RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 IQGAP3Q86VI3 1631 aa20.61■□□□□ 0.89
TCOF1-215ENST00000515516 SENP3Q9H4L4 574 aaPredicted RBP20.61■□□□□ 0.89
TCOF1-215ENST00000515516 PROSER2Q86WR7 435 aaPredicted RBP20.59■□□□□ 0.89
TCOF1-215ENST00000515516 PLEKHG1Q9ULL1 1385 aa20.59■□□□□ 0.89
TCOF1-215ENST00000515516 TRIM52Q96A61 297 aa20.58■□□□□ 0.89
TCOF1-215ENST00000515516 ZFYVE9O95405 1425 aa20.57■□□□□ 0.88
TCOF1-215ENST00000515516 E9PCH4 1651 aa20.57■□□□□ 0.88
TCOF1-215ENST00000515516 NAIPQ13075 1403 aa20.56■□□□□ 0.88
TCOF1-215ENST00000515516 NUTM2DQ5VT03 806 aaPredicted RBP20.56■□□□□ 0.88
TCOF1-215ENST00000515516 STRCP1A6NGW2 1772 aa20.55■□□□□ 0.88
TCOF1-215ENST00000515516 TMEM131LA2VDJ0 1609 aa20.54■□□□□ 0.88
TCOF1-215ENST00000515516 ZNF326Q5BKZ1 582 aaKnown RBP20.54■□□□□ 0.88
TCOF1-215ENST00000515516 TBX22Q9Y458 520 aa20.54■□□□□ 0.88
TCOF1-215ENST00000515516 TMEM94Q12767 1356 aa20.54■□□□□ 0.88
TCOF1-215ENST00000515516 RBM33Q96EV2 1170 aaKnown RBP20.51■□□□□ 0.87
TCOF1-215ENST00000515516 HFM1A2PYH4 1435 aa20.51■□□□□ 0.87
TCOF1-215ENST00000515516 SLC4A1APQ9BWU0 796 aaKnown RBP20.48■□□□□ 0.87
TCOF1-215ENST00000515516 NKTRP30414 1462 aaKnown RBP20.48■□□□□ 0.87
TCOF1-215ENST00000515516 ALKQ9UM73 1620 aa20.47■□□□□ 0.87
TCOF1-215ENST00000515516 MSH6P52701 1360 aa20.46■□□□□ 0.87
TCOF1-215ENST00000515516 C14orf37Q86TY3 774 aa20.46■□□□□ 0.87
TCOF1-215ENST00000515516 ILDR2Q71H61 639 aa20.45■□□□□ 0.86
TCOF1-215ENST00000515516 PIK3R4Q99570 1358 aa20.44■□□□□ 0.86
TCOF1-215ENST00000515516 NWD1Q149M9 1564 aa20.43■□□□□ 0.86
TCOF1-215ENST00000515516 FAM135BQ49AJ0 1406 aa20.43■□□□□ 0.86
TCOF1-215ENST00000515516 ADAMTS13Q76LX8 1427 aa20.43■□□□□ 0.86
TCOF1-215ENST00000515516 MYO5BQ9ULV0 1848 aa20.42■□□□□ 0.86
TCOF1-215ENST00000515516 AMOTL2Q9Y2J4 779 aa20.41■□□□□ 0.86
TCOF1-215ENST00000515516 DIP2AQ14689 1571 aa20.4■□□□□ 0.86
TCOF1-215ENST00000515516 SPHKAPQ2M3C7 1700 aa20.4■□□□□ 0.86
TCOF1-215ENST00000515516 SLAIN2Q9P270 581 aa20.4■□□□□ 0.86
TCOF1-215ENST00000515516 TRPM2O94759 1503 aa20.39■□□□□ 0.85
TCOF1-215ENST00000515516 NCOA3Q9Y6Q9 1424 aa20.39■□□□□ 0.85
TCOF1-215ENST00000515516 PHF23Q9BUL5 403 aaPredicted RBP20.39■□□□□ 0.85
TCOF1-215ENST00000515516 VGFO15240 615 aaPredicted RBP20.37■□□□□ 0.85
TCOF1-215ENST00000515516 ATF3P18847 181 aa20.37■□□□□ 0.85
TCOF1-215ENST00000515516 ACIN1Q9UKV3 1341 aaKnown RBP20.36■□□□□ 0.85
TCOF1-215ENST00000515516 C19orf44Q9H6X5 657 aa20.36■□□□□ 0.85
TCOF1-215ENST00000515516 XIRP1Q702N8 1843 aaKnown RBP20.36■□□□□ 0.85
TCOF1-215ENST00000515516 SOCS7O14512 581 aa20.35■□□□□ 0.85
TCOF1-215ENST00000515516 CADPS2Q86UW7 1296 aa20.35■□□□□ 0.85
TCOF1-215ENST00000515516 CLTCL1P53675 1640 aa20.35■□□□□ 0.85
TCOF1-215ENST00000515516 RPGRIP1LQ68CZ1 1315 aa20.34■□□□□ 0.85
TCOF1-215ENST00000515516 FOXD1Q16676 465 aa20.34■□□□□ 0.85
TCOF1-215ENST00000515516 MED1Q15648 1581 aaPredicted RBP20.34■□□□□ 0.85
TCOF1-215ENST00000515516 CHD2O14647 1828 aaKnown RBP20.33■□□□□ 0.85
TCOF1-215ENST00000515516 MPHOSPH9Q99550 1183 aa20.33■□□□□ 0.85
TCOF1-215ENST00000515516 SETBP1Q9Y6X0 1596 aa20.31■□□□□ 0.84
TCOF1-215ENST00000515516 PTPRUQ92729 1446 aa20.31■□□□□ 0.84
TCOF1-215ENST00000515516 METP08581 1390 aa20.3■□□□□ 0.84
TCOF1-215ENST00000515516 NEXMIFQ5QGS0 1516 aa20.28■□□□□ 0.84
TCOF1-215ENST00000515516 CCDC144AA2RUR9 1427 aa20.27■□□□□ 0.84
TCOF1-215ENST00000515516 SETD5Q9C0A6 1442 aa20.27■□□□□ 0.83
TCOF1-215ENST00000515516 ROBO1Q9Y6N7 1651 aa20.26■□□□□ 0.83
TCOF1-215ENST00000515516 KIF1BO60333 1816 aa20.25■□□□□ 0.83
TCOF1-215ENST00000515516 RGL3Q3MIN7 710 aa20.25■□□□□ 0.83
TCOF1-215ENST00000515516 NRXN3Q9Y4C0 1643 aa20.24■□□□□ 0.83
TCOF1-215ENST00000515516 DCCP43146 1447 aa20.21■□□□□ 0.83
TCOF1-215ENST00000515516 JCADQ9P266 1359 aa20.21■□□□□ 0.83
TCOF1-215ENST00000515516 BRINP3Q76B58 766 aa20.19■□□□□ 0.82
TCOF1-215ENST00000515516 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.19■□□□□ 0.82
TCOF1-215ENST00000515516 XRN1Q8IZH2 1706 aaKnown RBP20.18■□□□□ 0.82
TCOF1-215ENST00000515516 ANKRD30BQ9BXX2 1392 aa20.18■□□□□ 0.82
TCOF1-215ENST00000515516 RAB3GAP2Q9H2M9 1393 aa20.17■□□□□ 0.82
TCOF1-215ENST00000515516 ADGRF5Q8IZF2 1346 aa20.16■□□□□ 0.82
TCOF1-215ENST00000515516 ADGRL3Q9HAR2 1447 aa20.16■□□□□ 0.82
TCOF1-215ENST00000515516 PHLPP1O60346 1717 aa20.14■□□□□ 0.81
TCOF1-215ENST00000515516 PTCH1Q13635 1447 aa20.14■□□□□ 0.81
TCOF1-215ENST00000515516 SPATA31E1Q6ZUB1 1445 aa20.14■□□□□ 0.81
TCOF1-215ENST00000515516 ROBO2Q9HCK4 1378 aa20.13■□□□□ 0.81
TCOF1-215ENST00000515516 MST1RQ04912 1400 aa20.12■□□□□ 0.81
TCOF1-215ENST00000515516 SPATA31A6Q5VVP1 1343 aa20.12■□□□□ 0.81
TCOF1-215ENST00000515516 MEX3CQ5U5Q3 659 aaKnown RBP20.12■□□□□ 0.81
TCOF1-215ENST00000515516 RGS17Q9UGC6 210 aaPredicted RBP20.12■□□□□ 0.81
TCOF1-215ENST00000515516 STK26Q9P289 416 aa20.11■□□□□ 0.81
TCOF1-215ENST00000515516 AHDC1Q5TGY3 1603 aaPredicted RBP20.09■□□□□ 0.81
TCOF1-215ENST00000515516 PPLO60437 1756 aa20.08■□□□□ 0.81
TCOF1-215ENST00000515516 ASXL1Q8IXJ9 1541 aa20.08■□□□□ 0.81
TCOF1-215ENST00000515516 HRCP23327 699 aa20.08■□□□□ 0.81
TCOF1-215ENST00000515516 LRRC59Q96AG4 307 aaKnown RBP20.08■□□□□ 0.81
TCOF1-215ENST00000515516 COL16A1Q07092 1604 aaPredicted RBP20.07■□□□□ 0.8
TCOF1-215ENST00000515516 TMEM132EQ6IEE7 984 aa20.07■□□□□ 0.8
TCOF1-215ENST00000515516 PRAG1Q86YV5 1406 aa20.07■□□□□ 0.8
TCOF1-215ENST00000515516 LRPPRCP42704 1394 aaKnown RBP20.06■□□□□ 0.8
TCOF1-215ENST00000515516 C1orf167Q5SNV9 1468 aa20.05■□□□□ 0.8
TCOF1-215ENST00000515516 NUTM2BA6NNL0 878 aaPredicted RBP20.05■□□□□ 0.8
TCOF1-215ENST00000515516 NUTM2EB1AL46 878 aaPredicted RBP20.05■□□□□ 0.8
TCOF1-215ENST00000515516 NUTM2AQ8IVF1 878 aaPredicted RBP20.05■□□□□ 0.8
TCOF1-215ENST00000515516 POTEAQ6S8J7 498 aa20.04■□□□□ 0.8
TCOF1-215ENST00000515516 DDX17Q92841 729 aaKnown RBP20.04■□□□□ 0.8
TCOF1-215ENST00000515516 PIK3C2GO75747 1445 aa20.03■□□□□ 0.8
TCOF1-215ENST00000515516 WAPLQ7Z5K2 1190 aa20.03■□□□□ 0.8
TCOF1-215ENST00000515516 C14orf93Q9H972 538 aaKnown RBP20.03■□□□□ 0.8
TCOF1-215ENST00000515516 ABCC11Q96J66 1382 aa20.03■□□□□ 0.8
TCOF1-215ENST00000515516 SETD1AO15047 1707 aaKnown RBP20.02■□□□□ 0.8
TCOF1-215ENST00000515516 ORAI2Q96SN7 254 aa20.02■□□□□ 0.8
TCOF1-215ENST00000515516 ZNF772Q68DY9 489 aaPredicted RBP20.01■□□□□ 0.79
TCOF1-215ENST00000515516 NALCNQ8IZF0 1738 aa20.01■□□□□ 0.79
TCOF1-215ENST00000515516 DHX57Q6P158 1386 aaKnown RBP20■□□□□ 0.79
TCOF1-215ENST00000515516 ESCO1Q5FWF5 840 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms