RNA–Protein interactions for RNA: ENST00000515710.1

TRIO-223, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 3

Gene TRIO, Length 1,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-223	ENST00000515710	IDI1	Q13907	227 aa		28.04	■■■□□ 2.08
TRIO-223	ENST00000515710	ESF1	Q9H501	851 aa	Known RBP	28.04	■■■□□ 2.08
TRIO-223	ENST00000515710	KIAA1210	Q9ULL0	1709 aa		28.04	■■■□□ 2.08
TRIO-223	ENST00000515710	NRXN1	Q9ULB1	1477 aa		28.03	■■■□□ 2.08
TRIO-223	ENST00000515710	ADGRF5	Q8IZF2	1346 aa		28	■■■□□ 2.07
TRIO-223	ENST00000515710	FBXO31	Q5XUX0	539 aa	Predicted RBP	28	■■■□□ 2.07
TRIO-223	ENST00000515710	ANP32C	O43423	234 aa		27.98	■■■□□ 2.07
TRIO-223	ENST00000515710	PPL	O60437	1756 aa		27.97	■■■□□ 2.07
TRIO-223	ENST00000515710	SPATA31D1	Q6ZQQ2	1576 aa		27.97	■■■□□ 2.07
TRIO-223	ENST00000515710	ZMYM3	Q14202	1370 aa		27.95	■■■□□ 2.07
TRIO-223	ENST00000515710	SCAF11	Q99590	1463 aa	Known RBP	27.93	■■■□□ 2.06
TRIO-223	ENST00000515710	VGF	O15240	615 aa	Predicted RBP	27.93	■■■□□ 2.06
TRIO-223	ENST00000515710	CFAP70	Q5T0N1	1121 aa		27.92	■■■□□ 2.06
TRIO-223	ENST00000515710	TMEM131L	A2VDJ0	1609 aa		27.92	■■■□□ 2.06
TRIO-223	ENST00000515710	NEXMIF	Q5QGS0	1516 aa		27.91	■■■□□ 2.06
TRIO-223	ENST00000515710	IQGAP1	P46940	1657 aa		27.91	■■■□□ 2.06
TRIO-223	ENST00000515710	PIK3C2G	O75747	1445 aa		27.9	■■■□□ 2.06
TRIO-223	ENST00000515710	ZFYVE9	O95405	1425 aa		27.89	■■■□□ 2.06
TRIO-223	ENST00000515710	C14orf93	Q9H972	538 aa	Known RBP	27.88	■■■□□ 2.05
TRIO-223	ENST00000515710	TESK2	Q96S53	571 aa		27.87	■■■□□ 2.05
TRIO-223	ENST00000515710	EIF3A	Q14152	1382 aa	Known RBP	27.86	■■■□□ 2.05
TRIO-223	ENST00000515710	SETBP1	Q9Y6X0	1596 aa		27.86	■■■□□ 2.05
TRIO-223	ENST00000515710	CCER2	I3L3R5	266 aa		27.84	■■■□□ 2.05
TRIO-223	ENST00000515710	STAG3	Q9UJ98	1225 aa		27.84	■■■□□ 2.05
TRIO-223	ENST00000515710	POLR3GL	Q9BT43	218 aa		27.84	■■■□□ 2.05
TRIO-223	ENST00000515710	TMF1	P82094	1093 aa		27.83	■■■□□ 2.05
TRIO-223	ENST00000515710	SLC24A1	O60721	1099 aa		27.81	■■■□□ 2.04
TRIO-223	ENST00000515710	MYO5B	Q9ULV0	1848 aa		27.8	■■■□□ 2.04
TRIO-223	ENST00000515710	A2ML1	A8K2U0	1454 aa		27.78	■■■□□ 2.04
TRIO-223	ENST00000515710	TNR	Q92752	1358 aa		27.78	■■■□□ 2.04
TRIO-223	ENST00000515710	NUTM2D	Q5VT03	806 aa	Predicted RBP	27.76	■■■□□ 2.03
TRIO-223	ENST00000515710	DISP3	Q9P2K9	1392 aa		27.75	■■■□□ 2.03
TRIO-223	ENST00000515710	ADGRB1	O14514	1584 aa		27.75	■■■□□ 2.03
TRIO-223	ENST00000515710	CDCA8	Q53HL2	280 aa		27.73	■■■□□ 2.03
TRIO-223	ENST00000515710	CENPB	P07199	599 aa	Predicted RBP	27.73	■■■□□ 2.03
TRIO-223	ENST00000515710	YTHDC1	Q96MU7	727 aa	Known RBP	27.71	■■■□□ 2.03
TRIO-223	ENST00000515710	MYO3A	Q8NEV4	1616 aa		27.69	■■■□□ 2.02
TRIO-223	ENST00000515710	RIMS2	Q9UQ26	1411 aa		27.69	■■■□□ 2.02
TRIO-223	ENST00000515710	PRKRIP1	Q9H875	184 aa	Predicted RBP	27.69	■■■□□ 2.02
TRIO-223	ENST00000515710	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	27.69	■■■□□ 2.02
TRIO-223	ENST00000515710	KDM5A	P29375	1690 aa	Known RBP	27.68	■■■□□ 2.02
TRIO-223	ENST00000515710	FER1L4	A9Z1Z3	1794 aa		27.68	■■■□□ 2.02
TRIO-223	ENST00000515710	HDGF	P51858	240 aa	Known RBP	27.67	■■■□□ 2.02
TRIO-223	ENST00000515710	TMEM132E	Q6IEE7	984 aa		27.67	■■■□□ 2.02
TRIO-223	ENST00000515710	SBNO2	Q9Y2G9	1366 aa		27.67	■■■□□ 2.02
TRIO-223	ENST00000515710	NLRP1	Q9C000	1473 aa		27.66	■■■□□ 2.02
TRIO-223	ENST00000515710	TRAK1	Q9UPV9	953 aa		27.65	■■■□□ 2.02
TRIO-223	ENST00000515710	CENPJ	Q9HC77	1338 aa	Predicted RBP	27.65	■■■□□ 2.02
TRIO-223	ENST00000515710	C3	P01024	1663 aa		27.64	■■■□□ 2.02
TRIO-223	ENST00000515710	CEBPA	P49715	358 aa	Predicted RBP	27.63	■■■□□ 2.01
TRIO-223	ENST00000515710	ALK	Q9UM73	1620 aa		27.6	■■■□□ 2.01
TRIO-223	ENST00000515710	UBR1	Q8IWV7	1749 aa		27.58	■■■□□ 2.01
TRIO-223	ENST00000515710	ASXL1	Q8IXJ9	1541 aa		27.57	■■■□□ 2
TRIO-223	ENST00000515710	TMEM2	Q9UHN6	1383 aa		27.56	■■■□□ 2
TRIO-223	ENST00000515710	KTN1	Q86UP2	1357 aa	Known RBP	27.55	■■■□□ 2
TRIO-223	ENST00000515710	PER1	O15534	1290 aa	Predicted RBP	27.55	■■■□□ 2
TRIO-223	ENST00000515710	MYT1	Q01538	1121 aa		27.54	■■■□□ 2
TRIO-223	ENST00000515710	PANK3	Q9H999	370 aa		27.53	■■■□□ 2
TRIO-223	ENST00000515710	ARHGEF28	Q8N1W1	1705 aa	Known RBP	27.53	■■■□□ 2
TRIO-223	ENST00000515710	QRICH2	Q9H0J4	1663 aa		27.53	■■■□□ 2
TRIO-223	ENST00000515710	YTHDC2	Q9H6S0	1430 aa	Known RBP	27.53	■■■□□ 2
TRIO-223	ENST00000515710	SCAF1	Q9H7N4	1312 aa	Known RBP	27.53	■■■□□ 2
TRIO-223	ENST00000515710	RALBP1	Q15311	655 aa		27.49	■■□□□ 1.99
TRIO-223	ENST00000515710	PUS7	Q96PZ0	661 aa	Known RBP	27.49	■■□□□ 1.99
TRIO-223	ENST00000515710	STK26	Q9P289	416 aa		27.49	■■□□□ 1.99
TRIO-223	ENST00000515710	SENP3	Q9H4L4	574 aa	Predicted RBP	27.48	■■□□□ 1.99
TRIO-223	ENST00000515710	ADAMTSL3	P82987	1691 aa		27.47	■■□□□ 1.99
TRIO-223	ENST00000515710	PTPRM	P28827	1452 aa		27.47	■■□□□ 1.99
TRIO-223	ENST00000515710	PLPPR3	Q6T4P5	718 aa		27.46	■■□□□ 1.99
TRIO-223	ENST00000515710	RIMS1	Q86UR5	1692 aa	Known RBP	27.46	■■□□□ 1.99
TRIO-223	ENST00000515710	SETD1A	O15047	1707 aa	Known RBP	27.45	■■□□□ 1.99
TRIO-223	ENST00000515710	LRPPRC	P42704	1394 aa	Known RBP	27.45	■■□□□ 1.99
TRIO-223	ENST00000515710	NRXN3	Q9Y4C0	1643 aa		27.45	■■□□□ 1.98
TRIO-223	ENST00000515710	THEMIS	Q8N1K5	641 aa	Predicted RBP	27.45	■■□□□ 1.98
TRIO-223	ENST00000515710	EVC2	Q86UK5	1308 aa		27.44	■■□□□ 1.98
TRIO-223	ENST00000515710	SLIT1	O75093	1534 aa		27.43	■■□□□ 1.98
TRIO-223	ENST00000515710	DLC1	Q96QB1	1528 aa		27.43	■■□□□ 1.98
TRIO-223	ENST00000515710	MYOM1	P52179	1685 aa		27.43	■■□□□ 1.98
TRIO-223	ENST00000515710	MRS2	Q9HD23	443 aa		27.43	■■□□□ 1.98
TRIO-223	ENST00000515710	EID1	Q9Y6B2	187 aa		27.43	■■□□□ 1.98
TRIO-223	ENST00000515710	ARHGAP23	Q9P227	1491 aa		27.42	■■□□□ 1.98
TRIO-223	ENST00000515710	PLEKHG1	Q9ULL1	1385 aa		27.42	■■□□□ 1.98
TRIO-223	ENST00000515710	ABCC11	Q96J66	1382 aa		27.42	■■□□□ 1.98
TRIO-223	ENST00000515710	CCDC184	Q52MB2	194 aa		27.41	■■□□□ 1.98
TRIO-223	ENST00000515710	TXNDC2	Q86VQ3	553 aa		27.41	■■□□□ 1.98
TRIO-223	ENST00000515710	POGK	Q9P215	609 aa		27.41	■■□□□ 1.98
TRIO-223	ENST00000515710	CNGB1	Q14028	1251 aa	Predicted RBP	27.4	■■□□□ 1.98
TRIO-223	ENST00000515710	PRAM1	Q96QH2	718 aa		27.4	■■□□□ 1.98
TRIO-223	ENST00000515710	KNSTRN	Q9Y448	316 aa		27.4	■■□□□ 1.98
TRIO-223	ENST00000515710	MYBBP1A	Q9BQG0	1328 aa	Known RBP	27.39	■■□□□ 1.98
TRIO-223	ENST00000515710	PARD3	Q8TEW0	1356 aa		27.39	■■□□□ 1.98
TRIO-223	ENST00000515710	LTK	P29376	864 aa		27.39	■■□□□ 1.97
TRIO-223	ENST00000515710	BCAN	Q96GW7	911 aa		27.39	■■□□□ 1.97
TRIO-223	ENST00000515710	SIRT1	Q96EB6	747 aa		27.37	■■□□□ 1.97
TRIO-223	ENST00000515710	MET	P08581	1390 aa		27.36	■■□□□ 1.97
TRIO-223	ENST00000515710	TULP4	Q9NRJ4	1543 aa		27.36	■■□□□ 1.97
TRIO-223	ENST00000515710	ADAMTS13	Q76LX8	1427 aa		27.34	■■□□□ 1.97
TRIO-223	ENST00000515710	SAFB2	Q14151	953 aa	Known RBP eCLIP	27.34	■■□□□ 1.97
TRIO-223	ENST00000515710	NPC1L1	Q9UHC9	1359 aa		27.34	■■□□□ 1.97
TRIO-223	ENST00000515710	BRD4	O60885	1362 aa	Predicted RBP	27.33	■■□□□ 1.97

Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms