RNA–Protein interactions for RNA: ENST00000509330.5

PHF3-209, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best) BASIC

Gene PHF3, Length 2,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-209ENST00000509330 LMTK2Q8IWU2 1503 aa20.29■□□□□ 0.84
PHF3-209ENST00000509330 GLI2P10070 1586 aa20.28■□□□□ 0.84
PHF3-209ENST00000509330 TRAK1Q9UPV9 953 aa20.27■□□□□ 0.84
PHF3-209ENST00000509330 KIF1BO60333 1816 aa20.27■□□□□ 0.84
PHF3-209ENST00000509330 IDI1Q13907 227 aa20.26■□□□□ 0.83
PHF3-209ENST00000509330 SCAF11Q99590 1463 aaKnown RBP20.25■□□□□ 0.83
PHF3-209ENST00000509330 IRX6P78412 446 aaPredicted RBP20.25■□□□□ 0.83
PHF3-209ENST00000509330 PER1O15534 1290 aaPredicted RBP20.23■□□□□ 0.83
PHF3-209ENST00000509330 CAMSAP1Q5T5Y3 1602 aa20.23■□□□□ 0.83
PHF3-209ENST00000509330 LAMC1P11047 1609 aa20.23■□□□□ 0.83
PHF3-209ENST00000509330 SIGLEC1Q9BZZ2 1709 aa20.23■□□□□ 0.83
PHF3-209ENST00000509330 SALL2Q9Y467 1007 aaPredicted RBP20.22■□□□□ 0.83
PHF3-209ENST00000509330 KTN1Q86UP2 1357 aaKnown RBP20.21■□□□□ 0.83
PHF3-209ENST00000509330 STAC3Q96MF2 364 aa20.21■□□□□ 0.83
PHF3-209ENST00000509330 ADGRB3O60242 1522 aa20.21■□□□□ 0.83
PHF3-209ENST00000509330 MYBBP1AQ9BQG0 1328 aaKnown RBP20.2■□□□□ 0.82
PHF3-209ENST00000509330 NEFLP07196 543 aa20.2■□□□□ 0.82
PHF3-209ENST00000509330 SAFB2Q14151 953 aaKnown RBP eCLIP20.2■□□□□ 0.826e-6■■■□□ 18.1
PHF3-209ENST00000509330 RALBP1Q15311 655 aa20.18■□□□□ 0.82
PHF3-209ENST00000509330 IQGAP1P46940 1657 aa20.18■□□□□ 0.82
PHF3-209ENST00000509330 EIF3AQ14152 1382 aaKnown RBP20.18■□□□□ 0.82
PHF3-209ENST00000509330 MYOM2P54296 1465 aa20.18■□□□□ 0.82
PHF3-209ENST00000509330 PNISRQ8TF01 805 aaKnown RBP20.18■□□□□ 0.82
PHF3-209ENST00000509330 SYNMO15061 1565 aa20.17■□□□□ 0.82
PHF3-209ENST00000509330 STAG3Q9UJ98 1225 aa20.17■□□□□ 0.82
PHF3-209ENST00000509330 STK26Q9P289 416 aa20.16■□□□□ 0.82
PHF3-209ENST00000509330 KNSTRNQ9Y448 316 aa20.15■□□□□ 0.82
PHF3-209ENST00000509330 PLPPR3Q6T4P5 718 aa20.14■□□□□ 0.82
PHF3-209ENST00000509330 C14orf93Q9H972 538 aaKnown RBP20.13■□□□□ 0.81
PHF3-209ENST00000509330 ZBED9Q6R2W3 1325 aa20.13■□□□□ 0.81
PHF3-209ENST00000509330 CENPJQ9HC77 1338 aaPredicted RBP20.12■□□□□ 0.81
PHF3-209ENST00000509330 PARD3Q8TEW0 1356 aa20.12■□□□□ 0.81
PHF3-209ENST00000509330 PIK3C2GO75747 1445 aa20.12■□□□□ 0.81
PHF3-209ENST00000509330 IFT172Q9UG01 1749 aa20.12■□□□□ 0.81
PHF3-209ENST00000509330 NLRP13Q86W25 1043 aa20.12■□□□□ 0.81
PHF3-209ENST00000509330 CDCA8Q53HL2 280 aa20.11■□□□□ 0.81
PHF3-209ENST00000509330 ZMYM4Q5VZL5 1548 aa20.11■□□□□ 0.81
PHF3-209ENST00000509330 VGFO15240 615 aaPredicted RBP20.11■□□□□ 0.81
PHF3-209ENST00000509330 SLC52A1Q9NWF4 448 aa20.1■□□□□ 0.81
PHF3-209ENST00000509330 KIF13AQ9H1H9 1805 aa20.09■□□□□ 0.81
PHF3-209ENST00000509330 NRXN1Q9ULB1 1477 aa20.09■□□□□ 0.81
PHF3-209ENST00000509330 BRD4O60885 1362 aaPredicted RBP20.09■□□□□ 0.81
PHF3-209ENST00000509330 NEURL4Q96JN8 1562 aa20.09■□□□□ 0.81
PHF3-209ENST00000509330 ESF1Q9H501 851 aaKnown RBP20.09■□□□□ 0.81
PHF3-209ENST00000509330 ARHGAP31Q2M1Z3 1444 aa20.08■□□□□ 0.8
PHF3-209ENST00000509330 PPLO60437 1756 aa20.08■□□□□ 0.8
PHF3-209ENST00000509330 RPGRIP1LQ68CZ1 1315 aa20.08■□□□□ 0.8
PHF3-209ENST00000509330 ERVK-7P63135 1459 aa20.07■□□□□ 0.8
PHF3-209ENST00000509330 KIAA1210Q9ULL0 1709 aa20.05■□□□□ 0.8
PHF3-209ENST00000509330 TRHP20396 242 aaPredicted RBP20.05■□□□□ 0.8
PHF3-209ENST00000509330 AMER1Q5JTC6 1135 aaPredicted RBP20.05■□□□□ 0.8
PHF3-209ENST00000509330 NEXMIFQ5QGS0 1516 aa20.04■□□□□ 0.8
PHF3-209ENST00000509330 PREX1Q8TCU6 1659 aa20.04■□□□□ 0.8
PHF3-209ENST00000509330 SLC12A5Q9H2X9 1139 aa20.04■□□□□ 0.8
PHF3-209ENST00000509330 PIK3C2BO00750 1634 aa20.04■□□□□ 0.8
PHF3-209ENST00000509330 ZC3H13Q5T200 1668 aaKnown RBP20.04■□□□□ 0.8
PHF3-209ENST00000509330 MYO5BQ9ULV0 1848 aa20.03■□□□□ 0.8
PHF3-209ENST00000509330 TNNT2P45379 298 aaPredicted RBP20.03■□□□□ 0.8
PHF3-209ENST00000509330 CLTCQ00610 1675 aaKnown RBP20.03■□□□□ 0.8
PHF3-209ENST00000509330 CARD14Q9BXL6 1004 aa20.02■□□□□ 0.8
PHF3-209ENST00000509330 ADGRB1O14514 1584 aa20.01■□□□□ 0.79
PHF3-209ENST00000509330 CABP2Q9NPB3 220 aa20.01■□□□□ 0.79
PHF3-209ENST00000509330 PPP2R1AP30153 589 aa20■□□□□ 0.79
PHF3-209ENST00000509330 KDM5AP29375 1690 aaKnown RBP19.99■□□□□ 0.79
PHF3-209ENST00000509330 LRPPRCP42704 1394 aaKnown RBP19.99■□□□□ 0.79
PHF3-209ENST00000509330 MINK1Q8N4C8 1332 aaPredicted RBP19.98■□□□□ 0.79
PHF3-209ENST00000509330 MYOM1P52179 1685 aa19.98■□□□□ 0.79
PHF3-209ENST00000509330 TMEM131LA2VDJ0 1609 aa19.96■□□□□ 0.79
PHF3-209ENST00000509330 CEBPAP49715 358 aaPredicted RBP19.96■□□□□ 0.79
PHF3-209ENST00000509330 PRAM1Q96QH2 718 aa19.96■□□□□ 0.79
PHF3-209ENST00000509330 SETBP1Q9Y6X0 1596 aa19.96■□□□□ 0.79
PHF3-209ENST00000509330 ARHGEF40Q8TER5 1519 aa19.95■□□□□ 0.78
PHF3-209ENST00000509330 POGKQ9P215 609 aa19.95■□□□□ 0.78
PHF3-209ENST00000509330 SRPK2P78362 688 aaKnown RBP19.95■□□□□ 0.78
PHF3-209ENST00000509330 ADAMTS8Q9UP79 889 aa19.95■□□□□ 0.78
PHF3-209ENST00000509330 ZMYM3Q14202 1370 aa19.95■□□□□ 0.78
PHF3-209ENST00000509330 AGLP35573 1532 aa19.94■□□□□ 0.78
PHF3-209ENST00000509330 ASXL1Q8IXJ9 1541 aa19.94■□□□□ 0.78
PHF3-209ENST00000509330 QRICH2Q9H0J4 1663 aa19.94■□□□□ 0.78
PHF3-209ENST00000509330 NUDCQ9Y266 331 aa19.93■□□□□ 0.78
PHF3-209ENST00000509330 WDR43Q15061 677 aaKnown RBP eCLIP19.92■□□□□ 0.78
PHF3-209ENST00000509330 NSD3Q9BZ95 1437 aa19.92■□□□□ 0.78
PHF3-209ENST00000509330 CDCA7LQ96GN5 454 aa19.92■□□□□ 0.78
PHF3-209ENST00000509330 EVC2Q86UK5 1308 aa19.91■□□□□ 0.78
PHF3-209ENST00000509330 SLC24A1O60721 1099 aa19.91■□□□□ 0.78
PHF3-209ENST00000509330 CCDC146Q8IYE0 955 aa19.91■□□□□ 0.78
PHF3-209ENST00000509330 WAPLQ7Z5K2 1190 aa19.9■□□□□ 0.78
PHF3-209ENST00000509330 SBNO2Q9Y2G9 1366 aa19.9■□□□□ 0.78
PHF3-209ENST00000509330 PPP6R1Q9UPN7 881 aa19.9■□□□□ 0.78
PHF3-209ENST00000509330 REREQ9P2R6 1566 aa19.9■□□□□ 0.78
PHF3-209ENST00000509330 MYO3AQ8NEV4 1616 aa19.88■□□□□ 0.77
PHF3-209ENST00000509330 A2ML1A8K2U0 1454 aa19.88■□□□□ 0.77
PHF3-209ENST00000509330 RIMS2Q9UQ26 1411 aa19.87■□□□□ 0.77
PHF3-209ENST00000509330 MORC1Q86VD1 984 aa19.87■□□□□ 0.77
PHF3-209ENST00000509330 SMG6Q86US8 1419 aaKnown RBP19.87■□□□□ 0.77
PHF3-209ENST00000509330 YTHDC2Q9H6S0 1430 aaKnown RBP19.87■□□□□ 0.77
PHF3-209ENST00000509330 ARHGEF28Q8N1W1 1705 aaKnown RBP19.86■□□□□ 0.77
PHF3-209ENST00000509330 TULP4Q9NRJ4 1543 aa19.86■□□□□ 0.77
PHF3-209ENST00000509330 PELP1Q8IZL8 1130 aaKnown RBP19.85■□□□□ 0.77
PHF3-209ENST00000509330 ZFYVE9O95405 1425 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms