RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 KCNA6P17658 529 aa19.75■□□□□ 0.75
TCOF1-209ENST00000506630 NUP155O75694 1391 aa19.74■□□□□ 0.75
TCOF1-209ENST00000506630 PROSER2Q86WR7 435 aaPredicted RBP19.74■□□□□ 0.75
TCOF1-209ENST00000506630 NOS1P29475 1434 aa19.73■□□□□ 0.75
TCOF1-209ENST00000506630 RPRD2Q5VT52 1461 aaKnown RBP19.73■□□□□ 0.75
TCOF1-209ENST00000506630 SLC26A8Q96RN1 970 aa19.72■□□□□ 0.75
TCOF1-209ENST00000506630 MYO5BQ9ULV0 1848 aa19.69■□□□□ 0.74
TCOF1-209ENST00000506630 SPHKAPQ2M3C7 1700 aa19.69■□□□□ 0.74
TCOF1-209ENST00000506630 POTEAQ6S8J7 498 aa19.69■□□□□ 0.74
TCOF1-209ENST00000506630 BCANQ96GW7 911 aa19.69■□□□□ 0.74
TCOF1-209ENST00000506630 XIRP1Q702N8 1843 aaKnown RBP19.69■□□□□ 0.74
TCOF1-209ENST00000506630 KDM5AP29375 1690 aaKnown RBP19.68■□□□□ 0.74
TCOF1-209ENST00000506630 RBM33Q96EV2 1170 aaKnown RBP19.67■□□□□ 0.74
TCOF1-209ENST00000506630 SLC52A1Q9NWF4 448 aa19.65■□□□□ 0.74
TCOF1-209ENST00000506630 MSH6P52701 1360 aa19.65■□□□□ 0.74
TCOF1-209ENST00000506630 TRIM52Q96A61 297 aa19.64■□□□□ 0.73
TCOF1-209ENST00000506630 ADGRB3O60242 1522 aa19.64■□□□□ 0.73
TCOF1-209ENST00000506630 ROBO1Q9Y6N7 1651 aa19.63■□□□□ 0.73
TCOF1-209ENST00000506630 SLAIN2Q9P270 581 aa19.63■□□□□ 0.73
TCOF1-209ENST00000506630 NKTRP30414 1462 aaKnown RBP19.62■□□□□ 0.73
TCOF1-209ENST00000506630 HDGFP51858 240 aaKnown RBP19.61■□□□□ 0.73
TCOF1-209ENST00000506630 SETD5Q9C0A6 1442 aa19.59■□□□□ 0.73
TCOF1-209ENST00000506630 TMEM131LA2VDJ0 1609 aa19.58■□□□□ 0.73
TCOF1-209ENST00000506630 JCADQ9P266 1359 aa19.58■□□□□ 0.73
TCOF1-209ENST00000506630 PPP1R15AO75807 674 aaPredicted RBP19.58■□□□□ 0.72
TCOF1-209ENST00000506630 NWD1Q149M9 1564 aa19.57■□□□□ 0.72
TCOF1-209ENST00000506630 KIF1BO60333 1816 aa19.56■□□□□ 0.72
TCOF1-209ENST00000506630 ZFYVE9O95405 1425 aa19.56■□□□□ 0.72
TCOF1-209ENST00000506630 NUTM2DQ5VT03 806 aaPredicted RBP19.55■□□□□ 0.72
TCOF1-209ENST00000506630 CLTCL1P53675 1640 aa19.54■□□□□ 0.72
TCOF1-209ENST00000506630 C14orf37Q86TY3 774 aa19.54■□□□□ 0.72
TCOF1-209ENST00000506630 TRPM2O94759 1503 aa19.54■□□□□ 0.72
TCOF1-209ENST00000506630 PLEKHG1Q9ULL1 1385 aa19.54■□□□□ 0.72
TCOF1-209ENST00000506630 CHGAP10645 457 aaKnown RBP19.53■□□□□ 0.72
TCOF1-209ENST00000506630 SLC4A1APQ9BWU0 796 aaKnown RBP19.53■□□□□ 0.72
TCOF1-209ENST00000506630 RIMS2Q9UQ26 1411 aa19.52■□□□□ 0.72
TCOF1-209ENST00000506630 TBX22Q9Y458 520 aa19.52■□□□□ 0.72
TCOF1-209ENST00000506630 RAB3GAP2Q9H2M9 1393 aa19.52■□□□□ 0.72
TCOF1-209ENST00000506630 PHLPP1O60346 1717 aa19.51■□□□□ 0.71
TCOF1-209ENST00000506630 MEX3CQ5U5Q3 659 aaKnown RBP19.51■□□□□ 0.71
TCOF1-209ENST00000506630 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.51■□□□□ 0.71
TCOF1-209ENST00000506630 NCOA3Q9Y6Q9 1424 aa19.51■□□□□ 0.71
TCOF1-209ENST00000506630 SPATA31A6Q5VVP1 1343 aa19.5■□□□□ 0.71
TCOF1-209ENST00000506630 ZNF772Q68DY9 489 aaPredicted RBP19.49■□□□□ 0.71
TCOF1-209ENST00000506630 CADPS2Q86UW7 1296 aa19.49■□□□□ 0.71
TCOF1-209ENST00000506630 ACIN1Q9UKV3 1341 aaKnown RBP19.48■□□□□ 0.71
TCOF1-209ENST00000506630 ATF3P18847 181 aa19.47■□□□□ 0.71
TCOF1-209ENST00000506630 C19orf44Q9H6X5 657 aa19.47■□□□□ 0.71
TCOF1-209ENST00000506630 CHD2O14647 1828 aaKnown RBP19.46■□□□□ 0.71
TCOF1-209ENST00000506630 FOXD1Q16676 465 aa19.45■□□□□ 0.7
TCOF1-209ENST00000506630 MPHOSPH9Q99550 1183 aa19.45■□□□□ 0.7
TCOF1-209ENST00000506630 ADAMTS13Q76LX8 1427 aa19.44■□□□□ 0.7
TCOF1-209ENST00000506630 COL16A1Q07092 1604 aaPredicted RBP19.43■□□□□ 0.7
TCOF1-209ENST00000506630 PIK3R4Q99570 1358 aa19.43■□□□□ 0.7
TCOF1-209ENST00000506630 SETD1AO15047 1707 aaKnown RBP19.42■□□□□ 0.7
TCOF1-209ENST00000506630 LRP6O75581 1613 aa19.41■□□□□ 0.7
TCOF1-209ENST00000506630 UPF1Q92900 1129 aaKnown RBP eCLIP19.41■□□□□ 0.7
TCOF1-209ENST00000506630 RXRBP28702 533 aa19.39■□□□□ 0.69
TCOF1-209ENST00000506630 ZNF326Q5BKZ1 582 aaKnown RBP19.39■□□□□ 0.69
TCOF1-209ENST00000506630 PPLO60437 1756 aa19.38■□□□□ 0.69
TCOF1-209ENST00000506630 PTPRUQ92729 1446 aa19.38■□□□□ 0.69
TCOF1-209ENST00000506630 AMOTL2Q9Y2J4 779 aa19.38■□□□□ 0.69
TCOF1-209ENST00000506630 NRXN3Q9Y4C0 1643 aa19.38■□□□□ 0.69
TCOF1-209ENST00000506630 AHDC1Q5TGY3 1603 aaPredicted RBP19.37■□□□□ 0.69
TCOF1-209ENST00000506630 DIP2AQ14689 1571 aa19.37■□□□□ 0.69
TCOF1-209ENST00000506630 NEXMIFQ5QGS0 1516 aa19.37■□□□□ 0.69
TCOF1-209ENST00000506630 CCDC144AA2RUR9 1427 aa19.37■□□□□ 0.69
TCOF1-209ENST00000506630 NUTM2BA6NNL0 878 aaPredicted RBP19.37■□□□□ 0.69
TCOF1-209ENST00000506630 NUTM2EB1AL46 878 aaPredicted RBP19.37■□□□□ 0.69
TCOF1-209ENST00000506630 NUTM2AQ8IVF1 878 aaPredicted RBP19.37■□□□□ 0.69
TCOF1-209ENST00000506630 BRINP3Q76B58 766 aa19.36■□□□□ 0.69
TCOF1-209ENST00000506630 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.35■□□□□ 0.69
TCOF1-209ENST00000506630 HRCP23327 699 aa19.34■□□□□ 0.69
TCOF1-209ENST00000506630 SHPRHQ149N8 1683 aa19.33■□□□□ 0.69
TCOF1-209ENST00000506630 IFT172Q9UG01 1749 aa19.33■□□□□ 0.68
TCOF1-209ENST00000506630 DCCP43146 1447 aa19.31■□□□□ 0.68
TCOF1-209ENST00000506630 AFF2P51816 1311 aa19.3■□□□□ 0.68
TCOF1-209ENST00000506630 LRRC59Q96AG4 307 aaKnown RBP19.3■□□□□ 0.68
TCOF1-209ENST00000506630 METP08581 1390 aa19.3■□□□□ 0.68
TCOF1-209ENST00000506630 CDK12Q9NYV4 1490 aaPredicted RBP19.29■□□□□ 0.68
TCOF1-209ENST00000506630 SETBP1Q9Y6X0 1596 aa19.29■□□□□ 0.68
TCOF1-209ENST00000506630 SPATA31E1Q6ZUB1 1445 aa19.26■□□□□ 0.67
TCOF1-209ENST00000506630 TRIM26Q12899 539 aaPredicted RBP19.26■□□□□ 0.67
TCOF1-209ENST00000506630 ASXL1Q8IXJ9 1541 aa19.25■□□□□ 0.67
TCOF1-209ENST00000506630 XRN1Q8IZH2 1706 aaKnown RBP19.25■□□□□ 0.67
TCOF1-209ENST00000506630 C8orf37Q96NL8 207 aa19.25■□□□□ 0.67
TCOF1-209ENST00000506630 MST1RQ04912 1400 aa19.25■□□□□ 0.67
TCOF1-209ENST00000506630 RPGRIP1LQ68CZ1 1315 aa19.25■□□□□ 0.67
TCOF1-209ENST00000506630 ANKRD30BQ9BXX2 1392 aa19.24■□□□□ 0.67
TCOF1-209ENST00000506630 QTRT2Q9H974 415 aaKnown RBP19.24■□□□□ 0.67
TCOF1-209ENST00000506630 RBM6P78332 1123 aaKnown RBP19.23■□□□□ 0.67
TCOF1-209ENST00000506630 RGL3Q3MIN7 710 aa19.23■□□□□ 0.67
TCOF1-209ENST00000506630 VGFO15240 615 aaPredicted RBP19.21■□□□□ 0.67
TCOF1-209ENST00000506630 NGLY1Q96IV0 654 aa19.2■□□□□ 0.66
TCOF1-209ENST00000506630 PNPLA6Q8IY17 1366 aa19.19■□□□□ 0.66
TCOF1-209ENST00000506630 DDX17Q92841 729 aaKnown RBP19.19■□□□□ 0.66
TCOF1-209ENST00000506630 ADGRL3Q9HAR2 1447 aa19.18■□□□□ 0.66
TCOF1-209ENST00000506630 NHSL1Q5SYE7 1610 aa19.17■□□□□ 0.66
TCOF1-209ENST00000506630 RGS12O14924 1447 aa19.17■□□□□ 0.66
TCOF1-209ENST00000506630 ADAMTS2O95450 1211 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms