RNA–Protein interactions for RNA: ENST00000512019.1

SMAD1-211, Transcript of SMAD family member 1, humanhuman

TSL 2

Gene SMAD1, Length 847 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-211ENST00000512019 NOS1P29475 1434 aa29.03■■■□□ 2.24
SMAD1-211ENST00000512019 STAG3Q9UJ98 1225 aa29.03■■■□□ 2.24
SMAD1-211ENST00000512019 EID1Q9Y6B2 187 aa29.03■■■□□ 2.24
SMAD1-211ENST00000512019 MYO5BQ9ULV0 1848 aa29.02■■■□□ 2.24
SMAD1-211ENST00000512019 TRIM52Q96A61 297 aa29.02■■■□□ 2.24
SMAD1-211ENST00000512019 SENP3Q9H4L4 574 aaPredicted RBP29.01■■■□□ 2.23
SMAD1-211ENST00000512019 ADGRB3O60242 1522 aa29■■■□□ 2.23
SMAD1-211ENST00000512019 TET3O43151 1660 aa28.96■■■□□ 2.23
SMAD1-211ENST00000512019 RPRD2Q5VT52 1461 aaKnown RBP28.91■■■□□ 2.22
SMAD1-211ENST00000512019 SLC26A8Q96RN1 970 aa28.9■■■□□ 2.22
SMAD1-211ENST00000512019 SLC4A1APQ9BWU0 796 aaKnown RBP28.88■■■□□ 2.21
SMAD1-211ENST00000512019 SLC52A1Q9NWF4 448 aa28.88■■■□□ 2.21
SMAD1-211ENST00000512019 E9PCH4 1651 aa28.87■■■□□ 2.21
SMAD1-211ENST00000512019 TMEM131LA2VDJ0 1609 aa28.87■■■□□ 2.21
SMAD1-211ENST00000512019 TMEM94Q12767 1356 aa28.86■■■□□ 2.21
SMAD1-211ENST00000512019 NWD1Q149M9 1564 aa28.85■■■□□ 2.21
SMAD1-211ENST00000512019 KCNA6P17658 529 aa28.84■■■□□ 2.21
SMAD1-211ENST00000512019 RBM33Q96EV2 1170 aaKnown RBP28.84■■■□□ 2.21
SMAD1-211ENST00000512019 MPHOSPH9Q99550 1183 aa28.84■■■□□ 2.21
SMAD1-211ENST00000512019 ZFYVE9O95405 1425 aa28.83■■■□□ 2.21
SMAD1-211ENST00000512019 CHD2O14647 1828 aaKnown RBP28.81■■■□□ 2.2
SMAD1-211ENST00000512019 PROSER2Q86WR7 435 aaPredicted RBP28.79■■■□□ 2.2
SMAD1-211ENST00000512019 PHF23Q9BUL5 403 aaPredicted RBP28.79■■■□□ 2.2
SMAD1-211ENST00000512019 RIMS2Q9UQ26 1411 aa28.78■■■□□ 2.2
SMAD1-211ENST00000512019 ROBO1Q9Y6N7 1651 aa28.78■■■□□ 2.2
SMAD1-211ENST00000512019 BCANQ96GW7 911 aa28.78■■■□□ 2.2
SMAD1-211ENST00000512019 NKTRP30414 1462 aaKnown RBP28.77■■■□□ 2.2
SMAD1-211ENST00000512019 FAM135BQ49AJ0 1406 aa28.75■■■□□ 2.19
SMAD1-211ENST00000512019 PLEKHG1Q9ULL1 1385 aa28.75■■■□□ 2.19
SMAD1-211ENST00000512019 CHGAP10645 457 aaKnown RBP28.72■■■□□ 2.19
SMAD1-211ENST00000512019 SPHKAPQ2M3C7 1700 aa28.72■■■□□ 2.19
SMAD1-211ENST00000512019 PPP1R15AO75807 674 aaPredicted RBP28.7■■■□□ 2.18
SMAD1-211ENST00000512019 DHX57Q6P158 1386 aaKnown RBP28.7■■■□□ 2.18
SMAD1-211ENST00000512019 NUTM2DQ5VT03 806 aaPredicted RBP28.69■■■□□ 2.18
SMAD1-211ENST00000512019 TRPM2O94759 1503 aa28.68■■■□□ 2.18
SMAD1-211ENST00000512019 FOXD1Q16676 465 aa28.66■■■□□ 2.18
SMAD1-211ENST00000512019 MSH6P52701 1360 aa28.64■■■□□ 2.18
SMAD1-211ENST00000512019 ADAMTS13Q76LX8 1427 aa28.64■■■□□ 2.18
SMAD1-211ENST00000512019 HDGFP51858 240 aaKnown RBP28.64■■■□□ 2.18
SMAD1-211ENST00000512019 RGS17Q9UGC6 210 aaPredicted RBP28.63■■■□□ 2.17
SMAD1-211ENST00000512019 PHLPP1O60346 1717 aa28.63■■■□□ 2.17
SMAD1-211ENST00000512019 TBX22Q9Y458 520 aa28.62■■■□□ 2.17
SMAD1-211ENST00000512019 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.61■■■□□ 2.17
SMAD1-211ENST00000512019 DIP2AQ14689 1571 aa28.6■■■□□ 2.17
SMAD1-211ENST00000512019 ANKRD30BQ9BXX2 1392 aa28.59■■■□□ 2.17
SMAD1-211ENST00000512019 CCDC144AA2RUR9 1427 aa28.58■■■□□ 2.17
SMAD1-211ENST00000512019 SLAIN2Q9P270 581 aa28.57■■■□□ 2.16
SMAD1-211ENST00000512019 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.57■■■□□ 2.16
SMAD1-211ENST00000512019 CLTCL1P53675 1640 aa28.55■■■□□ 2.16
SMAD1-211ENST00000512019 NRXN3Q9Y4C0 1643 aa28.55■■■□□ 2.16
SMAD1-211ENST00000512019 PTPRUQ92729 1446 aa28.52■■■□□ 2.16
SMAD1-211ENST00000512019 COL16A1Q07092 1604 aaPredicted RBP28.51■■■□□ 2.15
SMAD1-211ENST00000512019 NCOA3Q9Y6Q9 1424 aa28.5■■■□□ 2.15
SMAD1-211ENST00000512019 PIK3R4Q99570 1358 aa28.5■■■□□ 2.15
SMAD1-211ENST00000512019 C14orf37Q86TY3 774 aa28.49■■■□□ 2.15
SMAD1-211ENST00000512019 CCER1Q8TC90 406 aaPredicted RBP28.49■■■□□ 2.15
SMAD1-211ENST00000512019 CLSPNQ9HAW4 1339 aa28.47■■■□□ 2.15
SMAD1-211ENST00000512019 XRN1Q8IZH2 1706 aaKnown RBP28.47■■■□□ 2.15
SMAD1-211ENST00000512019 KIF1BO60333 1816 aa28.46■■■□□ 2.15
SMAD1-211ENST00000512019 SETBP1Q9Y6X0 1596 aa28.45■■■□□ 2.15
SMAD1-211ENST00000512019 POTEAQ6S8J7 498 aa28.45■■■□□ 2.14
SMAD1-211ENST00000512019 AMOTL2Q9Y2J4 779 aa28.45■■■□□ 2.14
SMAD1-211ENST00000512019 JCADQ9P266 1359 aa28.42■■■□□ 2.14
SMAD1-211ENST00000512019 ZNF326Q5BKZ1 582 aaKnown RBP28.41■■■□□ 2.14
SMAD1-211ENST00000512019 C19orf44Q9H6X5 657 aa28.41■■■□□ 2.14
SMAD1-211ENST00000512019 NEXMIFQ5QGS0 1516 aa28.41■■■□□ 2.14
SMAD1-211ENST00000512019 AHDC1Q5TGY3 1603 aaPredicted RBP28.4■■■□□ 2.14
SMAD1-211ENST00000512019 CADPS2Q86UW7 1296 aa28.39■■■□□ 2.14
SMAD1-211ENST00000512019 ATF3P18847 181 aa28.38■■■□□ 2.13
SMAD1-211ENST00000512019 SPATA31E1Q6ZUB1 1445 aa28.37■■■□□ 2.13
SMAD1-211ENST00000512019 METP08581 1390 aa28.37■■■□□ 2.13
SMAD1-211ENST00000512019 SHPRHQ149N8 1683 aa28.36■■■□□ 2.13
SMAD1-211ENST00000512019 LRP6O75581 1613 aa28.36■■■□□ 2.13
SMAD1-211ENST00000512019 SETD1AO15047 1707 aaKnown RBP28.35■■■□□ 2.13
SMAD1-211ENST00000512019 SIN3AQ96ST3 1273 aa28.34■■■□□ 2.13
SMAD1-211ENST00000512019 NALCNQ8IZF0 1738 aa28.32■■■□□ 2.12
SMAD1-211ENST00000512019 NEUROD1Q13562 356 aa28.31■■■□□ 2.12
SMAD1-211ENST00000512019 BRINP3Q76B58 766 aa28.3■■■□□ 2.12
SMAD1-211ENST00000512019 DCCP43146 1447 aa28.29■■■□□ 2.12
SMAD1-211ENST00000512019 NHSL1Q5SYE7 1610 aa28.29■■■□□ 2.12
SMAD1-211ENST00000512019 MST1RQ04912 1400 aa28.28■■■□□ 2.12
SMAD1-211ENST00000512019 ASXL1Q8IXJ9 1541 aa28.28■■■□□ 2.12
SMAD1-211ENST00000512019 RPGRIP1LQ68CZ1 1315 aa28.27■■■□□ 2.12
SMAD1-211ENST00000512019 RGL3Q3MIN7 710 aa28.27■■■□□ 2.12
SMAD1-211ENST00000512019 SPATA31A6Q5VVP1 1343 aa28.26■■■□□ 2.11
SMAD1-211ENST00000512019 PPLO60437 1756 aa28.24■■■□□ 2.11
SMAD1-211ENST00000512019 ADGRL3Q9HAR2 1447 aa28.23■■■□□ 2.11
SMAD1-211ENST00000512019 TONSLQ96HA7 1378 aa28.23■■■□□ 2.11
SMAD1-211ENST00000512019 IFT172Q9UG01 1749 aa28.22■■■□□ 2.11
SMAD1-211ENST00000512019 MEX3CQ5U5Q3 659 aaKnown RBP28.2■■■□□ 2.1
SMAD1-211ENST00000512019 MYOM2P54296 1465 aa28.17■■■□□ 2.1
SMAD1-211ENST00000512019 VGFO15240 615 aaPredicted RBP28.16■■■□□ 2.1
SMAD1-211ENST00000512019 DDX17Q92841 729 aaKnown RBP28.16■■■□□ 2.1
SMAD1-211ENST00000512019 STAC3Q96MF2 364 aa28.16■■■□□ 2.1
SMAD1-211ENST00000512019 NUTM2BA6NNL0 878 aaPredicted RBP28.15■■■□□ 2.1
SMAD1-211ENST00000512019 NUTM2EB1AL46 878 aaPredicted RBP28.15■■■□□ 2.1
SMAD1-211ENST00000512019 NUTM2AQ8IVF1 878 aaPredicted RBP28.15■■■□□ 2.1
SMAD1-211ENST00000512019 DCAF11Q8TEB1 546 aa28.14■■■□□ 2.1
SMAD1-211ENST00000512019 L3MBTL2Q969R5 705 aa28.14■■■□□ 2.1
SMAD1-211ENST00000512019 TIMELESSQ9UNS1 1208 aa28.14■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms