RNA–Protein interactions for RNA: ENST00000519489.1

CTNNA1-216, Transcript of catenin alpha 1, humanhuman

TSL 2

Gene CTNNA1, Length 358 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-216ENST00000519489 HRCP23327 699 aa11.78□□□□□ -0.52
CTNNA1-216ENST00000519489 ZNF777Q9ULD5 760 aaPredicted RBP11.78□□□□□ -0.52
CTNNA1-216ENST00000519489 SHPRHQ149N8 1683 aa11.78□□□□□ -0.52
CTNNA1-216ENST00000519489 PRDM15P57071 1507 aaPredicted RBP11.77□□□□□ -0.52
CTNNA1-216ENST00000519489 C8orf37Q96NL8 207 aa11.77□□□□□ -0.53
CTNNA1-216ENST00000519489 SSUH2Q9Y2M2 353 aa11.77□□□□□ -0.53
CTNNA1-216ENST00000519489 BCL9LQ86UU0 1499 aa11.76□□□□□ -0.53
CTNNA1-216ENST00000519489 CDK11AQ9UQ88 783 aaPredicted RBP11.76□□□□□ -0.53
CTNNA1-216ENST00000519489 TIAM1Q13009 1591 aa11.75□□□□□ -0.53
CTNNA1-216ENST00000519489 SENP3-EIF4A1A0A087X0R7 540 aa11.75□□□□□ -0.53
CTNNA1-216ENST00000519489 AHDC1Q5TGY3 1603 aaPredicted RBP11.75□□□□□ -0.53
CTNNA1-216ENST00000519489 KIF3BO15066 747 aa11.74□□□□□ -0.53
CTNNA1-216ENST00000519489 CCDC125Q86Z20 511 aa11.74□□□□□ -0.53
CTNNA1-216ENST00000519489 SLC26A8Q96RN1 970 aa11.74□□□□□ -0.53
CTNNA1-216ENST00000519489 WASHC2CQ9Y4E1 1318 aa11.74□□□□□ -0.53
CTNNA1-216ENST00000519489 MSH6P52701 1360 aa11.74□□□□□ -0.53
CTNNA1-216ENST00000519489 NHSL1Q5SYE7 1610 aa11.74□□□□□ -0.53
CTNNA1-216ENST00000519489 SLIT1O75093 1534 aa11.73□□□□□ -0.53
CTNNA1-216ENST00000519489 DHX29Q7Z478 1369 aaKnown RBP11.73□□□□□ -0.53
CTNNA1-216ENST00000519489 PIP4P2Q8N4L2 257 aa11.73□□□□□ -0.53
CTNNA1-216ENST00000519489 ZNF692Q9BU19 519 aaPredicted RBP11.73□□□□□ -0.53
CTNNA1-216ENST00000519489 CLIP1P30622 1438 aa11.72□□□□□ -0.53
CTNNA1-216ENST00000519489 CEP350Q5VT06 3117 aa11.72□□□□□ -0.53
CTNNA1-216ENST00000519489 NWD1Q149M9 1564 aa11.71□□□□□ -0.53
CTNNA1-216ENST00000519489 MAST1Q9Y2H9 1570 aa11.71□□□□□ -0.53
CTNNA1-216ENST00000519489 FXR2P51116 673 aaKnown RBP eCLIP11.71□□□□□ -0.532e-7■■■■□ 19.8
CTNNA1-216ENST00000519489 NGLY1Q96IV0 654 aa11.71□□□□□ -0.53
CTNNA1-216ENST00000519489 ERVK-7P63135 1459 aa11.7□□□□□ -0.54
CTNNA1-216ENST00000519489 KIAA1107Q9UPP5 1409 aa11.69□□□□□ -0.54
CTNNA1-216ENST00000519489 UBR1Q8IWV7 1749 aa11.69□□□□□ -0.54
CTNNA1-216ENST00000519489 BRINP3Q76B58 766 aa11.69□□□□□ -0.54
CTNNA1-216ENST00000519489 GPATCH8Q9UKJ3 1502 aaKnown RBP11.69□□□□□ -0.54
CTNNA1-216ENST00000519489 TET3O43151 1660 aa11.68□□□□□ -0.54
CTNNA1-216ENST00000519489 CDC42BPAQ5VT25 1732 aa11.68□□□□□ -0.54
CTNNA1-216ENST00000519489 BLMP54132 1417 aaPredicted RBP11.68□□□□□ -0.54
CTNNA1-216ENST00000519489 ZNF644Q9H582 1327 aaPredicted RBP11.67□□□□□ -0.54
CTNNA1-216ENST00000519489 SPDYE1Q8NFV5 336 aaPredicted RBP11.67□□□□□ -0.54
CTNNA1-216ENST00000519489 NKTRP30414 1462 aaKnown RBP11.67□□□□□ -0.54
CTNNA1-216ENST00000519489 LRRIQ1Q96JM4 1722 aa11.66□□□□□ -0.54
CTNNA1-216ENST00000519489 ADAMTS2O95450 1211 aa11.66□□□□□ -0.54
CTNNA1-216ENST00000519489 ATRNO75882 1429 aa11.66□□□□□ -0.54
CTNNA1-216ENST00000519489 SETD5Q9C0A6 1442 aa11.66□□□□□ -0.54
CTNNA1-216ENST00000519489 ABCC3O15438 1527 aa11.65□□□□□ -0.54
CTNNA1-216ENST00000519489 KDM5AP29375 1690 aaKnown RBP11.65□□□□□ -0.54
CTNNA1-216ENST00000519489 ZNF784Q8NCA9 323 aaPredicted RBP11.65□□□□□ -0.54
CTNNA1-216ENST00000519489 DDX17Q92841 729 aaKnown RBP11.65□□□□□ -0.54
CTNNA1-216ENST00000519489 USP21Q9UK80 565 aa11.65□□□□□ -0.54
CTNNA1-216ENST00000519489 PNPLA6Q8IY17 1366 aa11.65□□□□□ -0.55
CTNNA1-216ENST00000519489 TMEM2Q9UHN6 1383 aa11.65□□□□□ -0.55
CTNNA1-216ENST00000519489 ADGBQ8N7X0 1667 aa11.65□□□□□ -0.55
CTNNA1-216ENST00000519489 MBD5Q9P267 1494 aa11.63□□□□□ -0.55
CTNNA1-216ENST00000519489 C1QTNF8P60827 252 aa11.63□□□□□ -0.55
CTNNA1-216ENST00000519489 TRPC5Q9UL62 973 aaPredicted RBP11.63□□□□□ -0.55
CTNNA1-216ENST00000519489 EID1Q9Y6B2 187 aa11.63□□□□□ -0.55
CTNNA1-216ENST00000519489 UTRNP46939 3433 aa11.63□□□□□ -0.55
CTNNA1-216ENST00000519489 FNBP4Q8N3X1 1017 aaPredicted RBP11.62□□□□□ -0.55
CTNNA1-216ENST00000519489 FMN1Q68DA7 1419 aa11.6□□□□□ -0.55
CTNNA1-216ENST00000519489 R3HDM1Q15032 1099 aaKnown RBP11.6□□□□□ -0.55
CTNNA1-216ENST00000519489 RTEL1-TNFRSF6BF6WH68 1400 aa11.6□□□□□ -0.55
CTNNA1-216ENST00000519489 ARHGAP35Q9NRY4 1499 aa11.59□□□□□ -0.55
CTNNA1-216ENST00000519489 CLEC11AQ9Y240 323 aa11.59□□□□□ -0.55
CTNNA1-216ENST00000519489 CFDP1Q9UEE9 299 aaPredicted RBP11.58□□□□□ -0.56
CTNNA1-216ENST00000519489 CAMSAP2Q08AD1 1489 aa11.57□□□□□ -0.56
CTNNA1-216ENST00000519489 LRRC59Q96AG4 307 aaKnown RBP11.57□□□□□ -0.56
CTNNA1-216ENST00000519489 PLEKHH2Q8IVE3 1493 aa11.57□□□□□ -0.56
CTNNA1-216ENST00000519489 ASXL1Q8IXJ9 1541 aa11.56□□□□□ -0.56
CTNNA1-216ENST00000519489 CADPS2Q86UW7 1296 aa11.56□□□□□ -0.56
CTNNA1-216ENST00000519489 C19orf44Q9H6X5 657 aa11.56□□□□□ -0.56
CTNNA1-216ENST00000519489 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.55□□□□□ -0.56
CTNNA1-216ENST00000519489 NCOA3Q9Y6Q9 1424 aa11.54□□□□□ -0.56
CTNNA1-216ENST00000519489 GJD4Q96KN9 370 aaPredicted RBP11.54□□□□□ -0.56
CTNNA1-216ENST00000519489 ATF3P18847 181 aa11.53□□□□□ -0.56
CTNNA1-216ENST00000519489 PIK3C2BO00750 1634 aa11.53□□□□□ -0.56
CTNNA1-216ENST00000519489 MROH1Q8NDA8 1641 aa11.53□□□□□ -0.56
CTNNA1-216ENST00000519489 C14orf37Q86TY3 774 aa11.52□□□□□ -0.57
CTNNA1-216ENST00000519489 EN1Q05925 392 aaPredicted RBP11.51□□□□□ -0.57
CTNNA1-216ENST00000519489 IDI1Q13907 227 aa11.51□□□□□ -0.57
CTNNA1-216ENST00000519489 MST1RQ04912 1400 aa11.51□□□□□ -0.57
CTNNA1-216ENST00000519489 SP7Q8TDD2 431 aaPredicted RBP11.5□□□□□ -0.57
CTNNA1-216ENST00000519489 GLI3P10071 1580 aa11.5□□□□□ -0.57
CTNNA1-216ENST00000519489 PRKAR2AP13861 404 aaKnown RBP11.49□□□□□ -0.57
CTNNA1-216ENST00000519489 SF3B2Q13435 895 aaKnown RBP11.49□□□□□ -0.57
CTNNA1-216ENST00000519489 RALGAPBQ86X10 1494 aa11.48□□□□□ -0.57
CTNNA1-216ENST00000519489 EFCAB6Q5THR3 1501 aa11.48□□□□□ -0.57
CTNNA1-216ENST00000519489 UNC13BO14795 1591 aa11.48□□□□□ -0.57
CTNNA1-216ENST00000519489 CHD2O14647 1828 aaKnown RBP11.48□□□□□ -0.57
CTNNA1-216ENST00000519489 CAMTA1Q9Y6Y1 1673 aa11.47□□□□□ -0.57
CTNNA1-216ENST00000519489 PTCH1Q13635 1447 aa11.47□□□□□ -0.57
CTNNA1-216ENST00000519489 CCNB3Q8WWL7 1395 aa11.47□□□□□ -0.57
CTNNA1-216ENST00000519489 SEPT12Q8IYM1 358 aa11.47□□□□□ -0.57
CTNNA1-216ENST00000519489 HAX1O00165 279 aa11.46□□□□□ -0.57
CTNNA1-216ENST00000519489 SLC34A2O95436 690 aa11.46□□□□□ -0.57
CTNNA1-216ENST00000519489 BCANQ96GW7 911 aa11.46□□□□□ -0.57
CTNNA1-216ENST00000519489 CFAP65Q6ZU64 1925 aaKnown RBP11.46□□□□□ -0.58
CTNNA1-216ENST00000519489 BAG6P46379 1132 aa11.45□□□□□ -0.58
CTNNA1-216ENST00000519489 ARHGAP31Q2M1Z3 1444 aa11.44□□□□□ -0.58
CTNNA1-216ENST00000519489 CASKIN1Q8WXD9 1431 aa11.44□□□□□ -0.58
CTNNA1-216ENST00000519489 PTPRUQ92729 1446 aa11.44□□□□□ -0.58
CTNNA1-216ENST00000519489 STAG3Q9UJ98 1225 aa11.44□□□□□ -0.58
CTNNA1-216ENST00000519489 TBX22Q9Y458 520 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms