RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 BOLA1Q9Y3E2 137 aa8.49□□□□□ -1.05
USP47-204ENST00000525078 CLK2P49760 499 aaKnown RBP8.48□□□□□ -1.05
USP47-204ENST00000525078 TMEM259Q4ZIN3 620 aa8.48□□□□□ -1.05
USP47-204ENST00000525078 PLPP6Q8IY26 295 aa8.48□□□□□ -1.05
USP47-204ENST00000525078 RFX1P22670 979 aa8.46□□□□□ -1.06
USP47-204ENST00000525078 MYSM1Q5VVJ2 828 aa8.46□□□□□ -1.06
USP47-204ENST00000525078 POM121CA8CG34 1229 aa8.45□□□□□ -1.06
USP47-204ENST00000525078 UPF1Q92900 1129 aaKnown RBP eCLIP8.45□□□□□ -1.06
USP47-204ENST00000525078 IVNS1ABPQ9Y6Y0 642 aa8.45□□□□□ -1.06
USP47-204ENST00000525078 PTGER2P43116 358 aa8.44□□□□□ -1.06
USP47-204ENST00000525078 RSPH4AQ5TD94 716 aa8.44□□□□□ -1.06
USP47-204ENST00000525078 SND1Q7KZF4 910 aaKnown RBP eCLIP8.44□□□□□ -1.06
USP47-204ENST00000525078 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.43□□□□□ -1.06
USP47-204ENST00000525078 HOXB1P14653 301 aaPredicted RBP8.43□□□□□ -1.06
USP47-204ENST00000525078 G3V3G9 751 aa8.42□□□□□ -1.06
USP47-204ENST00000525078 MTMR14Q8NCE2 650 aa8.42□□□□□ -1.06
USP47-204ENST00000525078 FAM217BQ9NTX9 383 aaPredicted RBP8.42□□□□□ -1.06
USP47-204ENST00000525078 PRIM1P49642 420 aaKnown RBP8.41□□□□□ -1.06
USP47-204ENST00000525078 PHOX2BQ99453 314 aa8.41□□□□□ -1.06
USP47-204ENST00000525078 CARNS1A5YM72 827 aa8.39□□□□□ -1.07
USP47-204ENST00000525078 DIXDC1Q155Q3 683 aa8.39□□□□□ -1.07
USP47-204ENST00000525078 HDGFL1Q5TGJ6 251 aa8.39□□□□□ -1.07
USP47-204ENST00000525078 MICALL2Q8IY33 904 aa8.39□□□□□ -1.07
USP47-204ENST00000525078 ZNF710Q8N1W2 664 aa8.39□□□□□ -1.07
USP47-204ENST00000525078 TBC1D2Q9BYX2 928 aa8.39□□□□□ -1.07
USP47-204ENST00000525078 TBC1D2BQ9UPU7 963 aa8.39□□□□□ -1.07
USP47-204ENST00000525078 DOK7Q18PE1 504 aa8.38□□□□□ -1.07
USP47-204ENST00000525078 ERBB3P21860 1342 aa8.37□□□□□ -1.07
USP47-204ENST00000525078 C2orf72A6NCS6 295 aa8.37□□□□□ -1.07
USP47-204ENST00000525078 VRTNQ9H8Y1 702 aa8.37□□□□□ -1.07
USP47-204ENST00000525078 TTBK1Q5TCY1 1321 aaPredicted RBP8.36□□□□□ -1.07
USP47-204ENST00000525078 PPP2R2DQ66LE6 453 aa8.36□□□□□ -1.07
USP47-204ENST00000525078 TMEM92Q6UXU6 159 aa8.36□□□□□ -1.07
USP47-204ENST00000525078 CDHR5Q9HBB8 845 aa8.36□□□□□ -1.07
USP47-204ENST00000525078 FBXO31Q5XUX0 539 aaPredicted RBP8.35□□□□□ -1.07
USP47-204ENST00000525078 NLRP7Q8WX94 980 aa8.35□□□□□ -1.07
USP47-204ENST00000525078 LIMD1Q9UGP4 676 aa8.35□□□□□ -1.07
USP47-204ENST00000525078 UNCXA6NJT0 531 aa8.34□□□□□ -1.07
USP47-204ENST00000525078 EVI5O60447 810 aa8.34□□□□□ -1.07
USP47-204ENST00000525078 EIF5BO60841 1220 aaKnown RBP8.34□□□□□ -1.07
USP47-204ENST00000525078 CFAP70Q5T0N1 1121 aa8.34□□□□□ -1.07
USP47-204ENST00000525078 RIC3Q7Z5B4 369 aa8.34□□□□□ -1.07
USP47-204ENST00000525078 MAP3K7O43318 606 aa8.33□□□□□ -1.08
USP47-204ENST00000525078 AP1G2O75843 785 aa8.33□□□□□ -1.08
USP47-204ENST00000525078 OATP04181 439 aa8.33□□□□□ -1.08
USP47-204ENST00000525078 NPDC1Q9NQX5 325 aaPredicted RBP8.33□□□□□ -1.08
USP47-204ENST00000525078 SOCS7O14512 581 aa8.32□□□□□ -1.08
USP47-204ENST00000525078 CSPP1Q1MSJ5 1256 aa8.32□□□□□ -1.08
USP47-204ENST00000525078 FAM161AQ3B820 660 aa8.32□□□□□ -1.08
USP47-204ENST00000525078 METTL3Q86U44 580 aaKnown RBP8.32□□□□□ -1.08
USP47-204ENST00000525078 FAM177A1Q8N128 213 aaPredicted RBP8.32□□□□□ -1.08
USP47-204ENST00000525078 PPP1R12CQ9BZL4 782 aa8.32□□□□□ -1.08
USP47-204ENST00000525078 LMOD1P29536 600 aaPredicted RBP8.31□□□□□ -1.08
USP47-204ENST00000525078 VARS2Q5ST30 1063 aaKnown RBP8.31□□□□□ -1.08
USP47-204ENST00000525078 GPR153Q6NV75 609 aa8.31□□□□□ -1.08
USP47-204ENST00000525078 RBM47A0AV96 593 aaKnown RBP8.3□□□□□ -1.08
USP47-204ENST00000525078 RIMBP2O15034 1052 aa8.3□□□□□ -1.08
USP47-204ENST00000525078 SRPK2P78362 688 aaKnown RBP8.3□□□□□ -1.08
USP47-204ENST00000525078 WASHC4Q2M389 1173 aa8.3□□□□□ -1.08
USP47-204ENST00000525078 ADAMTS19Q8TE59 1207 aa8.3□□□□□ -1.08
USP47-204ENST00000525078 EN1Q05925 392 aaPredicted RBP8.29□□□□□ -1.08
USP47-204ENST00000525078 B4GALNT3Q6L9W6 998 aa8.29□□□□□ -1.08
USP47-204ENST00000525078 RBM33Q96EV2 1170 aaKnown RBP8.29□□□□□ -1.08
USP47-204ENST00000525078 ZSWIM6Q9HCJ5 1215 aa8.29□□□□□ -1.08
USP47-204ENST00000525078 NDUFB9Q9Y6M9 179 aa8.29□□□□□ -1.08
USP47-204ENST00000525078 KIF3CO14782 793 aa8.28□□□□□ -1.08
USP47-204ENST00000525078 CDCA8Q53HL2 280 aa8.28□□□□□ -1.08
USP47-204ENST00000525078 ZNF687Q8N1G0 1237 aa8.28□□□□□ -1.08
USP47-204ENST00000525078 PALM3A6NDB9 673 aaPredicted RBP8.27□□□□□ -1.09
USP47-204ENST00000525078 RNF166Q96A37 237 aaPredicted RBP8.27□□□□□ -1.09
USP47-204ENST00000525078 USP17L8P0C7I0 530 aa8.26□□□□□ -1.09
USP47-204ENST00000525078 SPIRE2Q8WWL2 714 aa8.26□□□□□ -1.09
USP47-204ENST00000525078 EPAS1Q99814 870 aa8.26□□□□□ -1.09
USP47-204ENST00000525078 GNEQ9Y223 722 aaKnown RBP8.26□□□□□ -1.09
USP47-204ENST00000525078 TMEM88BA6NKF7 163 aa8.25□□□□□ -1.09
USP47-204ENST00000525078 NUTM2BA6NNL0 878 aaPredicted RBP8.25□□□□□ -1.09
USP47-204ENST00000525078 NUTM2EB1AL46 878 aaPredicted RBP8.25□□□□□ -1.09
USP47-204ENST00000525078 ATG7O95352 703 aa8.25□□□□□ -1.09
USP47-204ENST00000525078 TUSC1Q2TAM9 212 aa8.25□□□□□ -1.09
USP47-204ENST00000525078 NUTM2DQ5VT03 806 aaPredicted RBP8.25□□□□□ -1.09
USP47-204ENST00000525078 NUTM1Q86Y26 1132 aa8.25□□□□□ -1.09
USP47-204ENST00000525078 NUTM2AQ8IVF1 878 aaPredicted RBP8.25□□□□□ -1.09
USP47-204ENST00000525078 CCER1Q8TC90 406 aaPredicted RBP8.25□□□□□ -1.09
USP47-204ENST00000525078 PXYLP1Q8TE99 480 aa8.25□□□□□ -1.09
USP47-204ENST00000525078 MRRFQ96E11 262 aaKnown RBP8.25□□□□□ -1.09
USP47-204ENST00000525078 IGSF5Q9NSI5 407 aa8.25□□□□□ -1.09
USP47-204ENST00000525078 SPTLC1O15269 473 aa8.24□□□□□ -1.09
USP47-204ENST00000525078 VAC14Q08AM6 782 aa8.24□□□□□ -1.09
USP47-204ENST00000525078 TFIP11Q9UBB9 837 aaKnown RBP8.24□□□□□ -1.09
USP47-204ENST00000525078 PHF14O94880 888 aa8.23□□□□□ -1.09
USP47-204ENST00000525078 QPCTQ16769 361 aa8.23□□□□□ -1.09
USP47-204ENST00000525078 TSR1Q2NL82 804 aaKnown RBP8.23□□□□□ -1.09
USP47-204ENST00000525078 ARSIQ5FYB1 569 aa8.23□□□□□ -1.09
USP47-204ENST00000525078 RSBN1LQ6PCB5 846 aaPredicted RBP8.23□□□□□ -1.09
USP47-204ENST00000525078 ADGRG1Q9Y653 693 aa8.22□□□□□ -1.09
USP47-204ENST00000525078 PPM1GO15355 546 aaPredicted RBP8.21□□□□□ -1.1
USP47-204ENST00000525078 LILRB3O75022 631 aa8.21□□□□□ -1.1
USP47-204ENST00000525078 ERCC3P19447 782 aa8.21□□□□□ -1.1
USP47-204ENST00000525078 PADI6Q6TGC4 694 aa8.21□□□□□ -1.1
USP47-204ENST00000525078 CHMP4AQ9BY43 222 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 120.8 ms