RNA–Protein interactions for RNA: ENST00000509409.5

TPM3-219, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 1,248 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-219ENST00000509409 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.4■■□□□ 1.34
TPM3-219ENST00000509409 TET3O43151 1660 aa23.39■■□□□ 1.34
TPM3-219ENST00000509409 RIMS2Q9UQ26 1411 aa23.39■■□□□ 1.33
TPM3-219ENST00000509409 TMEM94Q12767 1356 aa23.39■■□□□ 1.33
TPM3-219ENST00000509409 ALKQ9UM73 1620 aa23.38■■□□□ 1.33
TPM3-219ENST00000509409 NUTM2DQ5VT03 806 aaPredicted RBP23.38■■□□□ 1.33
TPM3-219ENST00000509409 UNC13BO14795 1591 aa23.36■■□□□ 1.33
TPM3-219ENST00000509409 PHF23Q9BUL5 403 aaPredicted RBP23.35■■□□□ 1.33
TPM3-219ENST00000509409 PLEKHG1Q9ULL1 1385 aa23.35■■□□□ 1.33
TPM3-219ENST00000509409 ZFYVE9O95405 1425 aa23.33■■□□□ 1.33
TPM3-219ENST00000509409 TBX22Q9Y458 520 aa23.32■■□□□ 1.32
TPM3-219ENST00000509409 GCC2Q8IWJ2 1684 aa23.32■■□□□ 1.32
TPM3-219ENST00000509409 MED1Q15648 1581 aaPredicted RBP23.28■■□□□ 1.32
TPM3-219ENST00000509409 TMEM131LA2VDJ0 1609 aa23.28■■□□□ 1.32
TPM3-219ENST00000509409 IQGAP3Q86VI3 1631 aa23.28■■□□□ 1.32
TPM3-219ENST00000509409 E9PCH4 1651 aa23.28■■□□□ 1.32
TPM3-219ENST00000509409 MSH6P52701 1360 aa23.27■■□□□ 1.32
TPM3-219ENST00000509409 FAM135BQ49AJ0 1406 aa23.27■■□□□ 1.32
TPM3-219ENST00000509409 ZNF326Q5BKZ1 582 aaKnown RBP23.27■■□□□ 1.32
TPM3-219ENST00000509409 C14orf37Q86TY3 774 aa23.26■■□□□ 1.31
TPM3-219ENST00000509409 NKTRP30414 1462 aaKnown RBP23.24■■□□□ 1.31
TPM3-219ENST00000509409 TRIM52Q96A61 297 aa23.24■■□□□ 1.31
TPM3-219ENST00000509409 SLAIN2Q9P270 581 aa23.24■■□□□ 1.31
TPM3-219ENST00000509409 XIRP1Q702N8 1843 aaKnown RBP23.24■■□□□ 1.31
TPM3-219ENST00000509409 MYO5BQ9ULV0 1848 aa23.24■■□□□ 1.31
TPM3-219ENST00000509409 RRBP1Q9P2E9 1410 aaKnown RBP23.24■■□□□ 1.31
TPM3-219ENST00000509409 NWD1Q149M9 1564 aa23.19■■□□□ 1.3
TPM3-219ENST00000509409 AMOTL2Q9Y2J4 779 aa23.19■■□□□ 1.3
TPM3-219ENST00000509409 ADAMTS13Q76LX8 1427 aa23.18■■□□□ 1.3
TPM3-219ENST00000509409 NAIPQ13075 1403 aa23.16■■□□□ 1.3
TPM3-219ENST00000509409 PIK3R4Q99570 1358 aa23.16■■□□□ 1.3
TPM3-219ENST00000509409 ATF3P18847 181 aa23.16■■□□□ 1.3
TPM3-219ENST00000509409 C19orf44Q9H6X5 657 aa23.15■■□□□ 1.3
TPM3-219ENST00000509409 CHD2O14647 1828 aaKnown RBP23.14■■□□□ 1.29
TPM3-219ENST00000509409 NCOA3Q9Y6Q9 1424 aa23.14■■□□□ 1.29
TPM3-219ENST00000509409 CADPS2Q86UW7 1296 aa23.13■■□□□ 1.29
TPM3-219ENST00000509409 SLC4A1APQ9BWU0 796 aaKnown RBP23.12■■□□□ 1.29
TPM3-219ENST00000509409 DIP2AQ14689 1571 aa23.1■■□□□ 1.29
TPM3-219ENST00000509409 ROBO1Q9Y6N7 1651 aa23.1■■□□□ 1.29
TPM3-219ENST00000509409 PTPRUQ92729 1446 aa23.08■■□□□ 1.29
TPM3-219ENST00000509409 TRPM2O94759 1503 aa23.08■■□□□ 1.29
TPM3-219ENST00000509409 SPHKAPQ2M3C7 1700 aa23.08■■□□□ 1.28
TPM3-219ENST00000509409 RGS17Q9UGC6 210 aaPredicted RBP23.07■■□□□ 1.28
TPM3-219ENST00000509409 HFM1A2PYH4 1435 aa23.07■■□□□ 1.28
TPM3-219ENST00000509409 VGFO15240 615 aaPredicted RBP23.04■■□□□ 1.28
TPM3-219ENST00000509409 METP08581 1390 aa23.03■■□□□ 1.28
TPM3-219ENST00000509409 JCADQ9P266 1359 aa23.02■■□□□ 1.28
TPM3-219ENST00000509409 CLTCL1P53675 1640 aa23.01■■□□□ 1.27
TPM3-219ENST00000509409 FOXD1Q16676 465 aa23.01■■□□□ 1.27
TPM3-219ENST00000509409 SETBP1Q9Y6X0 1596 aa22.99■■□□□ 1.27
TPM3-219ENST00000509409 RPGRIP1LQ68CZ1 1315 aa22.99■■□□□ 1.27
TPM3-219ENST00000509409 BRINP3Q76B58 766 aa22.98■■□□□ 1.27
TPM3-219ENST00000509409 PHLPP1O60346 1717 aa22.98■■□□□ 1.27
TPM3-219ENST00000509409 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.97■■□□□ 1.27
TPM3-219ENST00000509409 POTEAQ6S8J7 498 aa22.97■■□□□ 1.27
TPM3-219ENST00000509409 NEXMIFQ5QGS0 1516 aa22.97■■□□□ 1.27
TPM3-219ENST00000509409 MEX3CQ5U5Q3 659 aaKnown RBP22.96■■□□□ 1.27
TPM3-219ENST00000509409 NRXN3Q9Y4C0 1643 aa22.95■■□□□ 1.26
TPM3-219ENST00000509409 RGL3Q3MIN7 710 aa22.93■■□□□ 1.26
TPM3-219ENST00000509409 MPHOSPH9Q99550 1183 aa22.93■■□□□ 1.26
TPM3-219ENST00000509409 KIF1BO60333 1816 aa22.93■■□□□ 1.26
TPM3-219ENST00000509409 DCCP43146 1447 aa22.92■■□□□ 1.26
TPM3-219ENST00000509409 SPATA31A6Q5VVP1 1343 aa22.92■■□□□ 1.26
TPM3-219ENST00000509409 XRN1Q8IZH2 1706 aaKnown RBP22.89■■□□□ 1.26
TPM3-219ENST00000509409 NUTM2BA6NNL0 878 aaPredicted RBP22.89■■□□□ 1.25
TPM3-219ENST00000509409 NUTM2EB1AL46 878 aaPredicted RBP22.89■■□□□ 1.25
TPM3-219ENST00000509409 NUTM2AQ8IVF1 878 aaPredicted RBP22.89■■□□□ 1.25
TPM3-219ENST00000509409 COL16A1Q07092 1604 aaPredicted RBP22.88■■□□□ 1.25
TPM3-219ENST00000509409 CCDC144AA2RUR9 1427 aa22.87■■□□□ 1.25
TPM3-219ENST00000509409 MST1RQ04912 1400 aa22.87■■□□□ 1.25
TPM3-219ENST00000509409 ADGRL3Q9HAR2 1447 aa22.87■■□□□ 1.25
TPM3-219ENST00000509409 LRRC59Q96AG4 307 aaKnown RBP22.86■■□□□ 1.25
TPM3-219ENST00000509409 AHDC1Q5TGY3 1603 aaPredicted RBP22.86■■□□□ 1.25
TPM3-219ENST00000509409 DDX17Q92841 729 aaKnown RBP22.85■■□□□ 1.25
TPM3-219ENST00000509409 ROBO2Q9HCK4 1378 aa22.84■■□□□ 1.25
TPM3-219ENST00000509409 ADGRF5Q8IZF2 1346 aa22.83■■□□□ 1.25
TPM3-219ENST00000509409 ZNF772Q68DY9 489 aaPredicted RBP22.83■■□□□ 1.25
TPM3-219ENST00000509409 ACIN1Q9UKV3 1341 aaKnown RBP22.82■■□□□ 1.24
TPM3-219ENST00000509409 ASXL1Q8IXJ9 1541 aa22.82■■□□□ 1.24
TPM3-219ENST00000509409 STK26Q9P289 416 aa22.82■■□□□ 1.24
TPM3-219ENST00000509409 PTCH1Q13635 1447 aa22.81■■□□□ 1.24
TPM3-219ENST00000509409 LRP6O75581 1613 aa22.79■■□□□ 1.24
TPM3-219ENST00000509409 ORAI2Q96SN7 254 aa22.79■■□□□ 1.24
TPM3-219ENST00000509409 SETD5Q9C0A6 1442 aa22.79■■□□□ 1.24
TPM3-219ENST00000509409 C1orf167Q5SNV9 1468 aa22.78■■□□□ 1.24
TPM3-219ENST00000509409 ANKRD30BQ9BXX2 1392 aa22.77■■□□□ 1.24
TPM3-219ENST00000509409 TMEM132EQ6IEE7 984 aa22.76■■□□□ 1.23
TPM3-219ENST00000509409 SPATA31E1Q6ZUB1 1445 aa22.74■■□□□ 1.23
TPM3-219ENST00000509409 WAPLQ7Z5K2 1190 aa22.74■■□□□ 1.23
TPM3-219ENST00000509409 PPLO60437 1756 aa22.73■■□□□ 1.23
TPM3-219ENST00000509409 RXRBP28702 533 aa22.73■■□□□ 1.23
TPM3-219ENST00000509409 ESCO1Q5FWF5 840 aa22.73■■□□□ 1.23
TPM3-219ENST00000509409 SHPRHQ149N8 1683 aa22.73■■□□□ 1.23
TPM3-219ENST00000509409 NALCNQ8IZF0 1738 aa22.73■■□□□ 1.23
TPM3-219ENST00000509409 C8orf37Q96NL8 207 aa22.72■■□□□ 1.23
TPM3-219ENST00000509409 AFF2P51816 1311 aa22.72■■□□□ 1.23
TPM3-219ENST00000509409 NUTM2FA1L443 756 aa22.7■■□□□ 1.22
TPM3-219ENST00000509409 LRPPRCP42704 1394 aaKnown RBP22.7■■□□□ 1.22
TPM3-219ENST00000509409 PNPLA6Q8IY17 1366 aa22.7■■□□□ 1.22
TPM3-219ENST00000509409 SETD1AO15047 1707 aaKnown RBP22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms