□□□□ -0.66
CD44-223ENST00000526553 KMT5BQ4FZB7 885 aa10.92□□□□□ -0.66
CD44-223ENST00000526553 APLP1P51693 650 aa10.91□□□□□ -0.66
CD44-223ENST00000526553 SSTR3P32745 418 aaPredicted RBP10.89□□□□□ -0.67
CD44-223ENST00000526553 ACTN4O43707 911 aaKnown RBP10.88□□□□□ -0.67
CD44-223ENST00000526553 GCGRP47871 477 aa10.88□□□□□ -0.67
CD44-223ENST00000526553 MS4A1P11836 297 aa10.85□□□□□ -0.67
CD44-223ENST00000526553 ITGBL1O95965 494 aaPredicted RBP10.83□□□□□ -0.68
CD44-223ENST00000526553 KDM4CQ9H3R0 1056 aa10.83□□□□□ -0.68
CD44-223ENST00000526553 GPBP1L1Q9HC44 474 aaPredicted RBP10.83□□□□□ -0.68
CD44-223ENST00000526553 PCDHB3Q9Y5E6 796 aa10.83□□□□□ -0.68
CD44-223ENST00000526553 BEGAINQ9BUH8 593 aa10.82□□□□□ -0.68
CD44-223ENST00000526553 KDM4AO75164 1064 aa10.81□□□□□ -0.68
CD44-223ENST00000526553 USP46P62068 366 aa10.81□□□□□ -0.68
CD44-223ENST00000526553 FUT2Q10981 343 aa10.81□□□□□ -0.68
CD44-223ENST00000526553 MTRQ99707 1265 aa10.81□□□□□ -0.68
CD44-223ENST00000526553 BRPF1P55201 1214 aaPredicted RBP10.8□□□□□ -0.68
CD44-223ENST00000526553 NEUROD2Q15784 382 aa10.8□□□□□ -0.68
CD44-223ENST00000526553 TJAP1Q5JTD0 557 aa10.8□□□□□ -0.68
CD44-223ENST00000526553 ATP6V1AP38606 617 aa10.79□□□□□ -0.68
CD44-223ENST00000526553 GRIPAP1Q4V328 841 aa10.79□□□□□ -0.68
CD44-223ENST00000526553 IL21Q9HBE4 155 aa10.79□□□□□ -0.68
CD44-223ENST00000526553 BLOC1S3Q6QNY0 202 aa10.78□□□□□ -0.68
CD44-223ENST00000526553 NUTM1Q86Y26 1132 aa10.78□□□□□ -0.68
CD44-223ENST00000526553 DIXDC1Q155Q3 683 aa10.77□□□□□ -0.69
CD44-223ENST00000526553 MORN1Q5T089 497 aa10.77□□□□□ -0.69
CD44-223ENST00000526553 IFFO2Q5TF58 517 aa10.77□□□□□ -0.69
CD44-223ENST00000526553 HOXA2O43364 376 aa10.76□□□□□ -0.69
CD44-223ENST00000526553 NR1I2O75469 434 aa10.76□□□□□ -0.69
CD44-223ENST00000526553 COPS2P61201 443 aa10.76□□□□□ -0.69
CD44-223ENST00000526553 KCNC4Q03721 635 aa10.76□□□□□ -0.69
CD44-223ENST00000526553 SPIRE2Q8WWL2 714 aa10.76□□□□□ -0.69
CD44-223ENST00000526553 DDRGK1Q96HY6 314 aa10.76□□□□□ -0.69
CD44-223ENST00000526553 PLA2G2EQ9NZK7 142 aa10.76□□□□□ -0.69
CD44-223ENST00000526553 PUS10Q3MIT2 529 aaKnown RBP10.75□□□□□ -0.69
CD44-223ENST00000526553 ZPR1O75312 459 aa10.73□□□□□ -0.69
CD44-223ENST00000526553 TBC1D2Q9BYX2 928 aa10.73□□□□□ -0.69
CD44-223ENST00000526553 FAM117AQ9C073 453 aa10.73□□□□□ -0.69
CD44-223ENST00000526553 SCUBE3Q8IX30 993 aa10.72□□□□□ -0.69
CD44-223ENST00000526553 ZNF516Q92618 1163 aa10.72□□□□□ -0.69
CD44-223ENST00000526553 SLC27A5Q9Y2P5 690 aa10.71□□□□□ -0.69
CD44-223ENST00000526553 GJA5P36382 358 aa10.7□□□□□ -0.7
CD44-223ENST00000526553 SALL2Q9Y467 1007 aaPredicted RBP10.7□□□□□ -0.7
CD44-223ENST00000526553 PLEKHG3A1L390 1219 aa10.69□□□□□ -0.7
CD44-223ENST00000526553 MOXD2PA6NHM9 499 aa10.69□□□□□ -0.7
CD44-223ENST00000526553 Q3C1V9 767 aa10.69□□□□□ -0.7
CD44-223ENST00000526553 HLA-CQ95604 372 aa10.69□□□□□ -0.7
CD44-223ENST00000526553 RSPH6AQ9H0K4 717 aa10.69□□□□□ -0.7
CD44-223ENST00000526553 MYSM1Q5VVJ2 828 aa10.68□□□□□ -0.7
CD44-223ENST00000526553 THAP11Q96EK4 314 aa10.68□□□□□ -0.7
CD44-223ENST00000526553 TLL1O43897 1013 aa10.67□□□□□ -0.7
CD44-223ENST00000526553 FDX1P10109 184 aa10.67□□□□□ -0.7
CD44-223ENST00000526553 GUCA2AQ02747 115 aa10.67□□□□□ -0.7
CD44-223ENST00000526553 RSBN1LQ6PCB5 846 aaPredicted RBP10.67□□□□□ -0.7
CD44-223ENST00000526553 SPTLC1O15269 473 aa10.66□□□□□ -0.7
CD44-223ENST00000526553 FMNL1O95466 1100 aaPredicted RBP10.66□□□□□ -0.7
CD44-223ENST00000526553 ADH1BP00325 375 aa10.66□□□□□ -0.7
CD44-223ENST00000526553 NDUFV2P19404 249 aa10.66□□□□□ -0.7
CD44-223ENST00000526553 SH3D19Q5HYK7 790 aa10.65□□□□□ -0.7
CD44-223ENST00000526553 BRICD5Q6PL45 260 aa10.65□□□□□ -0.7
CD44-223ENST00000526553 TUSC1Q2TAM9 212 aa10.64□□□□□ -0.71
CD44-223ENST00000526553 RNF19BQ6ZMZ0 732 aa10.64□□□□□ -0.71
CD44-223ENST00000526553 RIC3Q7Z5B4 369 aa10.64□□□□□ -0.71
CD44-223ENST00000526553 NKX2-3Q8TAU0 364 aa10.64□□□□□ -0.71
CD44-223ENST00000526553 SPSB2Q99619 263 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms