RNA–Protein interactions for RNA: ENST00000518604.1

SQLE-202, Transcript of squalene epoxidase, humanhuman

TSL 2

Gene SQLE, Length 743 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-202ENST00000518604 LAPTM4BQ86VI4 370 aa9.48□□□□□ -0.89
SQLE-202ENST00000518604 SULF1Q8IWU6 871 aa9.48□□□□□ -0.89
SQLE-202ENST00000518604 NBPF3Q9H094 633 aa9.48□□□□□ -0.89
SQLE-202ENST00000518604 GOPCQ9HD26 462 aa9.48□□□□□ -0.89
SQLE-202ENST00000518604 GTF3C3Q9Y5Q9 886 aa9.48□□□□□ -0.89
SQLE-202ENST00000518604 NLRP7Q8WX94 980 aa9.47□□□□□ -0.89
SQLE-202ENST00000518604 SMAPO00193 183 aa9.46□□□□□ -0.9
SQLE-202ENST00000518604 HDGFP51858 240 aaKnown RBP9.46□□□□□ -0.9
SQLE-202ENST00000518604 LSM11P83369 360 aaKnown RBP eCLIP9.46□□□□□ -0.9
SQLE-202ENST00000518604 FAM98CQ17RN3 349 aaKnown RBP9.46□□□□□ -0.9
SQLE-202ENST00000518604 RSPH6AQ9H0K4 717 aa9.46□□□□□ -0.9
SQLE-202ENST00000518604 BHMG1C9JSJ3 638 aaPredicted RBP9.45□□□□□ -0.9
SQLE-202ENST00000518604 DIXDC1Q155Q3 683 aa9.45□□□□□ -0.9
SQLE-202ENST00000518604 BEGAINQ9BUH8 593 aa9.45□□□□□ -0.9
SQLE-202ENST00000518604 RSPH4AQ5TD94 716 aa9.44□□□□□ -0.9
SQLE-202ENST00000518604 SLC4A3P48751 1232 aa9.42□□□□□ -0.9
SQLE-202ENST00000518604 ADGRD1Q6QNK2 874 aa9.42□□□□□ -0.9
SQLE-202ENST00000518604 ERICH6Q7L0X2 663 aa9.42□□□□□ -0.9
SQLE-202ENST00000518604 CD46P15529 392 aa9.41□□□□□ -0.9
SQLE-202ENST00000518604 SH3D19Q5HYK7 790 aa9.41□□□□□ -0.9
SQLE-202ENST00000518604 SEPT9Q9UHD8 586 aaPredicted RBP9.41□□□□□ -0.9
SQLE-202ENST00000518604 DDX11L8A8MPP1 907 aa9.4□□□□□ -0.9
SQLE-202ENST00000518604 MRPL50Q8N5N7 158 aaKnown RBP9.4□□□□□ -0.9
SQLE-202ENST00000518604 HRO43593 1189 aa9.39□□□□□ -0.91
SQLE-202ENST00000518604 SWT1Q5T5J6 900 aaKnown RBP9.39□□□□□ -0.91
SQLE-202ENST00000518604 SKIV2LQ15477 1246 aaKnown RBP9.38□□□□□ -0.91
SQLE-202ENST00000518604 SLF2Q8IX21 1173 aa9.38□□□□□ -0.91
SQLE-202ENST00000518604 STAC3Q96MF2 364 aa9.38□□□□□ -0.91
SQLE-202ENST00000518604 PCMTD1Q96MG8 357 aaPredicted RBP9.38□□□□□ -0.91
SQLE-202ENST00000518604 ANKRD13DQ6ZTN6 518 aa9.37□□□□□ -0.91
SQLE-202ENST00000518604 NECTIN2Q92692 538 aa9.37□□□□□ -0.91
SQLE-202ENST00000518604 ZFRQ96KR1 1074 aaKnown RBP9.37□□□□□ -0.91
SQLE-202ENST00000518604 RDH13Q8NBN7 331 aa9.36□□□□□ -0.91
SQLE-202ENST00000518604 RNF166Q96A37 237 aaPredicted RBP9.36□□□□□ -0.91
SQLE-202ENST00000518604 TBC1D2Q9BYX2 928 aa9.36□□□□□ -0.91
SQLE-202ENST00000518604 SAMD7Q7Z3H4 446 aa9.35□□□□□ -0.91
SQLE-202ENST00000518604 NUTM1Q86Y26 1132 aa9.35□□□□□ -0.91
SQLE-202ENST00000518604 GCGRP47871 477 aa9.34□□□□□ -0.91
SQLE-202ENST00000518604 USP46P62068 366 aa9.34□□□□□ -0.91
SQLE-202ENST00000518604 MYSM1Q5VVJ2 828 aa9.34□□□□□ -0.91
SQLE-202ENST00000518604 SPIRE2Q8WWL2 714 aa9.34□□□□□ -0.91
SQLE-202ENST00000518604 GOLGA8CPA6NN73 597 aa9.33□□□□□ -0.92
SQLE-202ENST00000518604 GJA5P36382 358 aa9.33□□□□□ -0.92
SQLE-202ENST00000518604 SLC10A3P09131 477 aa9.32□□□□□ -0.92
SQLE-202ENST00000518604 TUSC1Q2TAM9 212 aa9.32□□□□□ -0.92
SQLE-202ENST00000518604 LRCH3Q96II8 777 aa9.32□□□□□ -0.92
SQLE-202ENST00000518604 KDM4AO75164 1064 aa9.31□□□□□ -0.92
SQLE-202ENST00000518604 ANKK1Q8NFD2 765 aa9.31□□□□□ -0.92
SQLE-202ENST00000518604 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.31□□□□□ -0.92
SQLE-202ENST00000518604 SPTLC1O15269 473 aa9.3□□□□□ -0.92
SQLE-202ENST00000518604 CLK2P49760 499 aaKnown RBP9.3□□□□□ -0.92
SQLE-202ENST00000518604 POLR3EQ9NVU0 708 aa9.3□□□□□ -0.92
SQLE-202ENST00000518604 RIC3Q7Z5B4 369 aa9.29□□□□□ -0.92
SQLE-202ENST00000518604 MYT1LQ9UL68 1186 aa9.29□□□□□ -0.92
SQLE-202ENST00000518604 KMT5BQ4FZB7 885 aa9.28□□□□□ -0.92
SQLE-202ENST00000518604 GRIPAP1Q4V328 841 aa9.28□□□□□ -0.92
SQLE-202ENST00000518604 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.28□□□□□ -0.92
SQLE-202ENST00000518604 PRR14Q9BWN1 585 aa9.28□□□□□ -0.92
SQLE-202ENST00000518604 SOWAHBA6NEL2 793 aa9.27□□□□□ -0.93
SQLE-202ENST00000518604 RSBN1LQ6PCB5 846 aaPredicted RBP9.27□□□□□ -0.93
SQLE-202ENST00000518604 RNF40O75150 1001 aa9.26□□□□□ -0.93
SQLE-202ENST00000518604 CFHP08603 1231 aa9.26□□□□□ -0.93
SQLE-202ENST00000518604 PROCA1Q8NCQ7 364 aaPredicted RBP9.26□□□□□ -0.93
SQLE-202ENST00000518604 WNT2BQ93097 391 aa9.26□□□□□ -0.93
SQLE-202ENST00000518604 ATP1B4Q9UN42 357 aaPredicted RBP9.26□□□□□ -0.93
SQLE-202ENST00000518604 MOXD2PA6NHM9 499 aa9.25□□□□□ -0.93
SQLE-202ENST00000518604 HOXA2O43364 376 aa9.25□□□□□ -0.93
SQLE-202ENST00000518604 PPP4CP60510 307 aa9.24□□□□□ -0.93
SQLE-202ENST00000518604 LIMD1Q9UGP4 676 aa9.24□□□□□ -0.93
SQLE-202ENST00000518604 TSR3Q9UJK0 312 aaKnown RBP9.24□□□□□ -0.93
SQLE-202ENST00000518604 ACTN4O43707 911 aaKnown RBP9.23□□□□□ -0.93
SQLE-202ENST00000518604 ATP6V1AP38606 617 aa9.23□□□□□ -0.93
SQLE-202ENST00000518604 FLIIQ13045 1269 aa9.23□□□□□ -0.93
SQLE-202ENST00000518604 PRPF38BQ5VTL8 546 aaKnown RBP9.23□□□□□ -0.93
SQLE-202ENST00000518604 PPP2R2DQ66LE6 453 aa9.23□□□□□ -0.93
SQLE-202ENST00000518604 FDX1P10109 184 aa9.22□□□□□ -0.93
SQLE-202ENST00000518604 NDUFV2P19404 249 aa9.22□□□□□ -0.93
SQLE-202ENST00000518604 HPS5Q9UPZ3 1129 aa9.22□□□□□ -0.93
SQLE-202ENST00000518604 FUT2Q10981 343 aa9.21□□□□□ -0.94
SQLE-202ENST00000518604 C14orf37Q86TY3 774 aa9.21□□□□□ -0.94
SQLE-202ENST00000518604 LILRB3O75022 631 aa9.2□□□□□ -0.94
SQLE-202ENST00000518604 BCAMP50895 628 aa9.2□□□□□ -0.94
SQLE-202ENST00000518604 TMEM259Q4ZIN3 620 aa9.2□□□□□ -0.94
SQLE-202ENST00000518604 NYAP1Q6ZVC0 841 aa9.19□□□□□ -0.94
SQLE-202ENST00000518604 BANK1Q8NDB2 785 aa9.19□□□□□ -0.94
SQLE-202ENST00000518604 ZBTB3Q9H5J0 574 aa9.19□□□□□ -0.94
SQLE-202ENST00000518604 TIMELESSQ9UNS1 1208 aa9.19□□□□□ -0.94
SQLE-202ENST00000518604 SPDYE5A6NIY4 337 aa9.18□□□□□ -0.94
SQLE-202ENST00000518604 RFC5P40937 340 aa9.18□□□□□ -0.94
SQLE-202ENST00000518604 THSD4Q6ZMP0 1018 aa9.18□□□□□ -0.94
SQLE-202ENST00000518604 PCDHB15Q9Y5E8 787 aa9.18□□□□□ -0.94
SQLE-202ENST00000518604 MORN1Q5T089 497 aa9.17□□□□□ -0.94
SQLE-202ENST00000518604 NUTM2BA6NNL0 878 aaPredicted RBP9.16□□□□□ -0.94
SQLE-202ENST00000518604 NUTM2EB1AL46 878 aaPredicted RBP9.16□□□□□ -0.94
SQLE-202ENST00000518604 CSPP1Q1MSJ5 1256 aa9.16□□□□□ -0.94
SQLE-202ENST00000518604 Q3C1V9 767 aa9.16□□□□□ -0.94
SQLE-202ENST00000518604 NUTM2DQ5VT03 806 aaPredicted RBP9.16□□□□□ -0.94
SQLE-202ENST00000518604 NUTM2AQ8IVF1 878 aaPredicted RBP9.16□□□□□ -0.94
SQLE-202ENST00000518604 PCDHGC3Q9UN70 934 aa9.16□□□□□ -0.94
SQLE-202ENST00000518604 HRCP23327 699 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms