RNA–Protein interactions for RNA: ENST00000505589.1

NEDD9-210, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-210ENST00000505589 CADPS2Q86UW7 1296 aa15.39■□□□□ 0.05
NEDD9-210ENST00000505589 SPATA31A6Q5VVP1 1343 aa15.39■□□□□ 0.05
NEDD9-210ENST00000505589 TET3O43151 1660 aa15.38■□□□□ 0.05
NEDD9-210ENST00000505589 DAPK1P53355 1430 aa15.38■□□□□ 0.05
NEDD9-210ENST00000505589 MEX3CQ5U5Q3 659 aaKnown RBP15.38■□□□□ 0.05
NEDD9-210ENST00000505589 XIRP1Q702N8 1843 aaKnown RBP15.38■□□□□ 0.05
NEDD9-210ENST00000505589 NOS1P29475 1434 aa15.37■□□□□ 0.05
NEDD9-210ENST00000505589 LOC105371045A0A1W2PR82 267 aa15.37■□□□□ 0.05
NEDD9-210ENST00000505589 ATF3P18847 181 aa15.37■□□□□ 0.05
NEDD9-210ENST00000505589 C19orf44Q9H6X5 657 aa15.37■□□□□ 0.05
NEDD9-210ENST00000505589 ROBO1Q9Y6N7 1651 aa15.36■□□□□ 0.05
NEDD9-210ENST00000505589 RPRD2Q5VT52 1461 aaKnown RBP15.36■□□□□ 0.05
NEDD9-210ENST00000505589 RBM33Q96EV2 1170 aaKnown RBP15.36■□□□□ 0.05
NEDD9-210ENST00000505589 PLEKHG1Q9ULL1 1385 aa15.36■□□□□ 0.05
NEDD9-210ENST00000505589 PTPN23Q9H3S7 1636 aa15.35■□□□□ 0.05
NEDD9-210ENST00000505589 FGD6Q6ZV73 1430 aa15.34■□□□□ 0.05
NEDD9-210ENST00000505589 PIK3R4Q99570 1358 aa15.33■□□□□ 0.04
NEDD9-210ENST00000505589 ADGRB3O60242 1522 aa15.32■□□□□ 0.04
NEDD9-210ENST00000505589 CHGAP10645 457 aaKnown RBP15.31■□□□□ 0.04
NEDD9-210ENST00000505589 RXRBP28702 533 aa15.31■□□□□ 0.04
NEDD9-210ENST00000505589 CROCC2H7BZ55 1655 aa15.3■□□□□ 0.04
NEDD9-210ENST00000505589 NWD1Q149M9 1564 aa15.3■□□□□ 0.04
NEDD9-210ENST00000505589 RIMS2Q9UQ26 1411 aa15.3■□□□□ 0.04
NEDD9-210ENST00000505589 ANKRD50Q9ULJ7 1429 aa15.29■□□□□ 0.04
NEDD9-210ENST00000505589 FAM50AQ14320 339 aaKnown RBP15.29■□□□□ 0.04
NEDD9-210ENST00000505589 PHLPP1O60346 1717 aa15.29■□□□□ 0.04
NEDD9-210ENST00000505589 UPF1Q92900 1129 aaKnown RBP eCLIP15.28■□□□□ 0.04
NEDD9-210ENST00000505589 ZFYVE9O95405 1425 aa15.26■□□□□ 0.03
NEDD9-210ENST00000505589 LRRC59Q96AG4 307 aaKnown RBP15.26■□□□□ 0.03
NEDD9-210ENST00000505589 CHD2O14647 1828 aaKnown RBP15.26■□□□□ 0.03
NEDD9-210ENST00000505589 ADGRL2O95490 1459 aa15.26■□□□□ 0.03
NEDD9-210ENST00000505589 AMOTL2Q9Y2J4 779 aa15.25■□□□□ 0.03
NEDD9-210ENST00000505589 TRIM52Q96A61 297 aa15.24■□□□□ 0.03
NEDD9-210ENST00000505589 DIP2AQ14689 1571 aa15.21■□□□□ 0.03
NEDD9-210ENST00000505589 BRINP3Q76B58 766 aa15.21■□□□□ 0.03
NEDD9-210ENST00000505589 NUTM2BA6NNL0 878 aaPredicted RBP15.2■□□□□ 0.02
NEDD9-210ENST00000505589 NUTM2EB1AL46 878 aaPredicted RBP15.2■□□□□ 0.02
NEDD9-210ENST00000505589 NUTM2AQ8IVF1 878 aaPredicted RBP15.2■□□□□ 0.02
NEDD9-210ENST00000505589 DCCP43146 1447 aa15.19■□□□□ 0.02
NEDD9-210ENST00000505589 TMEM131LA2VDJ0 1609 aa15.19■□□□□ 0.02
NEDD9-210ENST00000505589 COL16A1Q07092 1604 aaPredicted RBP15.19■□□□□ 0.02
NEDD9-210ENST00000505589 NUTM2DQ5VT03 806 aaPredicted RBP15.19■□□□□ 0.02
NEDD9-210ENST00000505589 NGLY1Q96IV0 654 aa15.19■□□□□ 0.02
NEDD9-210ENST00000505589 CDK12Q9NYV4 1490 aaPredicted RBP15.19■□□□□ 0.02
NEDD9-210ENST00000505589 ADAMTS13Q76LX8 1427 aa15.18■□□□□ 0.02
NEDD9-210ENST00000505589 AHDC1Q5TGY3 1603 aaPredicted RBP15.18■□□□□ 0.02
NEDD9-210ENST00000505589 RBM6P78332 1123 aaKnown RBP15.18■□□□□ 0.02
NEDD9-210ENST00000505589 QTRT2Q9H974 415 aaKnown RBP15.18■□□□□ 0.02
NEDD9-210ENST00000505589 TRPM2O94759 1503 aa15.17■□□□□ 0.02
NEDD9-210ENST00000505589 ZNF326Q5BKZ1 582 aaKnown RBP15.16■□□□□ 0.02
NEDD9-210ENST00000505589 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.16■□□□□ 0.02
NEDD9-210ENST00000505589 SETD5Q9C0A6 1442 aa15.16■□□□□ 0.02
NEDD9-210ENST00000505589 AFF2P51816 1311 aa15.16■□□□□ 0.02
NEDD9-210ENST00000505589 SHPRHQ149N8 1683 aa15.16■□□□□ 0.02
NEDD9-210ENST00000505589 NUP155O75694 1391 aa15.15■□□□□ 0.02
NEDD9-210ENST00000505589 ROCK1Q13464 1354 aa15.15■□□□□ 0.02
NEDD9-210ENST00000505589 LRP6O75581 1613 aa15.14■□□□□ 0.01
NEDD9-210ENST00000505589 GCC2Q8IWJ2 1684 aa15.14■□□□□ 0.01
NEDD9-210ENST00000505589 C8orf37Q96NL8 207 aa15.12■□□□□ 0.01
NEDD9-210ENST00000505589 MYO5BQ9ULV0 1848 aa15.11■□□□□ 0.01
NEDD9-210ENST00000505589 SETD1AO15047 1707 aaKnown RBP15.11■□□□□ 0.01
NEDD9-210ENST00000505589 VGFO15240 615 aaPredicted RBP15.09■□□□□ 0.01
NEDD9-210ENST00000505589 PTPRUQ92729 1446 aa15.09■□□□□ 0.01
NEDD9-210ENST00000505589 UNC13BO14795 1591 aa15.08■□□□□ 0
NEDD9-210ENST00000505589 CCDC125Q86Z20 511 aa15.08■□□□□ 0
NEDD9-210ENST00000505589 TRPC5Q9UL62 973 aaPredicted RBP15.08■□□□□ 0
NEDD9-210ENST00000505589 ASXL1Q8IXJ9 1541 aa15.07■□□□□ 0
NEDD9-210ENST00000505589 MST1RQ04912 1400 aa15.07■□□□□ 0
NEDD9-210ENST00000505589 E9PCH4 1651 aa15.06■□□□□ 0
NEDD9-210ENST00000505589 USP21Q9UK80 565 aa15.06■□□□□ 0
NEDD9-210ENST00000505589 ATAD2Q6PL18 1390 aa15.06■□□□□ 0
NEDD9-210ENST00000505589 IQGAP3Q86VI3 1631 aa15.06■□□□□ 0
NEDD9-210ENST00000505589 ZRANB1Q9UGI0 708 aa15.05■□□□□ -0
NEDD9-210ENST00000505589 SETBP1Q9Y6X0 1596 aa15.04■□□□□ -0
NEDD9-210ENST00000505589 ADGRL3Q9HAR2 1447 aa15.04■□□□□ -0
NEDD9-210ENST00000505589 PNPLA6Q8IY17 1366 aa15.04■□□□□ -0
NEDD9-210ENST00000505589 ADAMTS2O95450 1211 aa15.04■□□□□ -0
NEDD9-210ENST00000505589 METP08581 1390 aa15.03■□□□□ -0
NEDD9-210ENST00000505589 SOS2Q07890 1332 aaPredicted RBP15.03■□□□□ -0
NEDD9-210ENST00000505589 RPGRIP1LQ68CZ1 1315 aa15.03■□□□□ -0
NEDD9-210ENST00000505589 ITGAEP38570 1179 aa15.03■□□□□ -0
NEDD9-210ENST00000505589 FNBP4Q8N3X1 1017 aaPredicted RBP15.03■□□□□ -0
NEDD9-210ENST00000505589 PTCH1Q13635 1447 aa15□□□□□ -0.01
NEDD9-210ENST00000505589 NHSL1Q5SYE7 1610 aa15□□□□□ -0.01
NEDD9-210ENST00000505589 DDX17Q92841 729 aaKnown RBP15□□□□□ -0.01
NEDD9-210ENST00000505589 NPHP3Q7Z494 1330 aa14.99□□□□□ -0.01
NEDD9-210ENST00000505589 C1orf167Q5SNV9 1468 aa14.99□□□□□ -0.01
NEDD9-210ENST00000505589 RGS12O14924 1447 aa14.99□□□□□ -0.01
NEDD9-210ENST00000505589 LRPPRCP42704 1394 aaKnown RBP14.98□□□□□ -0.01
NEDD9-210ENST00000505589 XRN1Q8IZH2 1706 aaKnown RBP14.98□□□□□ -0.01
NEDD9-210ENST00000505589 ORAI2Q96SN7 254 aa14.98□□□□□ -0.01
NEDD9-210ENST00000505589 HFM1A2PYH4 1435 aa14.96□□□□□ -0.01
NEDD9-210ENST00000505589 ESCO1Q5FWF5 840 aa14.96□□□□□ -0.01
NEDD9-210ENST00000505589 GJD4Q96KN9 370 aaPredicted RBP14.94□□□□□ -0.02
NEDD9-210ENST00000505589 NRXN3Q9Y4C0 1643 aa14.94□□□□□ -0.02
NEDD9-210ENST00000505589 SPHKAPQ2M3C7 1700 aa14.94□□□□□ -0.02
NEDD9-210ENST00000505589 SF3B2Q13435 895 aaKnown RBP14.92□□□□□ -0.02
NEDD9-210ENST00000505589 NEXMIFQ5QGS0 1516 aa14.91□□□□□ -0.02
NEDD9-210ENST00000505589 ATRNO75882 1429 aa14.91□□□□□ -0.02
NEDD9-210ENST00000505589 ROBO2Q9HCK4 1378 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms