RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 CLTCL1P53675 1640 aa12.4□□□□□ -0.42
PDGFC-205ENST00000506880 STAG3Q9UJ98 1225 aa12.39□□□□□ -0.43
PDGFC-205ENST00000506880 EID1Q9Y6B2 187 aa12.39□□□□□ -0.43
PDGFC-205ENST00000506880 SCAF11Q99590 1463 aaKnown RBP12.38□□□□□ -0.43
PDGFC-205ENST00000506880 DIP2AQ14689 1571 aa12.37□□□□□ -0.43
PDGFC-205ENST00000506880 STRCQ7RTU9 1775 aa12.37□□□□□ -0.43
PDGFC-205ENST00000506880 MYO5BQ9ULV0 1848 aa12.37□□□□□ -0.43
PDGFC-205ENST00000506880 SPATA31E1Q6ZUB1 1445 aa12.36□□□□□ -0.43
PDGFC-205ENST00000506880 DHX57Q6P158 1386 aaKnown RBP12.34□□□□□ -0.43
PDGFC-205ENST00000506880 PIK3R4Q99570 1358 aa12.34□□□□□ -0.43
PDGFC-205ENST00000506880 PLEKHG1Q9ULL1 1385 aa12.34□□□□□ -0.43
PDGFC-205ENST00000506880 PPLO60437 1756 aa12.34□□□□□ -0.43
PDGFC-205ENST00000506880 VGFO15240 615 aaPredicted RBP12.34□□□□□ -0.43
PDGFC-205ENST00000506880 TIMELESSQ9UNS1 1208 aa12.34□□□□□ -0.43
PDGFC-205ENST00000506880 IQGAP1P46940 1657 aa12.34□□□□□ -0.43
PDGFC-205ENST00000506880 IFT172Q9UG01 1749 aa12.33□□□□□ -0.44
PDGFC-205ENST00000506880 MYOM2P54296 1465 aa12.33□□□□□ -0.44
PDGFC-205ENST00000506880 SETBP1Q9Y6X0 1596 aa12.32□□□□□ -0.44
PDGFC-205ENST00000506880 RIMS2Q9UQ26 1411 aa12.32□□□□□ -0.44
PDGFC-205ENST00000506880 NEXMIFQ5QGS0 1516 aa12.32□□□□□ -0.44
PDGFC-205ENST00000506880 NPHP4O75161 1426 aaPredicted RBP12.31□□□□□ -0.44
PDGFC-205ENST00000506880 LAMC1P11047 1609 aa12.31□□□□□ -0.44
PDGFC-205ENST00000506880 TXNDC2Q86VQ3 553 aa12.3□□□□□ -0.44
PDGFC-205ENST00000506880 PCGF6Q9BYE7 350 aa12.3□□□□□ -0.44
PDGFC-205ENST00000506880 IQSEC2Q5JU85 1478 aa12.29□□□□□ -0.44
PDGFC-205ENST00000506880 PRAG1Q86YV5 1406 aa12.28□□□□□ -0.44
PDGFC-205ENST00000506880 NRXN1Q9ULB1 1477 aa12.28□□□□□ -0.44
PDGFC-205ENST00000506880 TBX22Q9Y458 520 aa12.28□□□□□ -0.44
PDGFC-205ENST00000506880 CPS1P31327 1500 aa12.27□□□□□ -0.44
PDGFC-205ENST00000506880 KIAA1210Q9ULL0 1709 aa12.27□□□□□ -0.45
PDGFC-205ENST00000506880 PPP1R15AO75807 674 aaPredicted RBP12.26□□□□□ -0.45
PDGFC-205ENST00000506880 HSPA2P54652 639 aa12.26□□□□□ -0.45
PDGFC-205ENST00000506880 ZNF326Q5BKZ1 582 aaKnown RBP12.26□□□□□ -0.45
PDGFC-205ENST00000506880 NCOA3Q9Y6Q9 1424 aa12.26□□□□□ -0.45
PDGFC-205ENST00000506880 CHGAP10645 457 aaKnown RBP12.25□□□□□ -0.45
PDGFC-205ENST00000506880 LTKP29376 864 aa12.25□□□□□ -0.45
PDGFC-205ENST00000506880 NKTRP30414 1462 aaKnown RBP12.25□□□□□ -0.45
PDGFC-205ENST00000506880 CHD2O14647 1828 aaKnown RBP12.24□□□□□ -0.45
PDGFC-205ENST00000506880 PIK3C2GO75747 1445 aa12.24□□□□□ -0.45
PDGFC-205ENST00000506880 NWD1Q149M9 1564 aa12.24□□□□□ -0.45
PDGFC-205ENST00000506880 NCKAP5LQ9HCH0 1330 aa12.22□□□□□ -0.45
PDGFC-205ENST00000506880 NRXN3Q9Y4C0 1643 aa12.22□□□□□ -0.45
PDGFC-205ENST00000506880 ADAMTS13Q76LX8 1427 aa12.21□□□□□ -0.45
PDGFC-205ENST00000506880 SETD1AO15047 1707 aaKnown RBP12.21□□□□□ -0.45
PDGFC-205ENST00000506880 ALKQ9UM73 1620 aa12.2□□□□□ -0.46
PDGFC-205ENST00000506880 SIRT1Q96EB6 747 aa12.2□□□□□ -0.46
PDGFC-205ENST00000506880 KNDC1Q76NI1 1749 aa12.2□□□□□ -0.46
PDGFC-205ENST00000506880 KCNA6P17658 529 aa12.19□□□□□ -0.46
PDGFC-205ENST00000506880 TECPR2O15040 1411 aa12.19□□□□□ -0.46
PDGFC-205ENST00000506880 TONSLQ96HA7 1378 aa12.18□□□□□ -0.46
PDGFC-205ENST00000506880 C14orf93Q9H972 538 aaKnown RBP12.18□□□□□ -0.46
PDGFC-205ENST00000506880 PTCH1Q13635 1447 aa12.18□□□□□ -0.46
PDGFC-205ENST00000506880 XRN1Q8IZH2 1706 aaKnown RBP12.17□□□□□ -0.46
PDGFC-205ENST00000506880 LTBP4Q8N2S1 1624 aa12.17□□□□□ -0.46
PDGFC-205ENST00000506880 RGL3Q3MIN7 710 aa12.16□□□□□ -0.46
PDGFC-205ENST00000506880 ABCC11Q96J66 1382 aa12.16□□□□□ -0.46
PDGFC-205ENST00000506880 DLC1Q96QB1 1528 aa12.16□□□□□ -0.46
PDGFC-205ENST00000506880 FAM135BQ49AJ0 1406 aa12.15□□□□□ -0.46
PDGFC-205ENST00000506880 SLC24A1O60721 1099 aa12.15□□□□□ -0.46
PDGFC-205ENST00000506880 DCAF11Q8TEB1 546 aa12.15□□□□□ -0.46
PDGFC-205ENST00000506880 DCCP43146 1447 aa12.14□□□□□ -0.47
PDGFC-205ENST00000506880 CACNB1Q02641 598 aaPredicted RBP12.14□□□□□ -0.47
PDGFC-205ENST00000506880 CCER1Q8TC90 406 aaPredicted RBP12.14□□□□□ -0.47
PDGFC-205ENST00000506880 LRPPRCP42704 1394 aaKnown RBP12.14□□□□□ -0.47
PDGFC-205ENST00000506880 ADGRF5Q8IZF2 1346 aa12.13□□□□□ -0.47
PDGFC-205ENST00000506880 BCANQ96GW7 911 aa12.13□□□□□ -0.47
PDGFC-205ENST00000506880 L3MBTL2Q969R5 705 aa12.12□□□□□ -0.47
PDGFC-205ENST00000506880 GPRASP1Q5JY77 1395 aa12.12□□□□□ -0.47
PDGFC-205ENST00000506880 ADGRB1O14514 1584 aa12.12□□□□□ -0.47
PDGFC-205ENST00000506880 TRPM1Q7Z4N2 1603 aa12.11□□□□□ -0.47
PDGFC-205ENST00000506880 STRCP1A6NGW2 1772 aa12.1□□□□□ -0.47
PDGFC-205ENST00000506880 SLC26A8Q96RN1 970 aa12.1□□□□□ -0.47
PDGFC-205ENST00000506880 LRRC7Q96NW7 1537 aa12.1□□□□□ -0.47
PDGFC-205ENST00000506880 YTHDC2Q9H6S0 1430 aaKnown RBP12.1□□□□□ -0.47
PDGFC-205ENST00000506880 RALGAPBQ86X10 1494 aa12.09□□□□□ -0.47
PDGFC-205ENST00000506880 EIF3AQ14152 1382 aaKnown RBP12.09□□□□□ -0.47
PDGFC-205ENST00000506880 SIN3AQ96ST3 1273 aa12.09□□□□□ -0.47
PDGFC-205ENST00000506880 ZNF335Q9H4Z2 1342 aaPredicted RBP12.09□□□□□ -0.47
PDGFC-205ENST00000506880 METP08581 1390 aa12.08□□□□□ -0.48
PDGFC-205ENST00000506880 NEUROD1Q13562 356 aa12.08□□□□□ -0.48
PDGFC-205ENST00000506880 AMOTL2Q9Y2J4 779 aa12.08□□□□□ -0.48
PDGFC-205ENST00000506880 ASXL1Q8IXJ9 1541 aa12.07□□□□□ -0.48
PDGFC-205ENST00000506880 CERKQ8TCT0 537 aa12.07□□□□□ -0.48
PDGFC-205ENST00000506880 PTPRUQ92729 1446 aa12.07□□□□□ -0.48
PDGFC-205ENST00000506880 XIRP1Q702N8 1843 aaKnown RBP12.07□□□□□ -0.48
PDGFC-205ENST00000506880 SBNO2Q9Y2G9 1366 aa12.06□□□□□ -0.48
PDGFC-205ENST00000506880 ADGRB2O60241 1585 aa12.06□□□□□ -0.48
PDGFC-205ENST00000506880 ADGRL3Q9HAR2 1447 aa12.06□□□□□ -0.48
PDGFC-205ENST00000506880 C19orf44Q9H6X5 657 aa12.06□□□□□ -0.48
PDGFC-205ENST00000506880 MSH6P52701 1360 aa12.05□□□□□ -0.48
PDGFC-205ENST00000506880 NUTM2DQ5VT03 806 aaPredicted RBP12.05□□□□□ -0.48
PDGFC-205ENST00000506880 CADPS2Q86UW7 1296 aa12.05□□□□□ -0.48
PDGFC-205ENST00000506880 PROSER2Q86WR7 435 aaPredicted RBP12.05□□□□□ -0.48
PDGFC-205ENST00000506880 KDM2AQ9Y2K7 1162 aa12.05□□□□□ -0.48
PDGFC-205ENST00000506880 ARHGEF28Q8N1W1 1705 aaKnown RBP12.05□□□□□ -0.48
PDGFC-205ENST00000506880 CDC42BPGQ6DT37 1551 aa12.05□□□□□ -0.48
PDGFC-205ENST00000506880 TOM1O60784 492 aa12.04□□□□□ -0.48
PDGFC-205ENST00000506880 CFAP70Q5T0N1 1121 aa12.04□□□□□ -0.48
PDGFC-205ENST00000506880 ROCK2O75116 1388 aaKnown RBP12.04□□□□□ -0.48
PDGFC-205ENST00000506880 TMEM94Q12767 1356 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms