RNA–Protein interactions for RNA: ENST00000522987.1

MRPS28-209, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 3

Gene MRPS28, Length 487 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-209ENST00000522987 TMEM94Q12767 1356 aa23.78■■□□□ 1.4
MRPS28-209ENST00000522987 CHGAP10645 457 aaKnown RBP23.78■■□□□ 1.4
MRPS28-209ENST00000522987 PROSER2Q86WR7 435 aaPredicted RBP23.77■■□□□ 1.4
MRPS28-209ENST00000522987 TMEM131LA2VDJ0 1609 aa23.77■■□□□ 1.4
MRPS28-209ENST00000522987 RPRD2Q5VT52 1461 aaKnown RBP23.76■■□□□ 1.39
MRPS28-209ENST00000522987 SLC52A1Q9NWF4 448 aa23.76■■□□□ 1.39
MRPS28-209ENST00000522987 KCNA6P17658 529 aa23.75■■□□□ 1.39
MRPS28-209ENST00000522987 NUTM2DQ5VT03 806 aaPredicted RBP23.74■■□□□ 1.39
MRPS28-209ENST00000522987 CHD2O14647 1828 aaKnown RBP23.74■■□□□ 1.39
MRPS28-209ENST00000522987 RIMS2Q9UQ26 1411 aa23.74■■□□□ 1.39
MRPS28-209ENST00000522987 ROBO1Q9Y6N7 1651 aa23.73■■□□□ 1.39
MRPS28-209ENST00000522987 PPP1R15AO75807 674 aaPredicted RBP23.73■■□□□ 1.39
MRPS28-209ENST00000522987 NWD1Q149M9 1564 aa23.73■■□□□ 1.39
MRPS28-209ENST00000522987 IQGAP3Q86VI3 1631 aa23.73■■□□□ 1.39
MRPS28-209ENST00000522987 ZFYVE9O95405 1425 aa23.71■■□□□ 1.39
MRPS28-209ENST00000522987 NKTRP30414 1462 aaKnown RBP23.67■■□□□ 1.38
MRPS28-209ENST00000522987 ROCK1Q13464 1354 aa23.66■■□□□ 1.38
MRPS28-209ENST00000522987 PLEKHG1Q9ULL1 1385 aa23.66■■□□□ 1.38
MRPS28-209ENST00000522987 NUP155O75694 1391 aa23.65■■□□□ 1.38
MRPS28-209ENST00000522987 FAM135BQ49AJ0 1406 aa23.64■■□□□ 1.37
MRPS28-209ENST00000522987 MSH6P52701 1360 aa23.63■■□□□ 1.37
MRPS28-209ENST00000522987 PHLPP1O60346 1717 aa23.62■■□□□ 1.37
MRPS28-209ENST00000522987 SPHKAPQ2M3C7 1700 aa23.62■■□□□ 1.37
MRPS28-209ENST00000522987 HDGFP51858 240 aaKnown RBP23.59■■□□□ 1.37
MRPS28-209ENST00000522987 C14orf37Q86TY3 774 aa23.58■■□□□ 1.37
MRPS28-209ENST00000522987 RGS17Q9UGC6 210 aaPredicted RBP23.58■■□□□ 1.37
MRPS28-209ENST00000522987 ADAMTS13Q76LX8 1427 aa23.58■■□□□ 1.36
MRPS28-209ENST00000522987 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.56■■□□□ 1.36
MRPS28-209ENST00000522987 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.56■■□□□ 1.36
MRPS28-209ENST00000522987 SLAIN2Q9P270 581 aa23.55■■□□□ 1.36
MRPS28-209ENST00000522987 TBX22Q9Y458 520 aa23.55■■□□□ 1.36
MRPS28-209ENST00000522987 DIP2AQ14689 1571 aa23.52■■□□□ 1.36
MRPS28-209ENST00000522987 NRXN3Q9Y4C0 1643 aa23.51■■□□□ 1.35
MRPS28-209ENST00000522987 TRPM2O94759 1503 aa23.5■■□□□ 1.35
MRPS28-209ENST00000522987 ZNF326Q5BKZ1 582 aaKnown RBP23.5■■□□□ 1.35
MRPS28-209ENST00000522987 CLTCL1P53675 1640 aa23.49■■□□□ 1.35
MRPS28-209ENST00000522987 PTPRUQ92729 1446 aa23.49■■□□□ 1.35
MRPS28-209ENST00000522987 COL16A1Q07092 1604 aaPredicted RBP23.48■■□□□ 1.35
MRPS28-209ENST00000522987 KIF1BO60333 1816 aa23.47■■□□□ 1.35
MRPS28-209ENST00000522987 AMOTL2Q9Y2J4 779 aa23.47■■□□□ 1.35
MRPS28-209ENST00000522987 POTEAQ6S8J7 498 aa23.46■■□□□ 1.35
MRPS28-209ENST00000522987 SETD1AO15047 1707 aaKnown RBP23.44■■□□□ 1.34
MRPS28-209ENST00000522987 XRN1Q8IZH2 1706 aaKnown RBP23.44■■□□□ 1.34
MRPS28-209ENST00000522987 ATF3P18847 181 aa23.43■■□□□ 1.34
MRPS28-209ENST00000522987 RRBP1Q9P2E9 1410 aaKnown RBP23.42■■□□□ 1.34
MRPS28-209ENST00000522987 PIK3R4Q99570 1358 aa23.41■■□□□ 1.34
MRPS28-209ENST00000522987 SETBP1Q9Y6X0 1596 aa23.41■■□□□ 1.34
MRPS28-209ENST00000522987 NAIPQ13075 1403 aa23.41■■□□□ 1.34
MRPS28-209ENST00000522987 JCADQ9P266 1359 aa23.4■■□□□ 1.34
MRPS28-209ENST00000522987 C19orf44Q9H6X5 657 aa23.4■■□□□ 1.34
MRPS28-209ENST00000522987 NCOA3Q9Y6Q9 1424 aa23.4■■□□□ 1.34
MRPS28-209ENST00000522987 NEXMIFQ5QGS0 1516 aa23.39■■□□□ 1.34
MRPS28-209ENST00000522987 CADPS2Q86UW7 1296 aa23.39■■□□□ 1.33
MRPS28-209ENST00000522987 TRIM52Q96A61 297 aa23.39■■□□□ 1.33
MRPS28-209ENST00000522987 METP08581 1390 aa23.38■■□□□ 1.33
MRPS28-209ENST00000522987 LRP6O75581 1613 aa23.37■■□□□ 1.33
MRPS28-209ENST00000522987 AHDC1Q5TGY3 1603 aaPredicted RBP23.37■■□□□ 1.33
MRPS28-209ENST00000522987 NALCNQ8IZF0 1738 aa23.36■■□□□ 1.33
MRPS28-209ENST00000522987 SHPRHQ149N8 1683 aa23.35■■□□□ 1.33
MRPS28-209ENST00000522987 MEX3CQ5U5Q3 659 aaKnown RBP23.33■■□□□ 1.33
MRPS28-209ENST00000522987 BRINP3Q76B58 766 aa23.33■■□□□ 1.33
MRPS28-209ENST00000522987 ASXL1Q8IXJ9 1541 aa23.3■■□□□ 1.32
MRPS28-209ENST00000522987 NUTM2BA6NNL0 878 aaPredicted RBP23.3■■□□□ 1.32
MRPS28-209ENST00000522987 NUTM2EB1AL46 878 aaPredicted RBP23.3■■□□□ 1.32
MRPS28-209ENST00000522987 NUTM2AQ8IVF1 878 aaPredicted RBP23.3■■□□□ 1.32
MRPS28-209ENST00000522987 DDX17Q92841 729 aaKnown RBP23.29■■□□□ 1.32
MRPS28-209ENST00000522987 NHSL1Q5SYE7 1610 aa23.29■■□□□ 1.32
MRPS28-209ENST00000522987 MST1RQ04912 1400 aa23.28■■□□□ 1.32
MRPS28-209ENST00000522987 PPLO60437 1756 aa23.28■■□□□ 1.32
MRPS28-209ENST00000522987 FOXD1Q16676 465 aa23.27■■□□□ 1.32
MRPS28-209ENST00000522987 SLC4A1APQ9BWU0 796 aaKnown RBP23.27■■□□□ 1.32
MRPS28-209ENST00000522987 HFM1A2PYH4 1435 aa23.26■■□□□ 1.31
MRPS28-209ENST00000522987 DCCP43146 1447 aa23.26■■□□□ 1.31
MRPS28-209ENST00000522987 SPATA31A6Q5VVP1 1343 aa23.26■■□□□ 1.31
MRPS28-209ENST00000522987 ADGRL3Q9HAR2 1447 aa23.25■■□□□ 1.31
MRPS28-209ENST00000522987 ROBO2Q9HCK4 1378 aa23.18■■□□□ 1.3
MRPS28-209ENST00000522987 VGFO15240 615 aaPredicted RBP23.18■■□□□ 1.3
MRPS28-209ENST00000522987 SETD5Q9C0A6 1442 aa23.16■■□□□ 1.3
MRPS28-209ENST00000522987 ZNF772Q68DY9 489 aaPredicted RBP23.15■■□□□ 1.3
MRPS28-209ENST00000522987 C1orf167Q5SNV9 1468 aa23.15■■□□□ 1.3
MRPS28-209ENST00000522987 RGL3Q3MIN7 710 aa23.14■■□□□ 1.29
MRPS28-209ENST00000522987 AFF2P51816 1311 aa23.13■■□□□ 1.29
MRPS28-209ENST00000522987 ORAI2Q96SN7 254 aa23.13■■□□□ 1.29
MRPS28-209ENST00000522987 PTCH1Q13635 1447 aa23.13■■□□□ 1.29
MRPS28-209ENST00000522987 IFT172Q9UG01 1749 aa23.13■■□□□ 1.29
MRPS28-209ENST00000522987 LRRC59Q96AG4 307 aaKnown RBP23.12■■□□□ 1.29
MRPS28-209ENST00000522987 PNPLA6Q8IY17 1366 aa23.12■■□□□ 1.29
MRPS28-209ENST00000522987 RPGRIP1LQ68CZ1 1315 aa23.11■■□□□ 1.29
MRPS28-209ENST00000522987 C8orf37Q96NL8 207 aa23.11■■□□□ 1.29
MRPS28-209ENST00000522987 ADGRF5Q8IZF2 1346 aa23.09■■□□□ 1.29
MRPS28-209ENST00000522987 STK26Q9P289 416 aa23.09■■□□□ 1.29
MRPS28-209ENST00000522987 CCDC144AA2RUR9 1427 aa23.08■■□□□ 1.29
MRPS28-209ENST00000522987 ADAMTS2O95450 1211 aa23.08■■□□□ 1.29
MRPS28-209ENST00000522987 RXRBP28702 533 aa23.08■■□□□ 1.29
MRPS28-209ENST00000522987 MPHOSPH9Q99550 1183 aa23.06■■□□□ 1.28
MRPS28-209ENST00000522987 LAMC1P11047 1609 aa23.05■■□□□ 1.28
MRPS28-209ENST00000522987 NUTM2FA1L443 756 aa23.05■■□□□ 1.28
MRPS28-209ENST00000522987 TMEM132EQ6IEE7 984 aa23.03■■□□□ 1.28
MRPS28-209ENST00000522987 SPATA31E1Q6ZUB1 1445 aa23.02■■□□□ 1.28
MRPS28-209ENST00000522987 WAPLQ7Z5K2 1190 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms