RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 KIF3BO15066 747 aa12.57□□□□□ -0.4
VCAN-210ENST00000513960 RTEL1-TNFRSF6BF6WH68 1400 aa12.57□□□□□ -0.4
VCAN-210ENST00000513960 STAC3Q96MF2 364 aa12.57□□□□□ -0.4
VCAN-210ENST00000513960 FRAT2O75474 233 aaPredicted RBP12.57□□□□□ -0.4
VCAN-210ENST00000513960 CDCA8Q53HL2 280 aa12.57□□□□□ -0.4
VCAN-210ENST00000513960 PRDM15P57071 1507 aaPredicted RBP12.56□□□□□ -0.4
VCAN-210ENST00000513960 KNSTRNQ9Y448 316 aa12.56□□□□□ -0.4
VCAN-210ENST00000513960 RNF123Q5XPI4 1314 aa12.56□□□□□ -0.4
VCAN-210ENST00000513960 PDE3BQ13370 1112 aa12.55□□□□□ -0.4
VCAN-210ENST00000513960 E9PCH4 1651 aa12.55□□□□□ -0.4
VCAN-210ENST00000513960 SLKQ9H2G2 1235 aaPredicted RBP12.55□□□□□ -0.4
VCAN-210ENST00000513960 LAMC1P11047 1609 aa12.54□□□□□ -0.4
VCAN-210ENST00000513960 MS4A1P11836 297 aa12.54□□□□□ -0.4
VCAN-210ENST00000513960 FANCAO15360 1455 aa12.54□□□□□ -0.4
VCAN-210ENST00000513960 WDR7Q9Y4E6 1490 aa12.54□□□□□ -0.4
VCAN-210ENST00000513960 NAP1L5Q96NT1 182 aaPredicted RBP12.53□□□□□ -0.4
VCAN-210ENST00000513960 NPM1P06748 294 aaKnown RBP eCLIP12.53□□□□□ -0.4
VCAN-210ENST00000513960 SCAPERQ9BY12 1400 aa12.53□□□□□ -0.4
VCAN-210ENST00000513960 ARAP3Q8WWN8 1544 aa12.53□□□□□ -0.4
VCAN-210ENST00000513960 UBE2Q2Q8WVN8 375 aa12.52□□□□□ -0.41
VCAN-210ENST00000513960 ZFYVE16Q7Z3T8 1539 aa12.52□□□□□ -0.41
VCAN-210ENST00000513960 CANXP27824 592 aaKnown RBP12.51□□□□□ -0.41
VCAN-210ENST00000513960 SPRYD3Q8NCJ5 442 aa12.51□□□□□ -0.41
VCAN-210ENST00000513960 ADGRL1O94910 1474 aa12.5□□□□□ -0.41
VCAN-210ENST00000513960 WDR43Q15061 677 aaKnown RBP eCLIP12.5□□□□□ -0.41
VCAN-210ENST00000513960 EIF3AQ14152 1382 aaKnown RBP12.5□□□□□ -0.41
VCAN-210ENST00000513960 TRPM2O94759 1503 aa12.5□□□□□ -0.41
VCAN-210ENST00000513960 ATP7AQ04656 1500 aa12.49□□□□□ -0.41
VCAN-210ENST00000513960 PTPRTO14522 1441 aa12.49□□□□□ -0.41
VCAN-210ENST00000513960 SCAF11Q99590 1463 aaKnown RBP12.49□□□□□ -0.41
VCAN-210ENST00000513960 GZF1Q9H116 711 aaPredicted RBP12.49□□□□□ -0.41
VCAN-210ENST00000513960 SLC24A1O60721 1099 aa12.48□□□□□ -0.41
VCAN-210ENST00000513960 C20orf194Q5TEA3 1177 aa12.48□□□□□ -0.41
VCAN-210ENST00000513960 CHGAP10645 457 aaKnown RBP12.48□□□□□ -0.41
VCAN-210ENST00000513960 GLIPR1L2Q4G1C9 344 aa12.47□□□□□ -0.41
VCAN-210ENST00000513960 RSPH6AQ9H0K4 717 aa12.47□□□□□ -0.41
VCAN-210ENST00000513960 FAM161AQ3B820 660 aa12.46□□□□□ -0.41
VCAN-210ENST00000513960 ASXL2Q76L83 1435 aa12.46□□□□□ -0.41
VCAN-210ENST00000513960 PPP2R1AP30153 589 aa12.46□□□□□ -0.42
VCAN-210ENST00000513960 MADDQ8WXG6 1647 aa12.46□□□□□ -0.42
VCAN-210ENST00000513960 RNF17Q9BXT8 1623 aaKnown RBP12.46□□□□□ -0.42
VCAN-210ENST00000513960 CFAP70Q5T0N1 1121 aa12.45□□□□□ -0.42
VCAN-210ENST00000513960 ADAMTS8Q9UP79 889 aa12.45□□□□□ -0.42
VCAN-210ENST00000513960 SPHKAPQ2M3C7 1700 aa12.45□□□□□ -0.42
VCAN-210ENST00000513960 TET3O43151 1660 aa12.45□□□□□ -0.42
VCAN-210ENST00000513960 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.45□□□□□ -0.42
VCAN-210ENST00000513960 INSRP06213 1382 aa12.45□□□□□ -0.42
VCAN-210ENST00000513960 CLTCL1P53675 1640 aa12.45□□□□□ -0.42
VCAN-210ENST00000513960 AMER1Q5JTC6 1135 aaPredicted RBP12.44□□□□□ -0.42
VCAN-210ENST00000513960 VSIG10Q8N0Z9 540 aa12.44□□□□□ -0.42
VCAN-210ENST00000513960 POGKQ9P215 609 aa12.44□□□□□ -0.42
VCAN-210ENST00000513960 ABCA9Q8IUA7 1624 aa12.43□□□□□ -0.42
VCAN-210ENST00000513960 CEP152O94986 1710 aa12.43□□□□□ -0.42
VCAN-210ENST00000513960 DEPDC5O75140 1603 aa12.43□□□□□ -0.42
VCAN-210ENST00000513960 INO80Q9ULG1 1556 aaPredicted RBP12.43□□□□□ -0.42
VCAN-210ENST00000513960 BLMP54132 1417 aaPredicted RBP12.43□□□□□ -0.42
VCAN-210ENST00000513960 BECN1Q14457 450 aa12.42□□□□□ -0.42
VCAN-210ENST00000513960 GGT6Q6P531 493 aa12.42□□□□□ -0.42
VCAN-210ENST00000513960 ADGRF5Q8IZF2 1346 aa12.42□□□□□ -0.42
VCAN-210ENST00000513960 ZMYM4Q5VZL5 1548 aa12.41□□□□□ -0.42
VCAN-210ENST00000513960 CENPQQ7L2Z9 268 aaPredicted RBP12.41□□□□□ -0.42
VCAN-210ENST00000513960 IQGAP1P46940 1657 aa12.41□□□□□ -0.42
VCAN-210ENST00000513960 OSCARQ8IYS5 282 aa12.41□□□□□ -0.42
VCAN-210ENST00000513960 UPF2Q9HAU5 1272 aaKnown RBP12.41□□□□□ -0.42
VCAN-210ENST00000513960 FAM43AQ8N2R8 423 aa12.4□□□□□ -0.42
VCAN-210ENST00000513960 ZNF518AQ6AHZ1 1483 aa12.4□□□□□ -0.42
VCAN-210ENST00000513960 ASXL1Q8IXJ9 1541 aa12.39□□□□□ -0.43
VCAN-210ENST00000513960 VWDEQ8N2E2 1590 aa12.39□□□□□ -0.43
VCAN-210ENST00000513960 CCDC146Q8IYE0 955 aa12.39□□□□□ -0.43
VCAN-210ENST00000513960 PNNQ9H307 717 aaKnown RBP12.39□□□□□ -0.43
VCAN-210ENST00000513960 PKNOX2Q96KN3 472 aa12.39□□□□□ -0.43
VCAN-210ENST00000513960 SYNMO15061 1565 aa12.39□□□□□ -0.43
VCAN-210ENST00000513960 GOLGA2Q08379 1002 aa12.38□□□□□ -0.43
VCAN-210ENST00000513960 UGGT1Q9NYU2 1555 aa12.38□□□□□ -0.43
VCAN-210ENST00000513960 CD109Q6YHK3 1445 aa12.38□□□□□ -0.43
VCAN-210ENST00000513960 NPC1L1Q9UHC9 1359 aa12.37□□□□□ -0.43
VCAN-210ENST00000513960 L1TD1Q5T7N2 865 aaKnown RBP12.37□□□□□ -0.43
VCAN-210ENST00000513960 MYOM2P54296 1465 aa12.37□□□□□ -0.43
VCAN-210ENST00000513960 NEUROD2Q15784 382 aa12.37□□□□□ -0.43
VCAN-210ENST00000513960 CENPJQ9HC77 1338 aaPredicted RBP12.36□□□□□ -0.43
VCAN-210ENST00000513960 TRAK1Q9UPV9 953 aa12.36□□□□□ -0.43
VCAN-210ENST00000513960 EFCAB6Q5THR3 1501 aa12.36□□□□□ -0.43
VCAN-210ENST00000513960 PIK3C2GO75747 1445 aa12.36□□□□□ -0.43
VCAN-210ENST00000513960 MAP3K4Q9Y6R4 1608 aa12.35□□□□□ -0.43
VCAN-210ENST00000513960 KIF1BO60333 1816 aa12.35□□□□□ -0.43
VCAN-210ENST00000513960 NOS1P29475 1434 aa12.35□□□□□ -0.43
VCAN-210ENST00000513960 HSP90AA1P07900 732 aaKnown RBP12.35□□□□□ -0.43
VCAN-210ENST00000513960 NEURL4Q96JN8 1562 aa12.35□□□□□ -0.43
VCAN-210ENST00000513960 KIAA1210Q9ULL0 1709 aa12.34□□□□□ -0.43
VCAN-210ENST00000513960 KDM5AP29375 1690 aaKnown RBP12.34□□□□□ -0.43
VCAN-210ENST00000513960 MROH1Q8NDA8 1641 aa12.34□□□□□ -0.43
VCAN-210ENST00000513960 HSP90AA2PQ14568 343 aaPredicted RBP12.34□□□□□ -0.43
VCAN-210ENST00000513960 C8orf34Q49A92 452 aa12.34□□□□□ -0.43
VCAN-210ENST00000513960 KIDINS220Q9ULH0 1771 aa12.34□□□□□ -0.43
VCAN-210ENST00000513960 PLEKHH1Q9ULM0 1364 aa12.33□□□□□ -0.43
VCAN-210ENST00000513960 GOLGA6L3A6NEY3 463 aa12.33□□□□□ -0.44
VCAN-210ENST00000513960 APAF1O14727 1248 aa12.33□□□□□ -0.44
VCAN-210ENST00000513960 DUSP27Q5VZP5 1158 aa12.33□□□□□ -0.44
VCAN-210ENST00000513960 ERVK-7P63135 1459 aa12.33□□□□□ -0.44
VCAN-210ENST00000513960 RRAGDQ9NQL2 400 aaPredicted RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms