RNA–Protein interactions for RNA: ENST00000504011.5

PDLIM3-204, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 2,819 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-204ENST00000504011 AMER1Q5JTC6 1135 aaPredicted RBP20.36■□□□□ 0.85
PDLIM3-204ENST00000504011 TET3O43151 1660 aa20.36■□□□□ 0.85
PDLIM3-204ENST00000504011 NOS1P29475 1434 aa20.36■□□□□ 0.85
PDLIM3-204ENST00000504011 RCAN3Q9UKA8 241 aa20.35■□□□□ 0.85
PDLIM3-204ENST00000504011 MROH1Q8NDA8 1641 aa20.35■□□□□ 0.85
PDLIM3-204ENST00000504011 DEPDC5O75140 1603 aa20.34■□□□□ 0.85
PDLIM3-204ENST00000504011 EXOC6Q8TAG9 804 aa20.34■□□□□ 0.85
PDLIM3-204ENST00000504011 WDR43Q15061 677 aaKnown RBP eCLIP20.33■□□□□ 0.85
PDLIM3-204ENST00000504011 CEP152O94986 1710 aa20.33■□□□□ 0.84
PDLIM3-204ENST00000504011 ERICH6BQ5W0A0 696 aa20.33■□□□□ 0.84
PDLIM3-204ENST00000504011 NPATQ14207 1427 aa20.32■□□□□ 0.84
PDLIM3-204ENST00000504011 CDCA8Q53HL2 280 aa20.31■□□□□ 0.84
PDLIM3-204ENST00000504011 CARD14Q9BXL6 1004 aa20.31■□□□□ 0.84
PDLIM3-204ENST00000504011 RNF17Q9BXT8 1623 aaKnown RBP20.31■□□□□ 0.84
PDLIM3-204ENST00000504011 PPRC1Q5VV67 1664 aaKnown RBP20.31■□□□□ 0.84
PDLIM3-204ENST00000504011 RRP1P56182 461 aaKnown RBP20.31■□□□□ 0.84
PDLIM3-204ENST00000504011 POGZQ7Z3K3 1410 aa20.3■□□□□ 0.84
PDLIM3-204ENST00000504011 SLC12A5Q9H2X9 1139 aa20.3■□□□□ 0.84
PDLIM3-204ENST00000504011 STK26Q9P289 416 aa20.3■□□□□ 0.84
PDLIM3-204ENST00000504011 VWDEQ8N2E2 1590 aa20.29■□□□□ 0.84
PDLIM3-204ENST00000504011 LAMC1P11047 1609 aa20.29■□□□□ 0.84
PDLIM3-204ENST00000504011 MSH5O43196 834 aa20.29■□□□□ 0.84
PDLIM3-204ENST00000504011 EIF3AQ14152 1382 aaKnown RBP20.28■□□□□ 0.84
PDLIM3-204ENST00000504011 EFCAB6Q5THR3 1501 aa20.27■□□□□ 0.84
PDLIM3-204ENST00000504011 RNF123Q5XPI4 1314 aa20.27■□□□□ 0.84
PDLIM3-204ENST00000504011 IQGAP1P46940 1657 aa20.26■□□□□ 0.83
PDLIM3-204ENST00000504011 SKAP1Q86WV1 359 aa20.26■□□□□ 0.83
PDLIM3-204ENST00000504011 MROH2AA6NES4 1674 aa20.26■□□□□ 0.83
PDLIM3-204ENST00000504011 CENPJQ9HC77 1338 aaPredicted RBP20.25■□□□□ 0.83
PDLIM3-204ENST00000504011 MLECQ14165 292 aa20.24■□□□□ 0.83
PDLIM3-204ENST00000504011 ABCA6Q8N139 1617 aa20.24■□□□□ 0.83
PDLIM3-204ENST00000504011 FRMPD1Q5SYB0 1578 aa20.24■□□□□ 0.83
PDLIM3-204ENST00000504011 FAM69CQ0P6D2 419 aa20.23■□□□□ 0.83
PDLIM3-204ENST00000504011 IDI1Q13907 227 aa20.23■□□□□ 0.83
PDLIM3-204ENST00000504011 FBXO31Q5XUX0 539 aaPredicted RBP20.23■□□□□ 0.83
PDLIM3-204ENST00000504011 STAC3Q96MF2 364 aa20.23■□□□□ 0.83
PDLIM3-204ENST00000504011 YEATS2Q9ULM3 1422 aa20.23■□□□□ 0.83
PDLIM3-204ENST00000504011 NEUROD2Q15784 382 aa20.22■□□□□ 0.83
PDLIM3-204ENST00000504011 ERVK-7P63135 1459 aa20.22■□□□□ 0.83
PDLIM3-204ENST00000504011 PLEKHH1Q9ULM0 1364 aa20.22■□□□□ 0.83
PDLIM3-204ENST00000504011 MAP3K4Q9Y6R4 1608 aa20.22■□□□□ 0.83
PDLIM3-204ENST00000504011 C20orf194Q5TEA3 1177 aa20.22■□□□□ 0.83
PDLIM3-204ENST00000504011 KIF1BO60333 1816 aa20.21■□□□□ 0.83
PDLIM3-204ENST00000504011 APAF1O14727 1248 aa20.21■□□□□ 0.83
PDLIM3-204ENST00000504011 ANP32EQ9BTT0 268 aa20.19■□□□□ 0.82
PDLIM3-204ENST00000504011 CABP2Q9NPB3 220 aa20.19■□□□□ 0.82
PDLIM3-204ENST00000504011 C14orf93Q9H972 538 aaKnown RBP20.19■□□□□ 0.82
PDLIM3-204ENST00000504011 SPINK5Q9NQ38 1064 aaPredicted RBP20.18■□□□□ 0.82
PDLIM3-204ENST00000504011 MLH3Q9UHC1 1453 aa20.18■□□□□ 0.82
PDLIM3-204ENST00000504011 ASXL1Q8IXJ9 1541 aa20.18■□□□□ 0.82
PDLIM3-204ENST00000504011 HECW2Q9P2P5 1572 aa20.18■□□□□ 0.82
PDLIM3-204ENST00000504011 PDE3BQ13370 1112 aa20.17■□□□□ 0.82
PDLIM3-204ENST00000504011 BLMP54132 1417 aaPredicted RBP20.17■□□□□ 0.82
PDLIM3-204ENST00000504011 CRBNQ96SW2 442 aa20.17■□□□□ 0.82
PDLIM3-204ENST00000504011 RRP7AQ9Y3A4 280 aaKnown RBP20.16■□□□□ 0.82
PDLIM3-204ENST00000504011 MORC1Q86VD1 984 aa20.15■□□□□ 0.82
PDLIM3-204ENST00000504011 DMRT2Q9Y5R5 561 aa20.15■□□□□ 0.82
PDLIM3-204ENST00000504011 MYOM2P54296 1465 aa20.15■□□□□ 0.82
PDLIM3-204ENST00000504011 MYOM1P52179 1685 aa20.14■□□□□ 0.81
PDLIM3-204ENST00000504011 SYNMO15061 1565 aa20.14■□□□□ 0.81
PDLIM3-204ENST00000504011 ABCC3O15438 1527 aa20.13■□□□□ 0.81
PDLIM3-204ENST00000504011 STAG3Q9UJ98 1225 aa20.13■□□□□ 0.81
PDLIM3-204ENST00000504011 NSD3Q9BZ95 1437 aa20.13■□□□□ 0.81
PDLIM3-204ENST00000504011 ADGRB3O60242 1522 aa20.12■□□□□ 0.81
PDLIM3-204ENST00000504011 GOLGA2Q08379 1002 aa20.12■□□□□ 0.81
PDLIM3-204ENST00000504011 KDM5AP29375 1690 aaKnown RBP20.11■□□□□ 0.81
PDLIM3-204ENST00000504011 PIK3C2GO75747 1445 aa20.11■□□□□ 0.81
PDLIM3-204ENST00000504011 VGFO15240 615 aaPredicted RBP20.11■□□□□ 0.81
PDLIM3-204ENST00000504011 DUSP27Q5VZP5 1158 aa20.11■□□□□ 0.81
PDLIM3-204ENST00000504011 MINK1Q8N4C8 1332 aaPredicted RBP20.11■□□□□ 0.81
PDLIM3-204ENST00000504011 SRPK2P78362 688 aaKnown RBP20.1■□□□□ 0.81
PDLIM3-204ENST00000504011 LMTK2Q8IWU2 1503 aa20.09■□□□□ 0.81
PDLIM3-204ENST00000504011 SIGLEC1Q9BZZ2 1709 aa20.09■□□□□ 0.81
PDLIM3-204ENST00000504011 NPM2Q86SE8 214 aaKnown RBP20.09■□□□□ 0.81
PDLIM3-204ENST00000504011 ERICH6Q7L0X2 663 aa20.08■□□□□ 0.81
PDLIM3-204ENST00000504011 MTHFSP49914 203 aa20.06■□□□□ 0.8
PDLIM3-204ENST00000504011 ZMYM4Q5VZL5 1548 aa20.06■□□□□ 0.8
PDLIM3-204ENST00000504011 DIP2CQ9Y2E4 1556 aa20.06■□□□□ 0.8
PDLIM3-204ENST00000504011 BCAR3O75815 825 aa20.06■□□□□ 0.8
PDLIM3-204ENST00000504011 NRXN1Q9ULB1 1477 aa20.06■□□□□ 0.8
PDLIM3-204ENST00000504011 TSPOAP1O95153 1857 aa20.05■□□□□ 0.8
PDLIM3-204ENST00000504011 NEO1Q92859 1461 aa20.05■□□□□ 0.8
PDLIM3-204ENST00000504011 IFT172Q9UG01 1749 aa20.05■□□□□ 0.8
PDLIM3-204ENST00000504011 CFAP74Q9C0B2 1584 aa20.05■□□□□ 0.8
PDLIM3-204ENST00000504011 FANCIQ9NVI1 1328 aa20.05■□□□□ 0.8
PDLIM3-204ENST00000504011 PRAM1Q96QH2 718 aa20.04■□□□□ 0.8
PDLIM3-204ENST00000504011 PLPPR3Q6T4P5 718 aa20.04■□□□□ 0.8
PDLIM3-204ENST00000504011 POGKQ9P215 609 aa20.04■□□□□ 0.8
PDLIM3-204ENST00000504011 GGNBP2Q9H3C7 697 aa20.03■□□□□ 0.8
PDLIM3-204ENST00000504011 CAMSAP1Q5T5Y3 1602 aa20.03■□□□□ 0.8
PDLIM3-204ENST00000504011 KIAA1210Q9ULL0 1709 aa20.03■□□□□ 0.8
PDLIM3-204ENST00000504011 RPGRIP1LQ68CZ1 1315 aa20.02■□□□□ 0.8
PDLIM3-204ENST00000504011 EVC2Q86UK5 1308 aa20.02■□□□□ 0.8
PDLIM3-204ENST00000504011 SLFN5Q08AF3 891 aa20.02■□□□□ 0.8
PDLIM3-204ENST00000504011 ADGRB1O14514 1584 aa20.02■□□□□ 0.8
PDLIM3-204ENST00000504011 ZNF521Q96K83 1311 aa20.02■□□□□ 0.79
PDLIM3-204ENST00000504011 FBLN1P23142 703 aa20.01■□□□□ 0.79
PDLIM3-204ENST00000504011 PPLO60437 1756 aa20.01■□□□□ 0.79
PDLIM3-204ENST00000504011 SLC24A1O60721 1099 aa20.01■□□□□ 0.79
PDLIM3-204ENST00000504011 WAPLQ7Z5K2 1190 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms