RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 NOS1P29475 1434 aa30.13■■■□□ 2.41
USP53-208ENST00000514305 RPRD2Q5VT52 1461 aaKnown RBP30.12■■■□□ 2.41
USP53-208ENST00000514305 LRRC7Q96NW7 1537 aa30.12■■■□□ 2.41
USP53-208ENST00000514305 GCC2Q8IWJ2 1684 aa30.11■■■□□ 2.41
USP53-208ENST00000514305 ADGRB3O60242 1522 aa30.1■■■□□ 2.41
USP53-208ENST00000514305 UNC13BO14795 1591 aa30.09■■■□□ 2.41
USP53-208ENST00000514305 ACIN1Q9UKV3 1341 aaKnown RBP30.08■■■□□ 2.41
USP53-208ENST00000514305 SLC52A1Q9NWF4 448 aa30.08■■■□□ 2.41
USP53-208ENST00000514305 KCNA4P22459 653 aa30.05■■■□□ 2.4
USP53-208ENST00000514305 HSPA1LP34931 641 aa30.04■■■□□ 2.4
USP53-208ENST00000514305 HFM1A2PYH4 1435 aa30.04■■■□□ 2.4
USP53-208ENST00000514305 ALKQ9UM73 1620 aa30.03■■■□□ 2.4
USP53-208ENST00000514305 ILDR2Q71H61 639 aa30.02■■■□□ 2.4
USP53-208ENST00000514305 MYO5BQ9ULV0 1848 aa30.01■■■□□ 2.39
USP53-208ENST00000514305 XIRP1Q702N8 1843 aaKnown RBP29.99■■■□□ 2.39
USP53-208ENST00000514305 NAIPQ13075 1403 aa29.98■■■□□ 2.39
USP53-208ENST00000514305 IQGAP3Q86VI3 1631 aa29.98■■■□□ 2.39
USP53-208ENST00000514305 E9PCH4 1651 aa29.98■■■□□ 2.39
USP53-208ENST00000514305 BCANQ96GW7 911 aa29.94■■■□□ 2.38
USP53-208ENST00000514305 SETD5Q9C0A6 1442 aa29.94■■■□□ 2.38
USP53-208ENST00000514305 SLC26A8Q96RN1 970 aa29.93■■■□□ 2.38
USP53-208ENST00000514305 TMEM131LA2VDJ0 1609 aa29.93■■■□□ 2.38
USP53-208ENST00000514305 HDGFP51858 240 aaKnown RBP29.91■■■□□ 2.38
USP53-208ENST00000514305 MED1Q15648 1581 aaPredicted RBP29.9■■■□□ 2.38
USP53-208ENST00000514305 NUP155O75694 1391 aa29.9■■■□□ 2.38
USP53-208ENST00000514305 PPP1R15AO75807 674 aaPredicted RBP29.89■■■□□ 2.38
USP53-208ENST00000514305 KCNA6P17658 529 aa29.89■■■□□ 2.38
USP53-208ENST00000514305 HRCP23327 699 aa29.88■■■□□ 2.37
USP53-208ENST00000514305 ZFYVE9O95405 1425 aa29.88■■■□□ 2.37
USP53-208ENST00000514305 RIMS2Q9UQ26 1411 aa29.88■■■□□ 2.37
USP53-208ENST00000514305 SOCS7O14512 581 aa29.87■■■□□ 2.37
USP53-208ENST00000514305 CHGAP10645 457 aaKnown RBP29.87■■■□□ 2.37
USP53-208ENST00000514305 NWD1Q149M9 1564 aa29.86■■■□□ 2.37
USP53-208ENST00000514305 TMEM94Q12767 1356 aa29.85■■■□□ 2.37
USP53-208ENST00000514305 PLEKHG1Q9ULL1 1385 aa29.85■■■□□ 2.37
USP53-208ENST00000514305 NKTRP30414 1462 aaKnown RBP29.85■■■□□ 2.37
USP53-208ENST00000514305 PROSER2Q86WR7 435 aaPredicted RBP29.83■■■□□ 2.37
USP53-208ENST00000514305 TRIM52Q96A61 297 aa29.83■■■□□ 2.37
USP53-208ENST00000514305 RNF39Q9H2S5 420 aa29.83■■■□□ 2.37
USP53-208ENST00000514305 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.82■■■□□ 2.36
USP53-208ENST00000514305 CHD2O14647 1828 aaKnown RBP29.8■■■□□ 2.36
USP53-208ENST00000514305 PCGF6Q9BYE7 350 aa29.79■■■□□ 2.36
USP53-208ENST00000514305 RAB3GAP2Q9H2M9 1393 aa29.78■■■□□ 2.36
USP53-208ENST00000514305 SPHKAPQ2M3C7 1700 aa29.78■■■□□ 2.36
USP53-208ENST00000514305 DIP2AQ14689 1571 aa29.73■■■□□ 2.35
USP53-208ENST00000514305 RBM33Q96EV2 1170 aaKnown RBP29.73■■■□□ 2.35
USP53-208ENST00000514305 MSH6P52701 1360 aa29.73■■■□□ 2.35
USP53-208ENST00000514305 FAM135BQ49AJ0 1406 aa29.72■■■□□ 2.35
USP53-208ENST00000514305 CACNB1Q02641 598 aaPredicted RBP29.72■■■□□ 2.35
USP53-208ENST00000514305 TBX22Q9Y458 520 aa29.72■■■□□ 2.35
USP53-208ENST00000514305 ROBO1Q9Y6N7 1651 aa29.7■■■□□ 2.35
USP53-208ENST00000514305 NUTM2DQ5VT03 806 aaPredicted RBP29.7■■■□□ 2.35
USP53-208ENST00000514305 SLC4A1APQ9BWU0 796 aaKnown RBP29.67■■■□□ 2.34
USP53-208ENST00000514305 ADAMTS13Q76LX8 1427 aa29.66■■■□□ 2.34
USP53-208ENST00000514305 TRPM2O94759 1503 aa29.64■■■□□ 2.34
USP53-208ENST00000514305 PIK3R4Q99570 1358 aa29.64■■■□□ 2.33
USP53-208ENST00000514305 NCOA3Q9Y6Q9 1424 aa29.61■■■□□ 2.33
USP53-208ENST00000514305 ZNF326Q5BKZ1 582 aaKnown RBP29.6■■■□□ 2.33
USP53-208ENST00000514305 C14orf37Q86TY3 774 aa29.6■■■□□ 2.33
USP53-208ENST00000514305 KIF1BO60333 1816 aa29.59■■■□□ 2.33
USP53-208ENST00000514305 MPHOSPH9Q99550 1183 aa29.59■■■□□ 2.33
USP53-208ENST00000514305 CLTCL1P53675 1640 aa29.58■■■□□ 2.33
USP53-208ENST00000514305 SLAIN2Q9P270 581 aa29.58■■■□□ 2.33
USP53-208ENST00000514305 SETBP1Q9Y6X0 1596 aa29.56■■■□□ 2.32
USP53-208ENST00000514305 PHLPP1O60346 1717 aa29.55■■■□□ 2.32
USP53-208ENST00000514305 NRXN3Q9Y4C0 1643 aa29.54■■■□□ 2.32
USP53-208ENST00000514305 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.54■■■□□ 2.32
USP53-208ENST00000514305 AMOTL2Q9Y2J4 779 aa29.52■■■□□ 2.32
USP53-208ENST00000514305 CADPS2Q86UW7 1296 aa29.49■■■□□ 2.31
USP53-208ENST00000514305 C19orf44Q9H6X5 657 aa29.49■■■□□ 2.31
USP53-208ENST00000514305 NEXMIFQ5QGS0 1516 aa29.49■■■□□ 2.31
USP53-208ENST00000514305 XRN1Q8IZH2 1706 aaKnown RBP29.48■■■□□ 2.31
USP53-208ENST00000514305 PTPRUQ92729 1446 aa29.48■■■□□ 2.31
USP53-208ENST00000514305 ATF3P18847 181 aa29.48■■■□□ 2.31
USP53-208ENST00000514305 COL16A1Q07092 1604 aaPredicted RBP29.41■■■□□ 2.3
USP53-208ENST00000514305 JCADQ9P266 1359 aa29.4■■■□□ 2.3
USP53-208ENST00000514305 DCCP43146 1447 aa29.4■■■□□ 2.3
USP53-208ENST00000514305 METP08581 1390 aa29.39■■■□□ 2.3
USP53-208ENST00000514305 RGS17Q9UGC6 210 aaPredicted RBP29.37■■■□□ 2.29
USP53-208ENST00000514305 AHDC1Q5TGY3 1603 aaPredicted RBP29.36■■■□□ 2.29
USP53-208ENST00000514305 VGFO15240 615 aaPredicted RBP29.36■■■□□ 2.29
USP53-208ENST00000514305 C1QBPQ07021 282 aaKnown RBP29.35■■■□□ 2.29
USP53-208ENST00000514305 PPLO60437 1756 aa29.33■■■□□ 2.29
USP53-208ENST00000514305 RPGRIP1LQ68CZ1 1315 aa29.32■■■□□ 2.28
USP53-208ENST00000514305 SETD1AO15047 1707 aaKnown RBP29.3■■■□□ 2.28
USP53-208ENST00000514305 NALCNQ8IZF0 1738 aa29.3■■■□□ 2.28
USP53-208ENST00000514305 CCDC144AA2RUR9 1427 aa29.29■■■□□ 2.28
USP53-208ENST00000514305 DHX57Q6P158 1386 aaKnown RBP29.29■■■□□ 2.28
USP53-208ENST00000514305 SHPRHQ149N8 1683 aa29.29■■■□□ 2.28
USP53-208ENST00000514305 ADGRL3Q9HAR2 1447 aa29.28■■■□□ 2.28
USP53-208ENST00000514305 BRINP3Q76B58 766 aa29.28■■■□□ 2.28
USP53-208ENST00000514305 SPATA31A6Q5VVP1 1343 aa29.27■■■□□ 2.28
USP53-208ENST00000514305 ASXL1Q8IXJ9 1541 aa29.27■■■□□ 2.28
USP53-208ENST00000514305 MST1RQ04912 1400 aa29.27■■■□□ 2.28
USP53-208ENST00000514305 ANKRD30BQ9BXX2 1392 aa29.26■■■□□ 2.27
USP53-208ENST00000514305 PTCH1Q13635 1447 aa29.24■■■□□ 2.27
USP53-208ENST00000514305 POTEAQ6S8J7 498 aa29.23■■■□□ 2.27
USP53-208ENST00000514305 NHSL1Q5SYE7 1610 aa29.23■■■□□ 2.27
USP53-208ENST00000514305 MEX3CQ5U5Q3 659 aaKnown RBP29.21■■■□□ 2.27
USP53-208ENST00000514305 CLSPNQ9HAW4 1339 aa29.2■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms