RNA–Protein interactions for RNA: ENST00000505199.5

SNCA-208, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 411 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-208ENST00000505199 STAC3Q96MF2 364 aa18.24■□□□□ 0.51
SNCA-208ENST00000505199 CLSPNQ9HAW4 1339 aa18.23■□□□□ 0.51
SNCA-208ENST00000505199 MYO5BQ9ULV0 1848 aa18.23■□□□□ 0.51
SNCA-208ENST00000505199 RIMS2Q9UQ26 1411 aa18.22■□□□□ 0.51
SNCA-208ENST00000505199 TXNDC2Q86VQ3 553 aa18.2■□□□□ 0.5
SNCA-208ENST00000505199 NEXMIFQ5QGS0 1516 aa18.19■□□□□ 0.5
SNCA-208ENST00000505199 IQGAP1P46940 1657 aa18.19■□□□□ 0.5
SNCA-208ENST00000505199 NPHP4O75161 1426 aaPredicted RBP18.19■□□□□ 0.5
SNCA-208ENST00000505199 PLEKHG1Q9ULL1 1385 aa18.18■□□□□ 0.5
SNCA-208ENST00000505199 VGFO15240 615 aaPredicted RBP18.18■□□□□ 0.5
SNCA-208ENST00000505199 CHGAP10645 457 aaKnown RBP18.18■□□□□ 0.5
SNCA-208ENST00000505199 LTKP29376 864 aa18.17■□□□□ 0.5
SNCA-208ENST00000505199 PPLO60437 1756 aa18.17■□□□□ 0.5
SNCA-208ENST00000505199 DIP2AQ14689 1571 aa18.16■□□□□ 0.5
SNCA-208ENST00000505199 IFT172Q9UG01 1749 aa18.15■□□□□ 0.5
SNCA-208ENST00000505199 ZNF326Q5BKZ1 582 aaKnown RBP18.15■□□□□ 0.5
SNCA-208ENST00000505199 MYOM2P54296 1465 aa18.14■□□□□ 0.5
SNCA-208ENST00000505199 SETBP1Q9Y6X0 1596 aa18.14■□□□□ 0.49
SNCA-208ENST00000505199 NCKAP5LQ9HCH0 1330 aa18.14■□□□□ 0.49
SNCA-208ENST00000505199 PPP1R15AO75807 674 aaPredicted RBP18.13■□□□□ 0.49
SNCA-208ENST00000505199 PIK3R4Q99570 1358 aa18.11■□□□□ 0.49
SNCA-208ENST00000505199 NRXN1Q9ULB1 1477 aa18.11■□□□□ 0.49
SNCA-208ENST00000505199 TBX22Q9Y458 520 aa18.1■□□□□ 0.49
SNCA-208ENST00000505199 TIMELESSQ9UNS1 1208 aa18.07■□□□□ 0.48
SNCA-208ENST00000505199 PIK3C2GO75747 1445 aa18.06■□□□□ 0.48
SNCA-208ENST00000505199 ADAMTS13Q76LX8 1427 aa18.06■□□□□ 0.48
SNCA-208ENST00000505199 LAMC1P11047 1609 aa18.06■□□□□ 0.48
SNCA-208ENST00000505199 NRXN3Q9Y4C0 1643 aa18.06■□□□□ 0.48
SNCA-208ENST00000505199 RGL3Q3MIN7 710 aa18.06■□□□□ 0.48
SNCA-208ENST00000505199 CPS1P31327 1500 aa18.04■□□□□ 0.48
SNCA-208ENST00000505199 PRAG1Q86YV5 1406 aa18.03■□□□□ 0.48
SNCA-208ENST00000505199 NWD1Q149M9 1564 aa18.03■□□□□ 0.48
SNCA-208ENST00000505199 NKTRP30414 1462 aaKnown RBP18.01■□□□□ 0.47
SNCA-208ENST00000505199 IQSEC2Q5JU85 1478 aa18.01■□□□□ 0.47
SNCA-208ENST00000505199 ALKQ9UM73 1620 aa18.01■□□□□ 0.47
SNCA-208ENST00000505199 SETD1AO15047 1707 aaKnown RBP18.01■□□□□ 0.47
SNCA-208ENST00000505199 CHD2O14647 1828 aaKnown RBP18■□□□□ 0.47
SNCA-208ENST00000505199 DCAF11Q8TEB1 546 aa18■□□□□ 0.47
SNCA-208ENST00000505199 BCANQ96GW7 911 aa18■□□□□ 0.47
SNCA-208ENST00000505199 LTBP4Q8N2S1 1624 aa18■□□□□ 0.47
SNCA-208ENST00000505199 ADGRF5Q8IZF2 1346 aa17.99■□□□□ 0.47
SNCA-208ENST00000505199 KIAA1210Q9ULL0 1709 aa17.99■□□□□ 0.47
SNCA-208ENST00000505199 KCNA6P17658 529 aa17.99■□□□□ 0.47
SNCA-208ENST00000505199 SIN3AQ96ST3 1273 aa17.99■□□□□ 0.47
SNCA-208ENST00000505199 NUTM2DQ5VT03 806 aaPredicted RBP17.98■□□□□ 0.47
SNCA-208ENST00000505199 SLC26A8Q96RN1 970 aa17.98■□□□□ 0.47
SNCA-208ENST00000505199 C14orf93Q9H972 538 aaKnown RBP17.98■□□□□ 0.47
SNCA-208ENST00000505199 TONSLQ96HA7 1378 aa17.98■□□□□ 0.47
SNCA-208ENST00000505199 CCER1Q8TC90 406 aaPredicted RBP17.97■□□□□ 0.47
SNCA-208ENST00000505199 NCOA3Q9Y6Q9 1424 aa17.97■□□□□ 0.47
SNCA-208ENST00000505199 L3MBTL2Q969R5 705 aa17.96■□□□□ 0.47
SNCA-208ENST00000505199 XRN1Q8IZH2 1706 aaKnown RBP17.95■□□□□ 0.46
SNCA-208ENST00000505199 ZNF335Q9H4Z2 1342 aaPredicted RBP17.95■□□□□ 0.46
SNCA-208ENST00000505199 NEUROD1Q13562 356 aa17.94■□□□□ 0.46
SNCA-208ENST00000505199 TECPR2O15040 1411 aa17.94■□□□□ 0.46
SNCA-208ENST00000505199 METP08581 1390 aa17.93■□□□□ 0.46
SNCA-208ENST00000505199 PTCH1Q13635 1447 aa17.93■□□□□ 0.46
SNCA-208ENST00000505199 STRCP1A6NGW2 1772 aa17.91■□□□□ 0.46
SNCA-208ENST00000505199 ADGRB1O14514 1584 aa17.91■□□□□ 0.46
SNCA-208ENST00000505199 ABCC11Q96J66 1382 aa17.91■□□□□ 0.46
SNCA-208ENST00000505199 KNDC1Q76NI1 1749 aa17.9■□□□□ 0.46
SNCA-208ENST00000505199 SIRT1Q96EB6 747 aa17.9■□□□□ 0.46
SNCA-208ENST00000505199 KDM2AQ9Y2K7 1162 aa17.9■□□□□ 0.46
SNCA-208ENST00000505199 LRPPRCP42704 1394 aaKnown RBP17.9■□□□□ 0.46
SNCA-208ENST00000505199 LRRC7Q96NW7 1537 aa17.89■□□□□ 0.45
SNCA-208ENST00000505199 AMOTL2Q9Y2J4 779 aa17.89■□□□□ 0.45
SNCA-208ENST00000505199 PTPRUQ92729 1446 aa17.89■□□□□ 0.45
SNCA-208ENST00000505199 ASXL1Q8IXJ9 1541 aa17.88■□□□□ 0.45
SNCA-208ENST00000505199 FAM135BQ49AJ0 1406 aa17.88■□□□□ 0.45
SNCA-208ENST00000505199 YTHDC2Q9H6S0 1430 aaKnown RBP17.88■□□□□ 0.45
SNCA-208ENST00000505199 DLC1Q96QB1 1528 aa17.88■□□□□ 0.45
SNCA-208ENST00000505199 CFAP70Q5T0N1 1121 aa17.86■□□□□ 0.45
SNCA-208ENST00000505199 CERKQ8TCT0 537 aa17.86■□□□□ 0.45
SNCA-208ENST00000505199 TRPM1Q7Z4N2 1603 aa17.86■□□□□ 0.45
SNCA-208ENST00000505199 DCCP43146 1447 aa17.84■□□□□ 0.45
SNCA-208ENST00000505199 GPRASP1Q5JY77 1395 aa17.84■□□□□ 0.45
SNCA-208ENST00000505199 TMEM94Q12767 1356 aa17.83■□□□□ 0.45
SNCA-208ENST00000505199 RALGAPBQ86X10 1494 aa17.82■□□□□ 0.44
SNCA-208ENST00000505199 PROSER2Q86WR7 435 aaPredicted RBP17.82■□□□□ 0.44
SNCA-208ENST00000505199 XIRP1Q702N8 1843 aaKnown RBP17.82■□□□□ 0.44
SNCA-208ENST00000505199 ROBO2Q9HCK4 1378 aa17.79■□□□□ 0.44
SNCA-208ENST00000505199 TMEM132EQ6IEE7 984 aa17.79■□□□□ 0.44
SNCA-208ENST00000505199 C19orf44Q9H6X5 657 aa17.79■□□□□ 0.44
SNCA-208ENST00000505199 ADGRL3Q9HAR2 1447 aa17.79■□□□□ 0.44
SNCA-208ENST00000505199 ROCK2O75116 1388 aaKnown RBP17.79■□□□□ 0.44
SNCA-208ENST00000505199 MSH6P52701 1360 aa17.79■□□□□ 0.44
SNCA-208ENST00000505199 SENP3Q9H4L4 574 aaPredicted RBP17.77■□□□□ 0.44
SNCA-208ENST00000505199 EIF3AQ14152 1382 aaKnown RBP17.77■□□□□ 0.43
SNCA-208ENST00000505199 NBPF8Q3BBV2 869 aa17.76■□□□□ 0.43
SNCA-208ENST00000505199 ARHGEF28Q8N1W1 1705 aaKnown RBP17.75■□□□□ 0.43
SNCA-208ENST00000505199 CADPS2Q86UW7 1296 aa17.75■□□□□ 0.43
SNCA-208ENST00000505199 CDC42BPGQ6DT37 1551 aa17.74■□□□□ 0.43
SNCA-208ENST00000505199 TOM1O60784 492 aa17.74■□□□□ 0.43
SNCA-208ENST00000505199 NBPF1Q3BBV0 1214 aa17.74■□□□□ 0.43
SNCA-208ENST00000505199 ADGRB2O60241 1585 aa17.74■□□□□ 0.43
SNCA-208ENST00000505199 SLC24A1O60721 1099 aa17.73■□□□□ 0.43
SNCA-208ENST00000505199 NALCNQ8IZF0 1738 aa17.72■□□□□ 0.43
SNCA-208ENST00000505199 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.72■□□□□ 0.43
SNCA-208ENST00000505199 SBNO2Q9Y2G9 1366 aa17.72■□□□□ 0.43
SNCA-208ENST00000505199 STK26Q9P289 416 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms