RNA–Protein interactions for RNA: ENST00000525367.1

USP47-206, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 434 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-206ENST00000525367 NUDT18Q6ZVK8 323 aa9.38□□□□□ -0.91
USP47-206ENST00000525367 STAC3Q96MF2 364 aa9.38□□□□□ -0.91
USP47-206ENST00000525367 ARXQ96QS3 562 aa9.38□□□□□ -0.91
USP47-206ENST00000525367 EYA1Q99502 592 aa9.38□□□□□ -0.91
USP47-206ENST00000525367 IRX2Q9BZI1 471 aaPredicted RBP9.38□□□□□ -0.91
USP47-206ENST00000525367 RCCD1A6NED2 376 aa9.37□□□□□ -0.91
USP47-206ENST00000525367 RBM46Q8TBY0 533 aaKnown RBP9.37□□□□□ -0.91
USP47-206ENST00000525367 A0A0G2JS52 829 aa9.36□□□□□ -0.91
USP47-206ENST00000525367 TRIM6-TRIM34B2RNG4 842 aa9.36□□□□□ -0.91
USP47-206ENST00000525367 SLC4A5Q9BY07 1137 aa9.36□□□□□ -0.91
USP47-206ENST00000525367 PNMA3Q9UL41 463 aa9.36□□□□□ -0.91
USP47-206ENST00000525367 PTPN5P54829 565 aa9.35□□□□□ -0.91
USP47-206ENST00000525367 SH3D19Q5HYK7 790 aa9.34□□□□□ -0.91
USP47-206ENST00000525367 TATDN2Q93075 761 aa9.34□□□□□ -0.91
USP47-206ENST00000525367 BHMG1C9JSJ3 638 aaPredicted RBP9.33□□□□□ -0.92
USP47-206ENST00000525367 THSD4Q6ZMP0 1018 aa9.33□□□□□ -0.92
USP47-206ENST00000525367 PROCA1Q8NCQ7 364 aaPredicted RBP9.33□□□□□ -0.92
USP47-206ENST00000525367 KCNH8Q96L42 1107 aa9.33□□□□□ -0.92
USP47-206ENST00000525367 GOPCQ9HD26 462 aa9.33□□□□□ -0.92
USP47-206ENST00000525367 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.32□□□□□ -0.92
USP47-206ENST00000525367 NBPF26B4DH59 902 aa9.32□□□□□ -0.92
USP47-206ENST00000525367 SUPT5HO00267 1087 aaKnown RBP9.32□□□□□ -0.92
USP47-206ENST00000525367 PCMTD1Q96MG8 357 aaPredicted RBP9.32□□□□□ -0.92
USP47-206ENST00000525367 POLR3EQ9NVU0 708 aa9.32□□□□□ -0.92
USP47-206ENST00000525367 MYSM1Q5VVJ2 828 aa9.31□□□□□ -0.92
USP47-206ENST00000525367 ZBED2Q9BTP6 218 aa9.31□□□□□ -0.92
USP47-206ENST00000525367 FBXO31Q5XUX0 539 aaPredicted RBP9.3□□□□□ -0.92
USP47-206ENST00000525367 KIAA1468Q9P260 1216 aa9.3□□□□□ -0.92
USP47-206ENST00000525367 DDX11L8A8MPP1 907 aa9.29□□□□□ -0.92
USP47-206ENST00000525367 DNAJB2P25686 324 aa9.29□□□□□ -0.92
USP47-206ENST00000525367 PACS2Q86VP3 889 aa9.29□□□□□ -0.92
USP47-206ENST00000525367 TBC1D2Q9BYX2 928 aa9.29□□□□□ -0.92
USP47-206ENST00000525367 TMEM134Q9H6X4 195 aa9.29□□□□□ -0.92
USP47-206ENST00000525367 ONECUT3O60422 494 aaPredicted RBP9.28□□□□□ -0.92
USP47-206ENST00000525367 CD46P15529 392 aa9.28□□□□□ -0.92
USP47-206ENST00000525367 SKIV2LQ15477 1246 aaKnown RBP9.28□□□□□ -0.92
USP47-206ENST00000525367 SEPT9Q9UHD8 586 aaPredicted RBP9.28□□□□□ -0.92
USP47-206ENST00000525367 LIMD1Q9UGP4 676 aa9.27□□□□□ -0.93
USP47-206ENST00000525367 SPIRE2Q8WWL2 714 aa9.26□□□□□ -0.93
USP47-206ENST00000525367 RSPH6AQ9H0K4 717 aa9.26□□□□□ -0.93
USP47-206ENST00000525367 ATP1B4Q9UN42 357 aaPredicted RBP9.26□□□□□ -0.93
USP47-206ENST00000525367 CLK2P49760 499 aaKnown RBP9.25□□□□□ -0.93
USP47-206ENST00000525367 WNT2BQ93097 391 aa9.24□□□□□ -0.93
USP47-206ENST00000525367 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.24□□□□□ -0.93
USP47-206ENST00000525367 ZMYND15Q9H091 742 aa9.23□□□□□ -0.93
USP47-206ENST00000525367 NDUFV2P19404 249 aa9.22□□□□□ -0.93
USP47-206ENST00000525367 SWT1Q5T5J6 900 aaKnown RBP9.22□□□□□ -0.93
USP47-206ENST00000525367 RDH13Q8NBN7 331 aa9.22□□□□□ -0.93
USP47-206ENST00000525367 MOXD2PA6NHM9 499 aa9.21□□□□□ -0.94
USP47-206ENST00000525367 SULF1Q8IWU6 871 aa9.21□□□□□ -0.94
USP47-206ENST00000525367 MRPL50Q8N5N7 158 aaKnown RBP9.21□□□□□ -0.94
USP47-206ENST00000525367 RABGEF1Q9UJ41 708 aa9.21□□□□□ -0.94
USP47-206ENST00000525367 ITGBL1O95965 494 aaPredicted RBP9.2□□□□□ -0.94
USP47-206ENST00000525367 SLC10A3P09131 477 aa9.2□□□□□ -0.94
USP47-206ENST00000525367 MCM6Q14566 821 aa9.2□□□□□ -0.94
USP47-206ENST00000525367 CSPP1Q1MSJ5 1256 aa9.2□□□□□ -0.94
USP47-206ENST00000525367 RIC3Q7Z5B4 369 aa9.2□□□□□ -0.94
USP47-206ENST00000525367 GOLGA8CPA6NN73 597 aa9.19□□□□□ -0.94
USP47-206ENST00000525367 HLA-CQ95604 372 aa9.19□□□□□ -0.94
USP47-206ENST00000525367 CLUAP1Q96AJ1 413 aa9.19□□□□□ -0.94
USP47-206ENST00000525367 RSBN1LQ6PCB5 846 aaPredicted RBP9.18□□□□□ -0.94
USP47-206ENST00000525367 NUTM1Q86Y26 1132 aa9.18□□□□□ -0.94
USP47-206ENST00000525367 HOMEZQ8IX15 550 aa9.18□□□□□ -0.94
USP47-206ENST00000525367 RFC5P40937 340 aa9.17□□□□□ -0.94
USP47-206ENST00000525367 FLIIQ13045 1269 aa9.17□□□□□ -0.94
USP47-206ENST00000525367 QPCTQ16769 361 aa9.17□□□□□ -0.94
USP47-206ENST00000525367 NBPF3Q9H094 633 aa9.17□□□□□ -0.94
USP47-206ENST00000525367 PCDHB15Q9Y5E8 787 aa9.17□□□□□ -0.94
USP47-206ENST00000525367 SPTLC1O15269 473 aa9.16□□□□□ -0.94
USP47-206ENST00000525367 GUCA2AQ02747 115 aa9.16□□□□□ -0.94
USP47-206ENST00000525367 GCGRP47871 477 aa9.15□□□□□ -0.94
USP47-206ENST00000525367 FAM98CQ17RN3 349 aaKnown RBP9.15□□□□□ -0.94
USP47-206ENST00000525367 SAMD7Q7Z3H4 446 aa9.15□□□□□ -0.94
USP47-206ENST00000525367 CABLES1Q8TDN4 633 aa9.15□□□□□ -0.94
USP47-206ENST00000525367 POM121Q96HA1 1249 aa9.15□□□□□ -0.94
USP47-206ENST00000525367 KDM4AO75164 1064 aa9.14□□□□□ -0.95
USP47-206ENST00000525367 DIXDC1Q155Q3 683 aa9.14□□□□□ -0.95
USP47-206ENST00000525367 C1orf115Q9H7X2 142 aa9.14□□□□□ -0.95
USP47-206ENST00000525367 SNRKQ9NRH2 765 aa9.14□□□□□ -0.95
USP47-206ENST00000525367 ARID3CA6NKF2 412 aa9.13□□□□□ -0.95
USP47-206ENST00000525367 HOXA2O43364 376 aa9.13□□□□□ -0.95
USP47-206ENST00000525367 RNF40O75150 1001 aa9.13□□□□□ -0.95
USP47-206ENST00000525367 Q6ZNB5 142 aa9.13□□□□□ -0.95
USP47-206ENST00000525367 UBTFP17480 764 aaKnown RBP9.12□□□□□ -0.95
USP47-206ENST00000525367 RTL5Q5HYW3 569 aaPredicted RBP9.12□□□□□ -0.95
USP47-206ENST00000525367 PCDHGC3Q9UN70 934 aa9.12□□□□□ -0.95
USP47-206ENST00000525367 PPP2R2DQ66LE6 453 aa9.11□□□□□ -0.95
USP47-206ENST00000525367 LILRB3O75022 631 aa9.1□□□□□ -0.95
USP47-206ENST00000525367 CFHP08603 1231 aa9.1□□□□□ -0.95
USP47-206ENST00000525367 TUSC1Q2TAM9 212 aa9.09□□□□□ -0.95
USP47-206ENST00000525367 ANKK1Q8NFD2 765 aa9.09□□□□□ -0.95
USP47-206ENST00000525367 ZFRQ96KR1 1074 aaKnown RBP9.09□□□□□ -0.95
USP47-206ENST00000525367 LCE2BO14633 110 aa9.08□□□□□ -0.96
USP47-206ENST00000525367 FDX1P10109 184 aa9.08□□□□□ -0.96
USP47-206ENST00000525367 FUT2Q10981 343 aa9.08□□□□□ -0.96
USP47-206ENST00000525367 HRCP23327 699 aa9.07□□□□□ -0.96
USP47-206ENST00000525367 NYAP1Q6ZVC0 841 aa9.07□□□□□ -0.96
USP47-206ENST00000525367 LAPTM4BQ86VI4 370 aa9.07□□□□□ -0.96
USP47-206ENST00000525367 SLF2Q8IX21 1173 aa9.07□□□□□ -0.96
USP47-206ENST00000525367 MTMR14Q8NCE2 650 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms