RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 TXNDC2Q86VQ3 553 aa11.89□□□□□ -0.51
LIMCH1-206ENST00000505705 ADGRB3O60242 1522 aa11.88□□□□□ -0.51
LIMCH1-206ENST00000505705 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.88□□□□□ -0.51
LIMCH1-206ENST00000505705 KIF1BO60333 1816 aa11.88□□□□□ -0.51
LIMCH1-206ENST00000505705 ZNF142P52746 1687 aaPredicted RBP11.87□□□□□ -0.51
LIMCH1-206ENST00000505705 NCKAP5LQ9HCH0 1330 aa11.87□□□□□ -0.51
LIMCH1-206ENST00000505705 UBR1Q8IWV7 1749 aa11.87□□□□□ -0.51
LIMCH1-206ENST00000505705 KDM2AQ9Y2K7 1162 aa11.87□□□□□ -0.51
LIMCH1-206ENST00000505705 TMEM2Q9UHN6 1383 aa11.87□□□□□ -0.51
LIMCH1-206ENST00000505705 TMEM131LA2VDJ0 1609 aa11.86□□□□□ -0.51
LIMCH1-206ENST00000505705 RIMS2Q9UQ26 1411 aa11.86□□□□□ -0.51
LIMCH1-206ENST00000505705 RPGRIP1LQ68CZ1 1315 aa11.86□□□□□ -0.51
LIMCH1-206ENST00000505705 CLSPNQ9HAW4 1339 aa11.86□□□□□ -0.51
LIMCH1-206ENST00000505705 VGFO15240 615 aaPredicted RBP11.85□□□□□ -0.51
LIMCH1-206ENST00000505705 DCAF11Q8TEB1 546 aa11.85□□□□□ -0.51
LIMCH1-206ENST00000505705 LTKP29376 864 aa11.84□□□□□ -0.51
LIMCH1-206ENST00000505705 KDM5AP29375 1690 aaKnown RBP11.84□□□□□ -0.51
LIMCH1-206ENST00000505705 TONSLQ96HA7 1378 aa11.83□□□□□ -0.52
LIMCH1-206ENST00000505705 MYO5BQ9ULV0 1848 aa11.83□□□□□ -0.52
LIMCH1-206ENST00000505705 SPATA31E1Q6ZUB1 1445 aa11.82□□□□□ -0.52
LIMCH1-206ENST00000505705 SLIT1O75093 1534 aa11.81□□□□□ -0.52
LIMCH1-206ENST00000505705 SCAF11Q99590 1463 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-206ENST00000505705 ARHGAP23Q9P227 1491 aa11.81□□□□□ -0.52
LIMCH1-206ENST00000505705 L3MBTL2Q969R5 705 aa11.8□□□□□ -0.52
LIMCH1-206ENST00000505705 NPHP4O75161 1426 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-206ENST00000505705 ZFYVE9O95405 1425 aa11.79□□□□□ -0.52
LIMCH1-206ENST00000505705 CNKSR2Q8WXI2 1034 aa11.79□□□□□ -0.52
LIMCH1-206ENST00000505705 STAC3Q96MF2 364 aa11.79□□□□□ -0.52
LIMCH1-206ENST00000505705 SLC26A8Q96RN1 970 aa11.79□□□□□ -0.52
LIMCH1-206ENST00000505705 ADGRF5Q8IZF2 1346 aa11.79□□□□□ -0.52
LIMCH1-206ENST00000505705 NEURL4Q96JN8 1562 aa11.79□□□□□ -0.52
LIMCH1-206ENST00000505705 NEXMIFQ5QGS0 1516 aa11.78□□□□□ -0.52
LIMCH1-206ENST00000505705 HOXD11P31277 338 aaPredicted RBP11.78□□□□□ -0.52
LIMCH1-206ENST00000505705 PLEKHG1Q9ULL1 1385 aa11.78□□□□□ -0.52
LIMCH1-206ENST00000505705 TIMELESSQ9UNS1 1208 aa11.76□□□□□ -0.53
LIMCH1-206ENST00000505705 POLR1AO95602 1720 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-206ENST00000505705 PPLO60437 1756 aa11.75□□□□□ -0.53
LIMCH1-206ENST00000505705 STRCQ7RTU9 1775 aa11.75□□□□□ -0.53
LIMCH1-206ENST00000505705 MED14O60244 1454 aa11.75□□□□□ -0.53
LIMCH1-206ENST00000505705 TBX22Q9Y458 520 aa11.74□□□□□ -0.53
LIMCH1-206ENST00000505705 IQGAP1P46940 1657 aa11.74□□□□□ -0.53
LIMCH1-206ENST00000505705 MYOM2P54296 1465 aa11.73□□□□□ -0.53
LIMCH1-206ENST00000505705 CFAP70Q5T0N1 1121 aa11.73□□□□□ -0.53
LIMCH1-206ENST00000505705 IFT172Q9UG01 1749 aa11.72□□□□□ -0.53
LIMCH1-206ENST00000505705 C14orf93Q9H972 538 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-206ENST00000505705 PIK3C2GO75747 1445 aa11.7□□□□□ -0.54
LIMCH1-206ENST00000505705 ADAMTS13Q76LX8 1427 aa11.7□□□□□ -0.54
LIMCH1-206ENST00000505705 TMEM132EQ6IEE7 984 aa11.7□□□□□ -0.54
LIMCH1-206ENST00000505705 RNF216Q9NWF9 866 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-206ENST00000505705 STK26Q9P289 416 aa11.7□□□□□ -0.54
LIMCH1-206ENST00000505705 ZNF335Q9H4Z2 1342 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-206ENST00000505705 ALKQ9UM73 1620 aa11.69□□□□□ -0.54
LIMCH1-206ENST00000505705 KCNA6P17658 529 aa11.69□□□□□ -0.54
LIMCH1-206ENST00000505705 AMOTL2Q9Y2J4 779 aa11.69□□□□□ -0.54
LIMCH1-206ENST00000505705 SETBP1Q9Y6X0 1596 aa11.69□□□□□ -0.54
LIMCH1-206ENST00000505705 PRAG1Q86YV5 1406 aa11.69□□□□□ -0.54
LIMCH1-206ENST00000505705 METP08581 1390 aa11.68□□□□□ -0.54
LIMCH1-206ENST00000505705 DIP2AQ14689 1571 aa11.68□□□□□ -0.54
LIMCH1-206ENST00000505705 NBPF8Q3BBV2 869 aa11.68□□□□□ -0.54
LIMCH1-206ENST00000505705 NRXN1Q9ULB1 1477 aa11.68□□□□□ -0.54
LIMCH1-206ENST00000505705 ROCK2O75116 1388 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-206ENST00000505705 PIK3R4Q99570 1358 aa11.67□□□□□ -0.54
LIMCH1-206ENST00000505705 NBPF1Q3BBV0 1214 aa11.66□□□□□ -0.54
LIMCH1-206ENST00000505705 PROSER2Q86WR7 435 aaPredicted RBP11.66□□□□□ -0.54
LIMCH1-206ENST00000505705 TRAK1Q9UPV9 953 aa11.66□□□□□ -0.54
LIMCH1-206ENST00000505705 NRXN3Q9Y4C0 1643 aa11.66□□□□□ -0.54
LIMCH1-206ENST00000505705 C14orf37Q86TY3 774 aa11.65□□□□□ -0.54
LIMCH1-206ENST00000505705 CARD11Q9BXL7 1154 aa11.65□□□□□ -0.54
LIMCH1-206ENST00000505705 LAMC1P11047 1609 aa11.64□□□□□ -0.55
LIMCH1-206ENST00000505705 ZEB1P37275 1124 aaPredicted RBP11.64□□□□□ -0.55
LIMCH1-206ENST00000505705 POGKQ9P215 609 aa11.64□□□□□ -0.55
LIMCH1-206ENST00000505705 PTPRUQ92729 1446 aa11.63□□□□□ -0.55
LIMCH1-206ENST00000505705 YTHDC2Q9H6S0 1430 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-206ENST00000505705 RBM33Q96EV2 1170 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-206ENST00000505705 SAFB2Q14151 953 aaKnown RBP eCLIP11.62□□□□□ -0.55
LIMCH1-206ENST00000505705 LRPPRCP42704 1394 aaKnown RBP11.62□□□□□ -0.55
LIMCH1-206ENST00000505705 WAPLQ7Z5K2 1190 aa11.61□□□□□ -0.55
LIMCH1-206ENST00000505705 CHD2O14647 1828 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-206ENST00000505705 ABCC11Q96J66 1382 aa11.6□□□□□ -0.55
LIMCH1-206ENST00000505705 PRAM1Q96QH2 718 aa11.6□□□□□ -0.55
LIMCH1-206ENST00000505705 SETD1AO15047 1707 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-206ENST00000505705 KIAA1210Q9ULL0 1709 aa11.6□□□□□ -0.55
LIMCH1-206ENST00000505705 TRPM1Q7Z4N2 1603 aa11.6□□□□□ -0.55
LIMCH1-206ENST00000505705 CPS1P31327 1500 aa11.6□□□□□ -0.55
LIMCH1-206ENST00000505705 ADGRB1O14514 1584 aa11.58□□□□□ -0.55
LIMCH1-206ENST00000505705 NKTRP30414 1462 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-206ENST00000505705 RALGAPBQ86X10 1494 aa11.58□□□□□ -0.56
LIMCH1-206ENST00000505705 TMEM94Q12767 1356 aa11.58□□□□□ -0.56
LIMCH1-206ENST00000505705 EIF3AQ14152 1382 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-206ENST00000505705 ROBO2Q9HCK4 1378 aa11.58□□□□□ -0.56
LIMCH1-206ENST00000505705 DCAF8L1A6NGE4 600 aa11.58□□□□□ -0.56
LIMCH1-206ENST00000505705 NCBP3Q53F19 620 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-206ENST00000505705 CERKQ8TCT0 537 aa11.58□□□□□ -0.56
LIMCH1-206ENST00000505705 SIRT1Q96EB6 747 aa11.58□□□□□ -0.56
LIMCH1-206ENST00000505705 ASXL1Q8IXJ9 1541 aa11.58□□□□□ -0.56
LIMCH1-206ENST00000505705 NWD1Q149M9 1564 aa11.58□□□□□ -0.56
LIMCH1-206ENST00000505705 PTCH1Q13635 1447 aa11.57□□□□□ -0.56
LIMCH1-206ENST00000505705 STRCP1A6NGW2 1772 aa11.56□□□□□ -0.56
LIMCH1-206ENST00000505705 MSH6P52701 1360 aa11.56□□□□□ -0.56
LIMCH1-206ENST00000505705 LRRC7Q96NW7 1537 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms